Clone IP09428 Report

Search the DGRC for IP09428

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:94
Well:28
Vector:pOT2
Associated Gene/TranscriptCG12477-RA
Protein status:IP09428.pep: gold
Preliminary Size:798
Sequenced Size:1351

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12477 2008-04-29 Release 5.5 accounting
CG12477 2008-08-15 Release 5.9 accounting
CG12477 2008-12-18 5.12 accounting

Clone Sequence Records

IP09428.complete Sequence

1351 bp (1351 high quality bases) assembled on 2006-03-22

GenBank Submission: BT024995

> IP09428.complete
AAAGAACAAAGTTGAATTTTCTGATTGTACTCGGCATTAAAGATTGTTCG
ACTTAAAAAAAAAAAAACCAATCCAATAGAGCAGCAAAAAATGAGTACAG
TCGCAAGCAACGATCAGCACGTGGACACCGGCGTATTGCCGGTGCCCAGC
ACGAACAGCCCTAGCTCCCAGATCGAGCAGAAGGGCAATGAAGCAATCGT
GCCCAACTACAAGGCTGCTACTGCCGGCGAGCAGGGCGAGGCACAGGCTG
GAGCTACCTGCACTACAGTCGCTGTTCGTCCGTCAGGTGTTGCCACCTCT
GCCGACATAGTGAAAGGGTCATCATCTGTGAGCAGCCACGTGCAGCCGTC
ATGGCGGAGCTCCTTCGCCAGGTCCCAGGACAAGAAGTGCGGCATTTGCT
TCGAGACGATCATGGAGAAGGAGGGAGGAGATAAGCGTTTCGGCATCCTG
CCCAGCTGCAACCACGTGTTCTGCTTCCAGTGCATTTGCACATGGCGTCA
TGCCACACAGTATGCCTATCAAGTGACGCGAGCTTGCCCCGAATGTCGCG
TGTGGTCTAACTTTGTATGTCCCAGTGCATTTTGGGTGGAGGAAAAGGTG
GCGAAGGACCAGCTCATCAATGATCACCTCGCCGCTATGCGTGCAAGGGA
CTGCAAGTACTTTAAACAAGGACAAGGCGTGTGCCTCTTTGGCAACAAGT
GTTTTTACAAGCACTCTATACCCAACGCAGATTACGTCGATGTGGGATTG
CCGACCCATGCTCTAGGGCTACCGATTCCATCAGATTTTTCGGGACTTGG
CAATTGTCTTATTTTGGTTCCTTTCCCGAATATGTTTTTTGATGATTTCA
GCAATTCCGACGACTACGATTTCTCGGACGTAAACTAGTCTGACGAAACG
GGAGGAGATGAGAAAAAAACCAAGTTAATAATCCACGAAATGAAGCGATG
TATTGTATGTAGCTGCCAAATTTTGCTTACAGAACAATCATTCACCACTT
AATTCCAAGAAATTTGGGACACTTTTTGCATGCATTAAATTTTGACTTGC
ATTAAATTTCATTCACAAGTGGCTTATCCTTAAACTGAACTGAACTGAAT
ATGAGTATCAATAGCTTTAAATGCGCTAAGCAGTGAAAATTACATTTTGA
AAATAGGTGCTGGTCTGGAATTTACAACTGATAACCTGCAAGCCTGCAGG
CATTTAATATCAAAAAATCAATGTATTAACCTAGCAGTAACTTATCCCTT
TTGGAGAATTTTCCTTTTCAAAATGAATCTCTATGAAATGTATTTTTATA
CAATTAAATAAAGGGGACTAAAATGAAAAAAAAAAAAAAAAAAAAAAAAA
A

