Clone IP08853 Report

Search the DGRC for IP08853

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:88
Well:53
Vector:pOT2
Associated Gene/Transcriptlbl-RB
Protein status:IP08853.pep: gold
Preliminary Size:1847
Sequenced Size:1752

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6570 2005-01-01 Successful iPCR screen
lbl 2008-04-29 Release 5.5 accounting
lbl 2008-04-29 Picked prior to 5.5
lbl 2008-08-15 Release 5.9 accounting
lbl 2008-12-18 5.12 accounting

Clone Sequence Records

IP08853.complete Sequence

1752 bp (1752 high quality bases) assembled on 2005-08-25

GenBank Submission: BT022129

> IP08853.complete
TTGCACGTTGTGCCGACGTTTTTCGTGTGACAGCCGCGCGTTTTGCCGAC
GCGTTTTTAATCGCCCGTAGAAAAGAGTTTGGAGCTAAGCCGTAAGGATA
CAGCCAGGATGTGCTGAGTGGCCAAAGGAAAATACACCTAGAGATGCCGC
AAAGAACTCCCAGTCCCGCTAACTCTGATGTTTCGGTGGGTTCGCCCAGT
CCACCGCCTCTGAGATCGTTGAATATGAAACGATTGCGGCTTTTGAGGAG
TCCTATTAGCCTGGAACATGACCGCCAAAAGTCATCACCCGTCAGGGTCA
AGAGCTTTTCCATTGCCGATATCCTGGGGCGAGGGCATGAAGAGGATCGT
GTGGAGAAGAAGCCGGAGAGAATTGCCATTCCCAATGCTTTACCAGGAGT
ACCTGCTCCATTGGCTCTGATCAACGAAAGATTGCAAATACCCTTGGTGC
CGAATTGCCCTCCGCCGGCTGCACTACATACATTTTTATCGCCCGCTTTG
CTCCACAGCTATGAGCAGCGACTGGCCTGGGACTACCAGCGCCAGCTCCA
GGAGCACTTCCAGGCACAGGCGCAACTCCTCCGGCAGATGACCCTGAATC
CCGCGATCATTGCCTCCGAGGACGGCAGTTCAGAGCGTTCCCAGCGATCA
AGCAGCAGCAATGGCAGCACCGAATGCTGCAGTCCCACCCAGGCGGAAAA
AGTGGAAAAACGTTCCCAAGAGGACAGAATGGAGGTTCCTAAGAAGTCGC
CCGAGGAACAACCAAAGGGGGCCAGCAAATCAAGTGGAGACACTCCCTTG
GATGCCCTCTTCCAGCTGTCCACCAAAAACTTTGACGAAGAGCAGGTCAG
TACATCAAAGAGGCATTCAGCCCTTCGCTGGAACATATTCGAGACTTCGC
CCAAATCCAAAGGGACGAAGGGCATAACGAATGCGGGAATGAATGGAAAA
CTCAGTGATTTGGAAAAACAAGCACAAGTTGGTGTTATTGTGGATGTGGA
TGTTGCTATTTACACGCAACACGACTGAGAACCAAACAACAACCACCAAC
AATCACCGCAATAAAACAGGCCGAGAACGACAAACTTCACGGTAAAATCG
AAGGAAGCTGTGGAAAATGTTTTCTTCCCCCGAATTGCTTCCTCAGATCG
GTATATATATAGTTCTATATCTATATGGGCTGCTACTGTGGGCAATGTCA
ACAAAGCATTTAACACCTTCATCGGCACAACAGCAGCCCCATGTGCTGGT
GGGTATTTGTGTAATCGTTTATTAAAGTGTGAAGTAAATTAATTTGACTA
TGCGAGATGTTTGCCGCTGTTTCCATGGCAAATGACTTGCAATCGCTGAC
AAGATTAATTAATCCCCTTGCACAGCTGCGGGGAAATCGAAATGAAAACA
AAATGTTTGCCTTAATTGATTTTCTTATCCATGGCTTTTCTTTTCGATTT
CGCTTGTATTTCGTTTTGCAGTGCGGAATATTATGACACGTCTCGTTATG
CCAACGAAAGGCGTTGTGTTTCATGTTTTGGCCATATGCAGAAGAGTTAA
GTGCAGAGGAAAAATAGTGTGTAAACTCTAGTATCTATTAAGTGCAAAAT
GTATATACATTTGTATTGCAGCCACTAATTCCAGTTAATGGAATTTAAAA
TTACTTTGTAACCAGATATTCAATACATAAGTTCATAAATAAAATAAAAA
CACATACACATGCATATAATATGCATATATATTTTAAAAAAAAAAAAAAA
AA

