Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
IP09436.complete Sequence
1159 bp (1159 high quality bases) assembled on 2005-06-08
GenBank Submission: BT023581
> IP09436.complete
TCGAGCATTTGGAACGTGAAAGCAGGCAGAGCAGGGAAGTGCACGAAGAG
CCAAGAAAAAATCAGAAAACTCCTCCATTATGGCATCTGGGTTCGTGAAC
AATAAGCGCAAGCGGGATGAAGCGCACAATCAGTTCATCTGTCCCATTGT
CTACACAAATGAGTTGCCCACTTATCCAAAGGATTGCAAGTTTCTGCCCT
GTGGCCAGAATATCCAGGAGTACTGCAAGGAGCCGGTTTCGATTCCCAAA
CTGGACACTTGTTTTTCGCTAAATTTCAAAGGACTTCATGAGCTATTCTC
CGTTAATTTGATGGATCAGTCGGCTTACGATAAGCTTTCCGAGAATGTGC
AGCCAATGAATCCCAGAGAAGCTGATCTACTTAAGGACATAAGAGCCCTA
GACTGGGACTTCGCCAGACTCGAACCAAGTCGCGCTCAGGAATGCGCCAA
GATGTTCGCCAAGGAGCGAGTGCATCCACCTCTCCCAGGACTACAGCGTT
CTGTGGCGGTGCCCAAGGCCCCAAAAGACCTGCAGCCGGTCAGCCTGGAG
CAACAAAAGGCGATGATTGATGCGAGCTTCAAGGATATTGGCAAACCCCT
CTACCGACATCCCACCAATCCGGGTAGCAATGCCTACCCTGTGCAGGTCT
TGCCAGTCTTTCCCGATACGGATTTGCAGAAATATAGCTTCGTCCAGATG
AGTTTTGATAATCCACCCCAAAATAGCAACCAGGGACTAATCAGGGACTG
CGGAAGCTGTCTGATCAACTTCAGTTTCGTCCAGGACATTGCGGACTCTA
CCGAAAAGGTTTACGTATCCGACCATCGCTACAGAGAGGAAAAAGCCGAC
GATAGCTTGGAGCGCGGTGAGGGTTACATACTCCGCGAGGAGAATGACGC
CATCTTTTACGTTGGTGTCGACAAATACATCAAATTAAGGCGGGAACGTC
CACGCCCACACGTTTCGGCTAACAAGTTTCTGCTGAAGGTCCAGCGTGTG
GGAATGAATACAACTACCGATTAAAGAACAATATAAGAACATTTAATTGG
ATGTACTTCAGAAGCTTATGTTATGAAAATAAAAATATCAAAATGCTTGG
TGGAAATTTTCCATCTGATGACCATTAAAATAATAAAAACAAAAAAAAAA
AAAAAAAAA
IP09436.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:36:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12674-RA | 1336 | CG12674-RA | 182..1324 | 1..1143 | 5715 | 100 | Plus |
CG12674.c | 2055 | CG12674.c | 182..1324 | 1..1143 | 5715 | 100 | Plus |
CG12674.b | 2052 | CG12674.b | 182..1321 | 1..1143 | 5645 | 99.7 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:23:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 2079937..2080795 | 127..985 | 4265 | 99.8 | Plus |
chr2L | 23010047 | chr2L | 2080860..2081015 | 985..1140 | 780 | 100 | Plus |
chr2L | 23010047 | chr2L | 2079726..2079851 | 1..126 | 630 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:58:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:23:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2080208..2081066 | 127..985 | 4295 | 100 | Plus |
2L | 23513712 | 2L | 2081131..2081289 | 985..1143 | 795 | 100 | Plus |
2L | 23513712 | 2L | 2079998..2080123 | 1..126 | 630 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:26:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2080208..2081066 | 127..985 | 4295 | 100 | Plus |
2L | 23513712 | 2L | 2081131..2081289 | 985..1143 | 795 | 100 | Plus |
2L | 23513712 | 2L | 2079998..2080123 | 1..126 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-15 15:23:28 has no hits.
