Clone IP08862 Report

Search the DGRC for IP08862

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:88
Well:62
Vector:pOT2
Associated Gene/TranscriptE(spl)mgamma-HLH-RA
Protein status:IP08862.pep: gold
Preliminary Size:842
Sequenced Size:958

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8333 2005-01-01 Successful iPCR screen
HLHmgamma 2008-04-29 Release 5.5 accounting
HLHmgamma 2008-08-15 Release 5.9 accounting
HLHmgamma 2008-12-18 5.12 accounting

Clone Sequence Records

IP08862.complete Sequence

958 bp (958 high quality bases) assembled on 2005-08-25

GenBank Submission: BT022125

> IP08862.complete
AAGAGCTCAAAGAACTCAGCTTACATCGAAACTACAAAAAGAACAATAAG
AAACACACAAAATGTCGTCGCTACAAATGTCCGAGATGTCCAAGACCTAT
CAGTACCGCAAGGTGATGAAGCCCATGCTGGAGAGGAAGCGTCGTGCCAG
AATCAACAAGTGCCTGGACGAGCTAAAGGATCTTATGGTTGCCACCTTGG
AGTCCGAGGGCGAGCACGTCACCCGTTTGGAGAAAGCCGATATCCTGGAA
CTTACCGTCACCCATTTGCAAAAGATGAAGCAGCAGCGTCAGCACAAGCG
GGCTTCCGGCGATGAGAGCTTGACTCCGGCGGAGGGCTTCCGTTCCGGCT
ACATCCATGCCGTCAATGAGGTCTCCCGTTCACTCTCCCAGCTGCCCGGC
ATGAATGTCAGCCTAGGCACTCAGCTAATGACCCACCTGGGACAGCGCCT
CAATCAGATCCAGCCAGCAGAAAAGGAAGTCTTGCCGGTGACCGCTCCAC
TCTCCGTGCACATCGCCAATCGGGATGCCTACTCCGTGCCCATTTCGCCA
ATCTCCAGCTACGCCGGCAGTCCCAACTCCAATACCAGTTCGACCAGCCA
TTCCCTGTTGACCACCATCGATGTGACCAAGATGGAGGACGACAGCGAGG
ACGAGGAGAACGTCTGGCGTCCCTGGTAGATAGGATTACTTCACACCACA
ACTGAAAAAAAAAAAAACGAAGGAGAGATCATAGAAAGTAAAAGTCTTCC
GAGTCACTGGATTTCCACCAGTCGACTCCCACCTAGTTATAAGTAAACAC
CATAAACACACAAAGCTTTAGATGAGGACGCGCAGTTCATGTGATAACTA
AATAAATAATAAATTATATAGCTAAAATTGAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA

IP08862.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
HLHmgamma-RA 904 HLHmgamma-RA 25..904 1..880 4400 100 Plus
HLHmbeta-RA 1098 HLHmbeta-RA 146..243 83..180 400 93.8 Plus
HLHm3-RA 1422 HLHm3-RA 315..421 83..189 340 87.8 Plus
HLHmbeta-RA 1098 HLHmbeta-RA 269..321 206..258 160 86.7 Plus
HLHm3-RA 1422 HLHm3-RA 438..481 206..249 160 90.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 21822871..21823750 1..880 4340 99.5 Plus
chr3R 27901430 chr3R 21828689..21828864 258..83 460 84.1 Minus
chr3R 27901430 chr3R 21860161..21860267 82..188 430 93.5 Plus
chr3R 27901430 chr3R 21845016..21845182 83..249 415 83.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:57:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25999882..26000764 1..883 4415 100 Plus
3R 32079331 3R 26005703..26005878 258..83 460 84.1 Minus
3R 32079331 3R 26022029..26022195 83..249 430 83.8 Plus
3R 32079331 3R 26037177..26037283 82..188 430 93.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 25740713..25741595 1..883 4415 100 Plus
3R 31820162 3R 25778008..25778114 82..188 430 93.4 Plus
3R 31820162 3R 25746612..25746709 180..83 400 93.8 Minus
3R 31820162 3R 25762860..25762966 83..189 340 87.8 Plus
3R 31820162 3R 25746534..25746586 258..206 160 86.7 Minus
3R 31820162 3R 25762983..25763026 206..249 160 90.9 Plus
Blast to na_te.dros performed 2019-03-16 15:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 834..869 844..879 108 77.8 Plus