IP08853.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
lbl-RB 1735 lbl-RB 1..1735 1..1735 8675 100 Plus
lbl.a 1911 lbl.a 124..969 1..846 4230 100 Plus
lbl-RA 1912 lbl-RA 73..918 1..846 4230 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 17250064..17250953 1735..846 4285 98.8 Minus
chr3R 27901430 chr3R 17257115..17257960 846..1 4215 99.9 Minus
chr3R 27901430 chr3R 17268938..17269270 838..509 565 78.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:57:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21426214..21427104 1736..846 4455 100 Minus
3R 32079331 3R 21433265..21434110 846..1 4230 100 Minus
3R 32079331 3R 21445093..21445425 838..509 550 78.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 21167045..21167935 1736..846 4455 100 Minus
3R 31820162 3R 21174096..21174941 846..1 4230 100 Minus
3R 31820162 3R 21186054..21186256 711..509 520 83.7 Minus
3R 31820162 3R 21185924..21185976 838..786 145 84.9 Minus
Blast to na_te.dros performed 2019-03-16 09:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
transib4 2656 transib4 TRANSIB4 2656bp 315..371 1063..1007 123 68.4 Minus

IP08853.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:05:40 Download gff for IP08853.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 17250075..17250952 847..1724 98 <- Minus
chr3R 17257115..17257960 1..846 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:38:01 Download gff for IP08853.complete
Subject Subject Range Query Range Percent Splice Strand
lbl-RB 1..885 144..1028 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:52:12 Download gff for IP08853.complete
Subject Subject Range Query Range Percent Splice Strand
lbl-RB 1..885 144..1028 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:35:55 Download gff for IP08853.complete
Subject Subject Range Query Range Percent Splice Strand
lbl-RB 1..885 144..1028 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:32:53 Download gff for IP08853.complete
Subject Subject Range Query Range Percent Splice Strand
lbl-RA 1..703 144..846 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:58:52 Download gff for IP08853.complete
Subject Subject Range Query Range Percent Splice Strand
lbl-RB 1..885 144..1028 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:26:36 Download gff for IP08853.complete
Subject Subject Range Query Range Percent Splice Strand
lbl-RB 1..1735 1..1735 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:52:12 Download gff for IP08853.complete
Subject Subject Range Query Range Percent Splice Strand
lbl-RB 1..1735 1..1735 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:35:55 Download gff for IP08853.complete
Subject Subject Range Query Range Percent Splice Strand
lbl-RB 24..1758 1..1735 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:32:53 Download gff for IP08853.complete
Subject Subject Range Query Range Percent Splice Strand
lbl-RA 14..859 1..846 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:58:52 Download gff for IP08853.complete
Subject Subject Range Query Range Percent Splice Strand
lbl-RB 24..1758 1..1735 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:05:40 Download gff for IP08853.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21433265..21434110 1..846 100   Minus
3R 21426215..21427103 847..1735 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:05:40 Download gff for IP08853.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21433265..21434110 1..846 100   Minus
3R 21426215..21427103 847..1735 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:05:40 Download gff for IP08853.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21433265..21434110 1..846 100   Minus
3R 21426215..21427103 847..1735 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:35:55 Download gff for IP08853.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17251937..17252825 847..1735 100 <- Minus
arm_3R 17258987..17259832 1..846 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:11:27 Download gff for IP08853.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21167046..21167934 847..1735 100 <- Minus
3R 21174096..21174941 1..846 100   Minus