IP09428.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG12477-RA 1390 CG12477-RA 66..1390 1..1325 6625 100 Plus
Mkrn1-RB 2173 Mkrn1-RB 754..1141 367..754 860 81.4 Plus
Mkrn1.a 2270 Mkrn1.a 826..1213 367..754 860 81.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:17:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 18711552..18712796 1325..81 6180 99.8 Minus
chr3L 24539361 chr3L 21520743..21520967 754..530 495 81.3 Minus
chr3L 24539361 chr3L 18712848..18712931 84..1 420 100 Minus
chr3L 24539361 chr3L 21521293..21521437 511..367 395 84.8 Minus
chrX 22417052 chrX 14667630..14667872 367..609 270 74.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:58:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:17:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18721889..18723137 1329..81 6245 100 Minus
3L 28110227 3L 21531808..21532032 754..530 495 81.3 Minus
3L 28110227 3L 18723189..18723272 84..1 420 100 Minus
3L 28110227 3L 21532358..21532502 511..367 395 84.8 Minus
X 23542271 X 14777334..14777576 367..609 270 74.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 18714989..18716237 1329..81 6245 100 Minus
3L 28103327 3L 21524908..21525132 754..530 495 81.3 Minus
3L 28103327 3L 18716289..18716372 84..1 420 100 Minus
3L 28103327 3L 21525458..21525602 511..367 395 84.8 Minus
X 23527363 X 14785432..14785569 367..504 240 78.2 Plus
Blast to na_te.dros performed 2019-03-16 01:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
McClintock 6450 McClintock McCLINTOCK 6450bp 403..431 44..72 118 89.7 Plus
McClintock 6450 McClintock McCLINTOCK 6450bp 6355..6383 44..72 118 89.7 Plus

IP09428.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:18:43 Download gff for IP09428.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 18711552..18712792 85..1325 99 <- Minus
chr3L 18712848..18712931 1..84 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:39:48 Download gff for IP09428.complete
Subject Subject Range Query Range Percent Splice Strand
CG12477-RA 1..798 91..888 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:05:36 Download gff for IP09428.complete
Subject Subject Range Query Range Percent Splice Strand
CG12477-RA 1..798 91..888 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:05:00 Download gff for IP09428.complete
Subject Subject Range Query Range Percent Splice Strand
CG12477-RA 1..798 91..888 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:50:42 Download gff for IP09428.complete
Subject Subject Range Query Range Percent Splice Strand
CG12477-RA 1..798 91..888 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:30:37 Download gff for IP09428.complete
Subject Subject Range Query Range Percent Splice Strand
CG12477-RA 1..798 91..888 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:53:47 Download gff for IP09428.complete
Subject Subject Range Query Range Percent Splice Strand
CG12477-RA 1..798 91..888 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:05:36 Download gff for IP09428.complete
Subject Subject Range Query Range Percent Splice Strand
CG12477-RA 1..1325 1..1325 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:05:00 Download gff for IP09428.complete
Subject Subject Range Query Range Percent Splice Strand
CG12477-RA 1..1325 1..1325 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:50:42 Download gff for IP09428.complete
Subject Subject Range Query Range Percent Splice Strand
CG12477-RA 1..798 91..888 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:30:37 Download gff for IP09428.complete
Subject Subject Range Query Range Percent Splice Strand
CG12477-RA 1..1325 1..1325 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:18:43 Download gff for IP09428.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18721893..18723133 85..1325 100 <- Minus
3L 18723189..18723272 1..84 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:18:43 Download gff for IP09428.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18721893..18723133 85..1325 100 <- Minus
3L 18723189..18723272 1..84 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:18:43 Download gff for IP09428.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18721893..18723133 85..1325 100 <- Minus
3L 18723189..18723272 1..84 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:05:00 Download gff for IP09428.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18714993..18716233 85..1325 100 <- Minus
arm_3L 18716289..18716372 1..84 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:25:26 Download gff for IP09428.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18714993..18716233 85..1325 100 <- Minus
3L 18716289..18716372 1..84 100   Minus