IP08862.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:01:56 Download gff for IP08862.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 21822871..21823712 1..842 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:38:08 Download gff for IP08862.complete
Subject Subject Range Query Range Percent Splice Strand
HLHmgamma-RA 1..618 62..679 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:52:16 Download gff for IP08862.complete
Subject Subject Range Query Range Percent Splice Strand
HLHmgamma-RA 1..618 62..679 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:03:40 Download gff for IP08862.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)mgamma-HLH-RA 1..618 62..679 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:32:56 Download gff for IP08862.complete
Subject Subject Range Query Range Percent Splice Strand
HLHmgamma-RA 1..618 62..679 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:35:39 Download gff for IP08862.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)mgamma-HLH-RA 1..618 62..679 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:26:41 Download gff for IP08862.complete
Subject Subject Range Query Range Percent Splice Strand
HLHmgamma-RA 25..842 1..818 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:52:16 Download gff for IP08862.complete
Subject Subject Range Query Range Percent Splice Strand
HLHmgamma-RA 25..842 1..818 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:40 Download gff for IP08862.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)mgamma-HLH-RA 32..911 1..880 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:32:57 Download gff for IP08862.complete
Subject Subject Range Query Range Percent Splice Strand
HLHmgamma-RA 25..842 1..818 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:39 Download gff for IP08862.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)mgamma-HLH-RA 32..911 1..880 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:01:56 Download gff for IP08862.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25999882..26000761 1..880 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:01:56 Download gff for IP08862.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25999882..26000761 1..880 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:01:56 Download gff for IP08862.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25999882..26000761 1..880 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:40 Download gff for IP08862.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21825604..21826483 1..880 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:11:31 Download gff for IP08862.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25740713..25741592 1..880 100   Plus

IP08862.hyp Sequence

Translation from 61 to 678

> IP08862.hyp
MSSLQMSEMSKTYQYRKVMKPMLERKRRARINKCLDELKDLMVATLESEG
EHVTRLEKADILELTVTHLQKMKQQRQHKRASGDESLTPAEGFRSGYIHA
VNEVSRSLSQLPGMNVSLGTQLMTHLGQRLNQIQPAEKEVLPVTAPLSVH
IANRDAYSVPISPISSYAGSPNSNTSSTSHSLLTTIDVTKMEDDSEDEEN
VWRPW*

IP08862.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:58:28
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mgamma-HLH-PA 205 CG8333-PA 1..205 1..205 1041 100 Plus
E(spl)mbeta-HLH-PA 195 CG14548-PA 6..195 8..205 475 50.5 Plus
E(spl)m7-HLH-PA 186 CG8361-PA 6..186 8..205 428 48.7 Plus
E(spl)m3-HLH-PA 224 CG8346-PA 4..224 8..205 353 42 Plus
E(spl)mdelta-HLH-PA 173 CG8328-PA 9..173 9..205 324 39.6 Plus

IP08862.pep Sequence

Translation from 61 to 678

> IP08862.pep
MSSLQMSEMSKTYQYRKVMKPMLERKRRARINKCLDELKDLMVATLESEG
EHVTRLEKADILELTVTHLQKMKQQRQHKRASGDESLTPAEGFRSGYIHA
VNEVSRSLSQLPGMNVSLGTQLMTHLGQRLNQIQPAEKEVLPVTAPLSVH
IANRDAYSVPISPISSYAGSPNSNTSSTSHSLLTTIDVTKMEDDSEDEEN
VWRPW*