IP08853.pep Sequence

Translation from 143 to 1027

> IP08853.pep
MPQRTPSPANSDVSVGSPSPPPLRSLNMKRLRLLRSPISLEHDRQKSSPV
RVKSFSIADILGRGHEEDRVEKKPERIAIPNALPGVPAPLALINERLQIP
LVPNCPPPAALHTFLSPALLHSYEQRLAWDYQRQLQEHFQAQAQLLRQMT
LNPAIIASEDGSSERSQRSSSSNGSTECCSPTQAEKVEKRSQEDRMEVPK
KSPEEQPKGASKSSGDTPLDALFQLSTKNFDEEQVSTSKRHSALRWNIFE
TSPKSKGTKGITNAGMNGKLSDLEKQAQVGVIVDVDVAIYTQHD*

IP08853.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16416-PA 365 GF16416-PA 1..273 1..276 695 59.6 Plus
Dana\GF16415-PA 472 GF16415-PA 124..363 46..276 226 36.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14506-PA 370 GG14506-PA 1..269 1..276 1065 81.2 Plus
Dere\GG14495-PA 479 GG14495-PA 125..371 46..276 400 49 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18729-PA 411 GH18729-PA 1..290 1..276 435 49.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
lbl-PB 294 CG6570-PB 1..294 1..294 1507 100 Plus
lbl-PA 372 CG6570-PA 1..269 1..276 1216 88.4 Plus
lbl-PC 410 CG6570-PC 1..269 1..276 1216 88.4 Plus
lbe-PA 479 CG6545-PA 98..371 7..276 497 45.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10819-PA 411 GI10819-PA 1..298 1..276 425 43.3 Plus
Dmoj\GI10818-PA 511 GI10818-PA 131..260 46..152 162 39.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24421-PA 442 GL24421-PA 1..289 1..276 554 52.7 Plus
Dper\GL24419-PA 468 GL24419-PA 135..357 52..276 212 35.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19692-PB 402 GA19692-PB 1..289 1..276 551 52.7 Plus
Dpse\GA19675-PA 468 GA19675-PA 135..357 52..276 207 35.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11007-PA 412 GM11007-PA 1..269 1..276 1120 85.9 Plus
Dsec\GM11006-PA 479 GM11006-PA 125..371 46..276 411 50.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19977-PA 412 GD19977-PA 1..269 1..276 1123 85.9 Plus
Dsim\GD19976-PA 479 GD19976-PA 125..371 46..276 411 50.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14418-PA 355 GJ14418-PA 1..261 1..276 472 49.7 Plus
Dvir\GJ14417-PA 516 GJ14417-PA 132..403 46..276 203 31.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11029-PA 424 GK11029-PA 16..281 7..276 543 52.4 Plus
Dwil\GK11027-PA 463 GK11027-PA 120..353 46..276 201 36 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11064-PA 236 GE11064-PA 1..234 1..234 1029 90.2 Plus
Dyak\GE24976-PA 405 GE24976-PA 1..269 1..276 985 80.4 Plus
Dyak\GE24975-PA 473 GE24975-PA 119..365 46..276 403 49.6 Plus

IP08853.hyp Sequence

Translation from 143 to 1027

> IP08853.hyp
MPQRTPSPANSDVSVGSPSPPPLRSLNMKRLRLLRSPISLEHDRQKSSPV
RVKSFSIADILGRGHEEDRVEKKPERIAIPNALPGVPAPLALINERLQIP
LVPNCPPPAALHTFLSPALLHSYEQRLAWDYQRQLQEHFQAQAQLLRQMT
LNPAIIASEDGSSERSQRSSSSNGSTECCSPTQAEKVEKRSQEDRMEVPK
KSPEEQPKGASKSSGDTPLDALFQLSTKNFDEEQVSTSKRHSALRWNIFE
TSPKSKGTKGITNAGMNGKLSDLEKQAQVGVIVDVDVAIYTQHD*

IP08853.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
lbl-PB 294 CG6570-PB 1..294 1..294 1507 100 Plus
lbl-PA 372 CG6570-PA 1..269 1..276 1216 88.4 Plus
lbl-PC 410 CG6570-PC 1..269 1..276 1216 88.4 Plus
lbe-PA 479 CG6545-PA 98..371 7..276 497 45.9 Plus