IP09428.pep Sequence

Translation from 90 to 887

> IP09428.pep
MSTVASNDQHVDTGVLPVPSTNSPSSQIEQKGNEAIVPNYKAATAGEQGE
AQAGATCTTVAVRPSGVATSADIVKGSSSVSSHVQPSWRSSFARSQDKKC
GICFETIMEKEGGDKRFGILPSCNHVFCFQCICTWRHATQYAYQVTRACP
ECRVWSNFVCPSAFWVEEKVAKDQLINDHLAAMRARDCKYFKQGQGVCLF
GNKCFYKHSIPNADYVDVGLPTHALGLPIPSDFSGLGNCLILVPFPNMFF
DDFSNSDDYDFSDVN*

IP09428.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10705-PA 396 GF10705-PA 217..378 91..261 539 55 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15726-PA 285 GG15726-PA 1..259 1..257 780 58.8 Plus
Dere\GG13225-PA 378 GG13225-PA 197..361 91..264 515 52.3 Plus
Dere\GG17851-PA 290 GG17851-PA 155..273 91..208 396 58.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14787-PA 386 GH14787-PA 207..381 91..263 537 56.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12477-PA 265 CG12477-PA 1..265 1..265 1442 100 Plus
Mkrn1-PC 386 CG7184-PC 205..384 91..263 544 54.4 Plus
Mkrn1-PB 386 CG7184-PB 205..384 91..263 544 54.4 Plus
Mkrn1-PA 386 CG7184-PA 205..384 91..263 544 54.4 Plus
CG5347-PA 285 CG5347-PA 55..268 18..208 438 43.9 Plus
CG5334-PA 210 CG5334-PA 74..191 91..208 397 56.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11841-PA 391 GI11841-PA 212..348 91..227 529 65.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11888-PA 185 GL11888-PA 6..170 91..264 529 53.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20164-PA 367 GA20164-PA 188..352 91..264 532 53.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14923-PA 266 GM14923-PA 1..242 1..242 953 76 Plus
Dsec\GM22131-PA 386 GM22131-PA 205..366 91..261 541 55 Plus
Dsec\GM12045-PA 289 GM12045-PA 155..272 91..208 412 58.5 Plus
Dsec\GM12044-PA 212 GM12044-PA 48..196 67..215 383 46.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12329-PA 259 GD12329-PA 1..238 1..241 932 75.1 Plus
Dsim\GD12110-PA 386 GD12110-PA 205..366 91..261 541 55 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13540-PA 390 GJ13540-PA 211..375 91..264 534 54 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20382-PA 394 GK20382-PA 215..390 91..259 546 56.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22057-PA 269 GE22057-PA 1..254 1..250 735 56.5 Plus
Dyak\GE22322-PA 382 GE22322-PA 201..365 91..264 544 54.6 Plus
Dyak\GE17153-PA 293 GE17153-PA 159..277 91..209 424 62.2 Plus

IP09428.hyp Sequence

Translation from 90 to 887

> IP09428.hyp
MSTVASNDQHVDTGVLPVPSTNSPSSQIEQKGNEAIVPNYKAATAGEQGE
AQAGATCTTVAVRPSGVATSADIVKGSSSVSSHVQPSWRSSFARSQDKKC
GICFETIMEKEGGDKRFGILPSCNHVFCFQCICTWRHATQYAYQVTRACP
ECRVWSNFVCPSAFWVEEKVAKDQLINDHLAAMRARDCKYFKQGQGVCLF
GNKCFYKHSIPNADYVDVGLPTHALGLPIPSDFSGLGNCLILVPFPNMFF
DDFSNSDDYDFSDVN*

IP09428.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG12477-PA 265 CG12477-PA 1..265 1..265 1442 100 Plus
Mkrn1-PC 386 CG7184-PC 205..384 91..263 544 54.4 Plus
Mkrn1-PB 386 CG7184-PB 205..384 91..263 544 54.4 Plus
Mkrn1-PA 386 CG7184-PA 205..384 91..263 544 54.4 Plus
CG5347-PA 285 CG5347-PA 55..268 18..208 438 43.9 Plus