Clone IP09433 Report

Search the DGRC for IP09433

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:94
Well:33
Vector:pOT2
Associated Gene/TranscriptCG12620-RA
Protein status:IP09433.pep: gold
Preliminary Size:862
Sequenced Size:1203

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12620 2005-01-01 Successful iPCR screen
CG12620 2008-04-29 Release 5.5 accounting
CG12620 2008-08-15 Release 5.9 accounting
CG12620 2008-12-18 5.12 accounting

Clone Sequence Records

IP09433.complete Sequence

1203 bp (1203 high quality bases) assembled on 2005-03-06

GenBank Submission: BT023174

> IP09433.complete
CTTAAACGTATAAACATTTTATATATCCCAAAAATAAGAAGTAGAACCTA
AAAAAAAAAAACAAACACATTTTGTCTTATAACCATGACGACTAAAAGAA
CAAGGTTCGATAAAATGAACCTGGGAGTACCCGTTCACTCGGACCCCTAT
GAAGTGGAAAATGAATCGGCCTCGTCAATAAAAAGAGAAACCGGCGAGAA
GGTCATGTCTCATAAGGAGCTAATGGAAAAACTGCATAAGGAGGTGAAGC
TCACGACGCCGGACTTCTTCGCCCATGATCCATCCTGCAGCTCGGACGAC
TCCGAAGATTTCGAATTCCTGGAGACTATCAAAGAGCGAGCCAGACGCAT
ATCCTTCGTACGACGCCGAAAGCTGCACTACACTGAGTTCTCAACGGTCG
AGTTGGCCAGGCGTCTGATCCGCGAGGAGTTCACAGAGTCATCGGAGAGT
CAACTAAGCGTGGATGATGAACATATCTCCGAGATCGCCGAAGAGGAGTG
TCCGCCCTGCGGCACAGACTCCGACGACTTACTTCCGTACTTCCAATACG
ATCGGGCTACAGACCAATCGATGATTTCCGACGACAGTCTGCCAAAGGAG
GATCCCGAGCCCGGATTCCATCCCGCCCATCATTGCTATAATAAGCTTAT
AAGCCAGACTCCTGATCCGCCGATAGTGTACGTTCCCGCGGAACCAGAAC
CGCAACCGGAACCGCAACCGGAACCGCCAGTGGAACCGCGACCGGAACCG
GAACCAGAACCAGAACCGGAAACAGTACTACCACCAACTGCTCCGGAAGT
CATTGATAAAACAGCTCCAGAAGAAGAAAAACACACTAGGGTCCTTGACC
GTGGCGAAAATATTGACCTAAAGAATTTGAGCGCCATACAGAAAAACATA
AGTTCGAGTGTGAAAAAACATACTGGTCAAAAAACGCGAAATTTATAAAC
TTAAATTGATTGATGCAATTGATGTATATGGGATCCCATTTCTCATTGTG
CATTAGATTAGTGTTGCCTAAATTAAGAAAATGTTTCGTTGGCTGGAAAT
CAAAATCCAATCCGTATAGCCCAAATGCTGCGAATGTTTTTACTTCATAT
TCCAGAAGTTATATAAGGCTTTATTTTAATCGTAAAGTCAAATAAACCCA
TATTCGTAAATGCATACAAGCTAATGTAGACACCAAAAAAAAAAAAAAAA
AAA

IP09433.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG12620-RA 1184 CG12620-RA 1..1184 1..1184 5920 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 17086289..17087472 1..1184 5920 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:58:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17087641..17088827 1..1187 5935 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17087641..17088827 1..1187 5935 100 Plus
Blast to na_te.dros performed 2019-03-16 17:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 1273..1320 23..70 132 75 Plus

IP09433.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:15:35 Download gff for IP09433.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 17086289..17086979 1..691 100 == Plus
chr2L 17087060..17087472 772..1184 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:39:49 Download gff for IP09433.complete
Subject Subject Range Query Range Percent Splice Strand
CG12620-RA 1..864 85..948 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:17:42 Download gff for IP09433.complete
Subject Subject Range Query Range Percent Splice Strand
CG12620-RA 1..864 85..948 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:53:34 Download gff for IP09433.complete
Subject Subject Range Query Range Percent Splice Strand
CG12620-RA 1..864 85..948 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:02:02 Download gff for IP09433.complete
Subject Subject Range Query Range Percent Splice Strand
CG12620-RA 1..864 85..948 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:54:54 Download gff for IP09433.complete
Subject Subject Range Query Range Percent Splice Strand
CG12620-RA 1..864 85..948 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:17:19 Download gff for IP09433.complete
Subject Subject Range Query Range Percent Splice Strand
CG12620-RA 1..1184 1..1184 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:17:41 Download gff for IP09433.complete
Subject Subject Range Query Range Percent Splice Strand
CG12620-RA 1..1184 1..1184 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:53:34 Download gff for IP09433.complete
Subject Subject Range Query Range Percent Splice Strand
CG12620-RA 1..1184 1..1184 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:02:02 Download gff for IP09433.complete
Subject Subject Range Query Range Percent Splice Strand
CG12620-RA 1..1184 1..1184 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:54:54 Download gff for IP09433.complete
Subject Subject Range Query Range Percent Splice Strand
CG12620-RA 1..1184 1..1184 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:15:35 Download gff for IP09433.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17087641..17088824 1..1184 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:15:35 Download gff for IP09433.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17087641..17088824 1..1184 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:15:35 Download gff for IP09433.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17087641..17088824 1..1184 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:53:34 Download gff for IP09433.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17087641..17088824 1..1184 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:37:48 Download gff for IP09433.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17087641..17088824 1..1184 100   Plus