IP08862.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16796-PA 205 GF16796-PA 11..205 11..205 944 95.4 Plus
Dana\GF18225-PA 200 GF18225-PA 6..196 8..205 498 51.9 Plus
Dana\GF16801-PA 180 GF16801-PA 6..136 8..147 401 57.1 Plus
Dana\GF16799-PA 224 GF16799-PA 4..135 8..130 362 57.9 Plus
Dana\GF16795-PA 182 GF16795-PA 9..182 9..205 341 40.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11450-PA 205 GG11450-PA 1..205 1..205 1090 100 Plus
Dere\GG12207-PA 195 GG12207-PA 6..195 8..205 499 51 Plus
Dere\GG11458-PA 186 GG11458-PA 6..139 8..149 409 57 Plus
Dere\GG11454-PA 226 GG11454-PA 4..226 8..205 355 41.5 Plus
Dere\GG11449-PA 173 GG11449-PA 9..173 9..205 330 39.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19452-PA 217 GH19452-PA 11..217 11..205 865 85.5 Plus
Dgri\GH18148-PA 210 GH18148-PA 6..210 8..205 489 47.9 Plus
Dgri\GH19458-PA 207 GH19458-PA 6..207 8..205 427 45.1 Plus
Dgri\GH19456-PA 228 GH19456-PA 4..136 8..130 359 55.2 Plus
Dgri\GH19451-PA 198 GH19451-PA 9..171 9..143 291 41.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)mgamma-HLH-PA 205 CG8333-PA 1..205 1..205 1041 100 Plus
E(spl)mbeta-HLH-PA 195 CG14548-PA 6..195 8..205 475 50.5 Plus
E(spl)m7-HLH-PA 186 CG8361-PA 6..186 8..205 428 48.7 Plus
E(spl)m3-HLH-PA 224 CG8346-PA 4..224 8..205 353 42 Plus
E(spl)mdelta-HLH-PA 173 CG8328-PA 9..173 9..205 324 39.6 Plus
E(spl)m8-HLH-PA 179 CG8365-PA 1..179 6..205 288 35 Plus
E(spl)m5-HLH-PA 178 CG6096-PA 12..178 9..205 266 34.5 Plus
dpn-PA 435 CG8704-PA 39..157 14..134 244 38.8 Plus
h-PB 337 CG6494-PB 32..144 16..134 208 37.8 Plus
h-PA 337 CG6494-PA 32..144 16..134 208 37.8 Plus
Hesr-PA 149 CG5927-PA 16..116 10..108 185 39.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24686-PA 217 GI24686-PA 1..217 1..205 949 86.2 Plus
Dmoj\GI22910-PA 210 GI22910-PA 6..210 8..205 471 47.9 Plus
Dmoj\GI24692-PA 207 GI24692-PA 6..207 8..205 428 46.3 Plus
Dmoj\GI24690-PA 229 GI24690-PA 4..138 8..130 354 54.4 Plus
Dmoj\GI24685-PA 185 GI24685-PA 9..185 9..205 315 37.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21815-PA 214 GL21815-PA 1..214 1..205 959 86.9 Plus
Dper\GL22021-PA 200 GL22021-PA 6..200 8..205 491 51.4 Plus
Dper\GL21822-PA 207 GL21822-PA 6..148 8..149 383 54.5 Plus
Dper\GL21819-PA 225 GL21819-PA 4..225 8..205 365 41.5 Plus
Dper\GL21813-PA 188 GL21813-PA 9..188 9..205 312 38.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20996-PA 214 GA20996-PA 1..214 1..205 955 86.4 Plus
Dpse\GA13073-PA 200 GA13073-PA 6..200 8..205 491 51.4 Plus
Dpse\GA21018-PA 206 GA21018-PA 6..146 8..147 377 54.5 Plus
Dpse\GA21008-PA 219 GA21008-PA 4..219 8..205 374 42.6 Plus
Dpse\GA20991-PA 188 GA20991-PA 9..188 9..205 312 38.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10294-PA 205 GM10294-PA 1..205 1..205 1086 99.5 Plus
Dsec\GM10206-PA 195 GM10206-PA 6..195 8..205 502 51 Plus
Dsec\GM10299-PA 186 GM10299-PA 6..139 8..149 405 56.3 Plus
Dsec\GM10297-PA 221 GM10297-PA 4..221 8..205 362 41.5 Plus
Dsec\GM10293-PA 173 GM10293-PA 9..173 9..205 328 39.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\HLHmgamma-PA 205 GD21258-PA 1..205 1..205 1086 99.5 Plus
Dsim\HLHmbeta-PA 195 GD18157-PA 6..195 8..205 499 51 Plus
Dsim\HLHm7-PA 186 GD21263-PA 6..139 8..149 409 57 Plus
Dsim\HLHm3-PA 224 GD21261-PA 4..224 8..205 361 40.6 Plus
Dsim\HLHmdelta-PA 173 GD21257-PA 9..173 9..205 328 39.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:09:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23903-PA 217 GJ23903-PA 1..217 1..205 958 87.1 Plus
Dvir\GJ23323-PA 209 GJ23323-PA 6..209 8..205 492 52.7 Plus
Dvir\GJ23909-PA 197 GJ23909-PA 6..197 8..205 415 49.3 Plus
Dvir\GJ23906-PA 220 GJ23906-PA 4..220 8..205 369 42.7 Plus
Dvir\GJ23902-PA 188 GJ23902-PA 9..188 9..205 326 38.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:09:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14455-PA 209 GK14455-PA 1..209 1..205 943 86.7 Plus
Dwil\GK14459-PA 200 GK14459-PA 6..200 8..205 481 53.2 Plus
Dwil\GK12809-PA 201 GK12809-PA 6..201 8..205 468 49.1 Plus
Dwil\GK14458-PA 223 GK14458-PA 4..223 8..205 365 42.1 Plus
Dwil\GK14454-PA 184 GK14454-PA 9..184 9..205 321 39.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HLHmgamma-PA 205 GE23644-PA 1..205 1..205 1082 99 Plus
Dyak\HLHmbeta-PA 195 GE10652-PA 6..195 8..205 503 50.5 Plus
Dyak\HLHm7-PA 186 GE23649-PA 6..139 8..149 409 57 Plus
Dyak\GE23647-PA 224 GE23647-PA 4..224 8..205 362 41.5 Plus
Dyak\HLHmdelta-PA 173 GE23643-PA 9..173 9..205 326 39.1 Plus