IP09436.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:24:30 Download gff for
IP09436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 2079726..2079851 | 1..126 | 100 | -> | Plus |
chr2L | 2079937..2080795 | 127..985 | 99 | -> | Plus |
chr2L | 2080861..2081015 | 986..1140 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:39:50 Download gff for
IP09436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12674-RA | 1..945 | 80..1024 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:01:11 Download gff for
IP09436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12674-RA | 1..945 | 80..1024 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:26:54 Download gff for
IP09436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12674-RA | 1..945 | 80..1024 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:41:44 Download gff for
IP09436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12674-RA | 1..945 | 80..1024 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:04:45 Download gff for
IP09436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12674-RA | 1..945 | 80..1024 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:44:43 Download gff for
IP09436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12674-RA | 22..1161 | 1..1140 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:01:10 Download gff for
IP09436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12674-RA | 22..1161 | 1..1140 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:26:54 Download gff for
IP09436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12674-RA | 80..1219 | 1..1140 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:41:44 Download gff for
IP09436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12674-RA | 22..1161 | 1..1140 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:04:45 Download gff for
IP09436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12674-RA | 80..1219 | 1..1140 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:24:30 Download gff for
IP09436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2081132..2081286 | 986..1140 | 100 | | Plus |
2L | 2080208..2081066 | 127..985 | 100 | -> | Plus |
2L | 2079998..2080123 | 1..126 | 100 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:24:30 Download gff for
IP09436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2081132..2081286 | 986..1140 | 100 | | Plus |
2L | 2080208..2081066 | 127..985 | 100 | -> | Plus |
2L | 2079998..2080123 | 1..126 | 100 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:24:30 Download gff for
IP09436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2081132..2081286 | 986..1140 | 100 | | Plus |
2L | 2080208..2081066 | 127..985 | 100 | -> | Plus |
2L | 2079998..2080123 | 1..126 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:26:54 Download gff for
IP09436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2081132..2081286 | 986..1140 | 100 | | Plus |
arm_2L | 2079998..2080123 | 1..126 | 100 | -> | Plus |
arm_2L | 2080208..2081066 | 127..985 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:20:41 Download gff for
IP09436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2080208..2081066 | 127..985 | 100 | -> | Plus |
2L | 2081132..2081286 | 986..1140 | 100 | | Plus |
2L | 2079998..2080123 | 1..126 | 100 | -> | Plus |
IP09436.hyp Sequence
Translation from 79 to 1023
> IP09436.hyp
MASGFVNNKRKRDEAHNQFICPIVYTNELPTYPKDCKFLPCGQNIQEYCK
EPVSIPKLDTCFSLNFKGLHELFSVNLMDQSAYDKLSENVQPMNPREADL
LKDIRALDWDFARLEPSRAQECAKMFAKERVHPPLPGLQRSVAVPKAPKD
LQPVSLEQQKAMIDASFKDIGKPLYRHPTNPGSNAYPVQVLPVFPDTDLQ
KYSFVQMSFDNPPQNSNQGLIRDCGSCLINFSFVQDIADSTEKVYVSDHR
YREEKADDSLERGEGYILREENDAIFYVGVDKYIKLRRERPRPHVSANKF
LLKVQRVGMNTTTD*
IP09436.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:03:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12674-PA | 314 | CG12674-PA | 1..314 | 1..314 | 1672 | 100 | Plus |
CG12674-PB | 313 | CG12674-PB | 1..313 | 1..314 | 1655 | 99.7 | Plus |
IP09436.pep Sequence
Translation from 79 to 1023
> IP09436.pep
MASGFVNNKRKRDEAHNQFICPIVYTNELPTYPKDCKFLPCGQNIQEYCK
EPVSIPKLDTCFSLNFKGLHELFSVNLMDQSAYDKLSENVQPMNPREADL
LKDIRALDWDFARLEPSRAQECAKMFAKERVHPPLPGLQRSVAVPKAPKD
LQPVSLEQQKAMIDASFKDIGKPLYRHPTNPGSNAYPVQVLPVFPDTDLQ
KYSFVQMSFDNPPQNSNQGLIRDCGSCLINFSFVQDIADSTEKVYVSDHR
YREEKADDSLERGEGYILREENDAIFYVGVDKYIKLRRERPRPHVSANKF
LLKVQRVGMNTTTD*
IP09436.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:57:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF14600-PA | 947 | GF14600-PA | 1..314 | 1..305 | 804 | 50 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:57:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG24828-PA | 312 | GG24828-PA | 1..312 | 1..312 | 1114 | 68.8 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:57:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH25215-PA | 306 | GH25215-PA | 86..251 | 19..215 | 208 | 32 | Plus |
Dgri\GH10872-PA | 309 | GH10872-PA | 86..251 | 19..215 | 206 | 32 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12674-PA | 314 | CG12674-PA | 1..314 | 1..314 | 1672 | 100 | Plus |
CG12674-PB | 313 | CG12674-PB | 1..313 | 1..314 | 1655 | 99.7 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:57:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI17275-PA | 326 | GI17275-PA | 8..318 | 7..306 | 446 | 35.1 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:57:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM16852-PA | 310 | GM16852-PA | 1..310 | 1..310 | 1419 | 85.8 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:57:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD23131-PA | 310 | GD23131-PA | 1..310 | 1..310 | 1424 | 85.2 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:57:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ17433-PA | 355 | GJ17433-PA | 1..323 | 1..306 | 654 | 43.2 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:57:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK15046-PA | 331 | GK15046-PA | 5..313 | 10..307 | 699 | 48.7 | Plus |
Dwil\GK23723-PA | 115 | GK23723-PA | 20..108 | 19..107 | 185 | 41.6 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:57:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE17932-PA | 311 | GE17932-PA | 1..310 | 1..311 | 1103 | 69 | Plus |