IP09433.pep Sequence

Translation from 84 to 947

> IP09433.pep
MTTKRTRFDKMNLGVPVHSDPYEVENESASSIKRETGEKVMSHKELMEKL
HKEVKLTTPDFFAHDPSCSSDDSEDFEFLETIKERARRISFVRRRKLHYT
EFSTVELARRLIREEFTESSESQLSVDDEHISEIAEEECPPCGTDSDDLL
PYFQYDRATDQSMISDDSLPKEDPEPGFHPAHHCYNKLISQTPDPPIVYV
PAEPEPQPEPQPEPPVEPRPEPEPEPEPETVLPPTAPEVIDKTAPEEEKH
TRVLDRGENIDLKNLSAIQKNISSSVKKHTGQKTRNL*

IP09433.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14784-PA 291 GF14784-PA 1..271 11..277 392 41.2 Plus
Dana\GF14783-PA 308 GF14783-PA 6..283 2..262 274 34.5 Plus
Dana\GF15110-PA 288 GF15110-PA 74..218 46..191 207 40.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21073-PA 293 GG21073-PA 1..293 1..287 1016 71.3 Plus
Dere\GG21754-PA 293 GG21754-PA 69..208 46..188 197 38.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:24:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10084-PA 240 GH10084-PA 21..216 3..192 145 33.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG12620-PB 287 CG12620-PB 1..287 1..287 1522 100 Plus
CG12620-PA 287 CG12620-PA 1..287 1..287 1522 100 Plus
CG6380-PB 293 CG6380-PB 22..251 4..237 259 30.9 Plus
CG6380-PA 293 CG6380-PA 22..251 4..237 259 30.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:24:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14265-PA 249 GI14265-PA 103..221 80..191 170 37.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:24:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19746-PA 262 GL19746-PA 67..220 39..195 225 42.5 Plus
Dper\GL14331-PA 233 GL14331-PA 96..220 80..196 201 39.2 Plus
Dper\GL22570-PA 281 GL22570-PA 65..224 39..195 175 37.2 Plus
Dper\GL22569-PA 281 GL22569-PA 65..224 39..195 175 37.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19552-PA 262 GA19552-PA 67..220 39..195 226 42.5 Plus
Dpse\GA25070-PA 233 GA25070-PA 96..220 80..196 201 39.2 Plus
Dpse\GA24711-PA 281 GA24711-PA 65..224 39..195 172 36.6 Plus
Dpse\GA24707-PA 281 GA24707-PA 65..224 39..195 172 36.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17223-PA 271 GM17223-PA 1..271 11..287 1081 85.2 Plus
Dsec\GM17136-PA 292 GM17136-PA 69..218 46..205 226 36.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24098-PA 273 GD24098-PA 1..273 11..287 1123 86.6 Plus
Dsim\GD21878-PA 293 GD21878-PA 69..219 46..205 222 36.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:24:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16238-PA 260 GJ16238-PA 71..245 46..211 191 36.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:24:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23801-PA 277 GK23801-PA 103..218 78..190 188 40 Plus
Dwil\GK23876-PA 186 GK23876-PA 59..175 78..190 146 35.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12782-PA 290 GE12782-PA 1..290 1..287 1011 73.8 Plus
Dyak\GE13145-PA 294 GE13145-PA 69..209 46..188 208 38.4 Plus

IP09433.hyp Sequence

Translation from 84 to 947

> IP09433.hyp
MTTKRTRFDKMNLGVPVHSDPYEVENESASSIKRETGEKVMSHKELMEKL
HKEVKLTTPDFFAHDPSCSSDDSEDFEFLETIKERARRISFVRRRKLHYT
EFSTVELARRLIREEFTESSESQLSVDDEHISEIAEEECPPCGTDSDDLL
PYFQYDRATDQSMISDDSLPKEDPEPGFHPAHHCYNKLISQTPDPPIVYV
PAEPEPQPEPQPEPPVEPRPEPEPEPEPETVLPPTAPEVIDKTAPEEEKH
TRVLDRGENIDLKNLSAIQKNISSSVKKHTGQKTRNL*

IP09433.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG12620-PB 287 CG12620-PB 1..287 1..287 1522 100 Plus
CG12620-PA 287 CG12620-PA 1..287 1..287 1522 100 Plus
CG6380-PB 293 CG6380-PB 22..251 4..237 259 30.9 Plus
CG6380-PA 293 CG6380-PA 22..251 4..237 259 30.9 Plus