Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
IP09281.complete Sequence
1279 bp (1279 high quality bases) assembled on 2006-04-14
GenBank Submission: BT025123
> IP09281.complete
AATTAAAGTACAAAACAGGAACAGAGTTCTTTCTTAGTCATGGAACTTGA
AAACGTTAAAAGTTTGGGGGAAATTGCTAAATGTGCAAAGATGCCATTAA
ACGAAATGGATCTCATATCCCGAACTTCGAAATGTGGAAAAAGTGTTTTA
GAAATCTTCGACGTCGATGAGAAGGTCAGTTTCTCATATGATGGAGGTGA
GGAGGAAGAAATGGATATTCTCGATCGTTCAGAGCAGTCTGATGATCGAC
CAGTGAAAATGGCACACGATATTGACTGCCTGATTCGACAGATTGAGCTT
ATGCAAATAGCGATTAGGAAGCGTCAAGTTAAGAAGTGCAGCGAAGAAAT
TAGCGAAGAAACTGCTGAAATAGAAATAGAAGCCGGTGCTCAAGTAAAGT
GCAAACAGCGGAAAAACCAAGGAATCGACATTAAGATTAAGGAAAAGTCT
GTAGCCATTTGTCCGAATAACCAACCTTTGTGCGGCAATGAATTGCTGGA
AGCCAGGAGTCTTCGTCAGGCCCACAATCGCATTCAATTGCAAATAGACG
AACTGATCTGCAGGTATAGGAAACTCCGCGAAATCATCCACCAAATGCGC
GAAAGGATTCGCTGCATGGAAGGCAATCTTATAGATTTAAATTCTGAAGC
CGTTAAGTATGTAGCTTGGTCCAGCGAAGTTTCCAAGGAACTGAAGTTGT
GCCAGGAGCGATACAATTACCTTGTCAATGCCAAGATGTCCAAAGCGGAT
GCAAAAAAACTAGACCACGCTCACACCACACGATTCCTTAAACAAAATGC
AGCTTGCCTTTCCAAAAGTCGTCTAAAGCGCGAAATCGCTGATTTCAATG
GCGAGGTCAAGGATCTTGTGAATCTAATGAGTGAATTGCACAAGGAACTG
GATCGGAATATGGCTGTTTTCGAATCACGGCATTCGAATTTTCTTGATGA
TCCAGAAGAGTTTCTATCATCCTTGACTGTGACGGTTAGACTATCCGATG
AGTTCCGGAAGTCACAAATGAAACTTGAAGACAGCGCCAATTAGAATTTG
ATCATTAAAATAGCTTTATTTATTGTTAAGGGAAATATTTCATATTAGCA
CCATTATTTCGACCAAAAATTACTAATAATAAAAATATATAAATCGGTCT
TCGTATTAAAAACAATAAAAATAAATTACGTAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
IP09281.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:28:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14556-RB | 1185 | CG14556-RB | 1..1185 | 1..1185 | 5925 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:14:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 21949694..21950874 | 1..1181 | 5905 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:57:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:14:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26126688..26127872 | 1..1185 | 5925 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:19:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 25867519..25868703 | 1..1185 | 5925 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-16 19:14:33 has no hits.
