Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
IP09423.complete Sequence
1002 bp (1002 high quality bases) assembled on 2005-06-08
GenBank Submission: BT023584
> IP09423.complete
AACATTCCCAGTTTTCAAGGAAAATACACCCACGTTCTCATTATATCAAT
AATACATATATTCTTTATTTGTTGGTAACTGATGGCAAAGATGTCCAAGT
CATCGCGTAGCTTCAAGCTGCCACCAGTCAGCTCCTCTTCCGTGTCCTCG
GTCTCCGGCAGCGAATCCGGGCAAGGATTGGAAGACATGTTGCACGTGAC
AAAGGTGCGAACTTCCCAGGTGGACAACGCAGAGCTTTTCATGTACGGCG
ACGGGCCCAAAAAATCGAATTCAGATCTGCAGAAAAAGGTCAGTACACCC
GATCCGGAAGAGGAGGTGTCAATGGAACCACCATTTGTGGCATTGGTCAG
CAATTTGCCAATGGAGTGCACTGAAGGCGAGTTGCGGAAAGTGTTCACCA
GTTTTTCGATCCGTTCTCTAACCATTCCGAAGAAGGGAAAGCGACCCAAG
GGATTTGCGTATGTGGAAATGGATTCCCGCGAGGATCTCGTTCGTCTGCT
CAAAATGGATAAGCTTAAGTGCCGTGGTCGTTGTCTTATGGCCAAAATAG
GCCAATTGCCACCCGAACCACCGACAAAGGCAGCTGGAGATGGCTTTTCA
TTATTTACTTGTTCAGGCAGGCAATTTGATATAAACTCTAGCCATTATTC
GGCCAGTGTCAGTGATCTCAGCACCATCGATTCGCCAATCTCTGCGAGGA
ACTCACCATTTCCTTCGGAAAGTGAGTCGTCCTTTTTCGGCAGGGATAAT
CCTATAAAAAGAATTCCTAGTAGCACTGAGGAAGTGGAACGCCGTATGCA
AATTCGTCTTCAGAAACTAGCCGAATTCGAAAATTCTGAATCGGAGAGAA
TTAAGAGTGAATGCGAGGATGATCCGGATGCCTTCATGTCCTGGAGCGAT
GCCCTAGACGAGATTAGAAAATCTGAAACTGATTCCTCAAATCATACTGA
ATCCTAGCAATAAAAGCATGATAATTGAATGTTCAAAAAAAAAAAAAAAA
AA
IP09423.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:36:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11726-RA | 984 | CG11726-RA | 1..984 | 1..984 | 4920 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:00:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chr3L | 24539361 | chr3L | 11385514..11386497 | 1..984 | 4695 | 98.5 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:58:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:00:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11394690..11395677 | 1..988 | 4940 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:26:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28103327 | 3L | 11387790..11388777 | 1..988 | 4940 | 100 | Plus |
Blast to na_te.dros performed 2019-03-16 07:00:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| copia | 5143 | copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). | 3643..3710 | 94..25 | 128 | 68.6 | Minus |
IP09423.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:00:45 Download gff for
IP09423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chr3L | 11385514..11386497 | 1..984 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:39:41 Download gff for
IP09423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11726-RA | 1..876 | 82..957 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:01:09 Download gff for
IP09423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11726-RA | 1..876 | 82..957 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:29:11 Download gff for
IP09423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11726-RA | 1..876 | 82..957 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:41:43 Download gff for
IP09423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11726-RA | 1..876 | 82..957 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:27:21 Download gff for
IP09423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11726-RA | 1..876 | 82..957 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:44:41 Download gff for
IP09423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11726-RA | 1..876 | 82..957 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:01:09 Download gff for
IP09423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11726-RA | 1..984 | 1..984 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:11 Download gff for
IP09423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11726-RA | 1..984 | 1..984 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:41:43 Download gff for
IP09423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11726-RA | 1..876 | 82..957 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:27:21 Download gff for
IP09423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11726-RA | 1..984 | 1..984 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:00:45 Download gff for
IP09423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11394690..11395673 | 1..984 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:00:45 Download gff for
IP09423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11394690..11395673 | 1..984 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:00:45 Download gff for
IP09423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11394690..11395673 | 1..984 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:11 Download gff for
IP09423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11387790..11388773 | 1..984 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:20:40 Download gff for
IP09423.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11387790..11388773 | 1..984 | 100 | | Plus |
IP09423.hyp Sequence
Translation from 81 to 956
> IP09423.hyp
MAKMSKSSRSFKLPPVSSSSVSSVSGSESGQGLEDMLHVTKVRTSQVDNA
ELFMYGDGPKKSNSDLQKKVSTPDPEEEVSMEPPFVALVSNLPMECTEGE
LRKVFTSFSIRSLTIPKKGKRPKGFAYVEMDSREDLVRLLKMDKLKCRGR
CLMAKIGQLPPEPPTKAAGDGFSLFTCSGRQFDINSSHYSASVSDLSTID
SPISARNSPFPSESESSFFGRDNPIKRIPSSTEEVERRMQIRLQKLAEFE
NSESERIKSECEDDPDAFMSWSDALDEIRKSETDSSNHTES*
IP09423.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:03:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11726-PA | 291 | CG11726-PA | 1..291 | 1..291 | 1484 | 100 | Plus |
IP09423.pep Sequence
Translation from 81 to 956
> IP09423.pep
MAKMSKSSRSFKLPPVSSSSVSSVSGSESGQGLEDMLHVTKVRTSQVDNA
ELFMYGDGPKKSNSDLQKKVSTPDPEEEVSMEPPFVALVSNLPMECTEGE
LRKVFTSFSIRSLTIPKKGKRPKGFAYVEMDSREDLVRLLKMDKLKCRGR
CLMAKIGQLPPEPPTKAAGDGFSLFTCSGRQFDINSSHYSASVSDLSTID
SPISARNSPFPSESESSFFGRDNPIKRIPSSTEEVERRMQIRLQKLAEFE
NSESERIKSECEDDPDAFMSWSDALDEIRKSETDSSNHTES*
IP09423.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:57:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dana\GF25260-PA | 283 | GF25260-PA | 27..281 | 38..282 | 510 | 46.2 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:57:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dere\GG15497-PA | 280 | GG15497-PA | 1..278 | 4..282 | 1152 | 83.6 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:57:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dgri\GH18041-PA | 405 | GH18041-PA | 71..154 | 76..156 | 156 | 32.1 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11726-PA | 291 | CG11726-PA | 1..291 | 1..291 | 1484 | 100 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:57:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dper\GL22783-PA | 274 | GL22783-PA | 8..272 | 6..282 | 359 | 39.3 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:57:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dpse\GA11163-PA | 398 | GA11163-PA | 130..396 | 6..282 | 343 | 37.7 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:57:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsec\GM25268-PA | 286 | GM25268-PA | 1..284 | 1..282 | 1127 | 91.9 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:57:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsim\GD14302-PA | 283 | GD14302-PA | 1..281 | 4..282 | 1151 | 91.1 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:57:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\GE21806-PA | 281 | GE21806-PA | 1..279 | 4..282 | 1134 | 82.8 | Plus |