IP09281.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:15:16 Download gff for
IP09281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 21949694..21950874 | 1..1181 | 97 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:38:58 Download gff for
IP09281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14556-RB | 1..1005 | 40..1044 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:50:44 Download gff for
IP09281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14556-RB | 1..1005 | 40..1044 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:34:18 Download gff for
IP09281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14556-RB | 1..1005 | 40..1044 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:31:28 Download gff for
IP09281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14556-RB | 1..1005 | 40..1044 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:24:39 Download gff for
IP09281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14556-RB | 1..1005 | 40..1044 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:24:26 Download gff for
IP09281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14556-RB | 1..1181 | 1..1181 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:50:43 Download gff for
IP09281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14556-RB | 1..1181 | 1..1181 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:18 Download gff for
IP09281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14556-RB | 30..1210 | 1..1181 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:31:28 Download gff for
IP09281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14556-RB | 1..1181 | 1..1181 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:24:39 Download gff for
IP09281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14556-RB | 30..1210 | 1..1181 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:15:16 Download gff for
IP09281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26126688..26127868 | 1..1181 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:15:16 Download gff for
IP09281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26126688..26127868 | 1..1181 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:15:16 Download gff for
IP09281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26126688..26127868 | 1..1181 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:18 Download gff for
IP09281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21952410..21953590 | 1..1181 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:09:55 Download gff for
IP09281.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25867519..25868699 | 1..1181 | 100 | | Plus |
IP09281.pep Sequence
Translation from 39 to 1043
> IP09281.pep
MELENVKSLGEIAKCAKMPLNEMDLISRTSKCGKSVLEIFDVDEKVSFSY
DGGEEEEMDILDRSEQSDDRPVKMAHDIDCLIRQIELMQIAIRKRQVKKC
SEEISEETAEIEIEAGAQVKCKQRKNQGIDIKIKEKSVAICPNNQPLCGN
ELLEARSLRQAHNRIQLQIDELICRYRKLREIIHQMRERIRCMEGNLIDL
NSEAVKYVAWSSEVSKELKLCQERYNYLVNAKMSKADAKKLDHAHTTRFL
KQNAACLSKSRLKREIADFNGEVKDLVNLMSELHKELDRNMAVFESRHSN
FLDDPEEFLSSLTVTVRLSDEFRKSQMKLEDSAN*
IP09281.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:57:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF20335-PA | 332 | GF20335-PA | 26..298 | 8..292 | 194 | 25.6 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:57:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG18510-PA | 334 | GG18510-PA | 21..294 | 4..288 | 173 | 22.6 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:57:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH24276-PA | 326 | GH24276-PA | 14..324 | 6..296 | 362 | 31 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14556-PB | 334 | CG14556-PB | 1..334 | 1..334 | 1695 | 100 | Plus |
CG15468-PA | 290 | CG15468-PA | 66..248 | 119..301 | 194 | 25.8 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:57:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI21587-PA | 334 | GI21587-PA | 11..308 | 7..287 | 358 | 32.9 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:57:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA13078-PB | 342 | GA13078-PB | 6..302 | 12..302 | 424 | 35.2 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:57:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM10308-PA | 509 | GM10308-PA | 61..306 | 37..280 | 1126 | 88.2 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:57:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ15807-PA | 341 | GJ15807-PA | 12..341 | 7..318 | 393 | 33.6 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:57:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK24905-PA | 286 | GK24905-PA | 11..281 | 9..307 | 226 | 27 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:57:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE23656-PA | 521 | GE23656-PA | 79..318 | 38..280 | 827 | 68.3 | Plus |
Dyak\GE16827-PA | 351 | GE16827-PA | 21..294 | 4..288 | 174 | 22 | Plus |
IP09281.hyp Sequence
Translation from 39 to 1043
> IP09281.hyp
MELENVKSLGEIAKCAKMPLNEMDLISRTSKCGKSVLEIFDVDEKVSFSY
DGGEEEEMDILDRSEQSDDRPVKMAHDIDCLIRQIELMQIAIRKRQVKKC
SEEISEETAEIEIEAGAQVKCKQRKNQGIDIKIKEKSVAICPNNQPLCGN
ELLEARSLRQAHNRIQLQIDELICRYRKLREIIHQMRERIRCMEGNLIDL
NSEAVKYVAWSSEVSKELKLCQERYNYLVNAKMSKADAKKLDHAHTTRFL
KQNAACLSKSRLKREIADFNGEVKDLVNLMSELHKELDRNMAVFESRHSN
FLDDPEEFLSSLTVTVRLSDEFRKSQMKLEDSAN*
IP09281.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:01:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14556-PB | 334 | CG14556-PB | 1..334 | 1..334 | 1695 | 100 | Plus |
SIP3-PA | 290 | CG15468-PA | 66..248 | 119..301 | 194 | 25.8 | Plus |