Clone IP09440 Report

Search the DGRC for IP09440

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:94
Well:40
Vector:pOT2
Associated Gene/TranscriptCG12928-RB
Protein status:IP09440.pep:
Preliminary Size:837
Sequenced Size:778

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12928 2008-04-29 Release 5.5 accounting
CG12928 2008-08-15 Release 5.9 accounting
CG12928 2008-12-18 5.12 accounting

Clone Sequence Records

IP09440.complete Sequence

778 bp (778 high quality bases) assembled on 2005-06-08

GenBank Submission: BT023582

> IP09440.complete
CAAACTTGAATCCAATCAATGAGGAGGCACAGAACCCGCAGAAACTGCAT
TCAGATCATATGGATTTCAGTGCCGGGCACTTCAAGAGGAGAACCAGATA
GTAATCCGATGCCTAGATGAGCAGAACAACAGCAGGGAAGCAATCTTGCC
CAGGCGGGCCGTAAAACAGTTGTTGCCGGTCGCTGATTCAGATGATATGA
CCATTCTACTTCGTACTCCCAGAGCGGTGGAGCTTTGGAAGTGGAGTAAT
GGCAATTACTCTCTATCAAGCAGGCTGATAGATGGGCAGGTGGAGCAAAT
GGCTCTTAGTCAAGGAGGTGCTGGCATAGAGAGCGGATATGTGGCGCTGA
TGGCTTCATCGCCAGCAGCAGAGATTCGGATTTACAGCTTCGGCAGCCCA
GACACGAGCAGCTTCCAACTGGACCAAGTCCTGGAGCTCGAGGACTCCCA
ACAGTCGCGGGTAATGCGCTTTATGCACCTGCCCGAGTCCGACGATCTAC
TGCTCTGTGTGTCCAACGTACTGCCGCAGCAACCGCTTCGCATCTACCAG
CACCGCGGAGCAGCGGGATTCCAGCAAATCCTCGGCGACAGCGCCTTGCC
AAAGGCTCATGCCCTGGAGGTGCTCTATCTGCCCAGCCATAAGCTGCGAC
TGCTGTCCATGGCCACGGAGGAGTCGGTCTACTTGCTGCAGCCACAGTTT
ACTACACTTTAAGTCACTTGTTTTGTTTGTTTTTTCTAAATAAAAATTAC
TTTTTATTAACAAAAAAAAAAAAAAAAA

IP09440.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG42600-RC 5411 CG42600-RC 4646..5407 1..761 3770 99.8 Plus
RpL31-RA 668 RpL31-RA 621..668 761..714 240 100 Minus
RpL31-RB 530 RpL31-RB 487..530 761..718 220 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5475452..5475832 761..381 1890 99.7 Minus
chr2R 21145070 chr2R 5475886..5476273 387..1 1890 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:58:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9587957..9588337 761..381 1890 99.7 Minus
2R 25286936 2R 9588391..9588778 387..1 1890 99.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9589590..9589977 387..1 1900 99.7 Minus
2R 25260384 2R 9589156..9589536 761..381 1890 99.7 Minus
Blast to na_te.dros performed on 2019-03-15 17:09:32 has no hits.

IP09440.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:10:12 Download gff for IP09440.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5475452..5475825 388..761 100 <- Minus
chr2R 5475886..5476273 1..387 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:39:52 Download gff for IP09440.complete
Subject Subject Range Query Range Percent Splice Strand
CG12928-RB 1..516 197..712 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:45:49 Download gff for IP09440.complete
Subject Subject Range Query Range Percent Splice Strand
clos-RD 4799..5511 1..712 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:28:11 Download gff for IP09440.complete
Subject Subject Range Query Range Percent Splice Strand
clos-RD 4799..5511 1..712 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:26:46 Download gff for IP09440.complete
Subject Subject Range Query Range Percent Splice Strand
CG12928-RB 1..516 197..712 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:27:45 Download gff for IP09440.complete
Subject Subject Range Query Range Percent Splice Strand
clos-RD 4799..5511 1..712 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:54:40 Download gff for IP09440.complete
Subject Subject Range Query Range Percent Splice Strand
CG12928-RB 28..789 1..761 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:45:49 Download gff for IP09440.complete
Subject Subject Range Query Range Percent Splice Strand
clos-RD 4856..5617 1..761 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:28:11 Download gff for IP09440.complete
Subject Subject Range Query Range Percent Splice Strand
clos-RD 4856..5617 1..761 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:26:49 Download gff for IP09440.complete
Subject Subject Range Query Range Percent Splice Strand
CG12928-RB 28..789 1..761 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:27:45 Download gff for IP09440.complete
Subject Subject Range Query Range Percent Splice Strand
clos-RD 4856..5617 1..761 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:10:12 Download gff for IP09440.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9587957..9588330 388..761 100 <- Minus
2R 9588391..9588778 1..387 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:10:12 Download gff for IP09440.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9587957..9588330 388..761 100 <- Minus
2R 9588391..9588778 1..387 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:10:12 Download gff for IP09440.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9587957..9588330 388..761 100 <- Minus
2R 9588391..9588778 1..387 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:28:11 Download gff for IP09440.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5475462..5475835 388..761 100 <- Minus
arm_2R 5475896..5476283 1..387 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:59:49 Download gff for IP09440.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9589156..9589529 388..761 100 <- Minus
2R 9589590..9589977 1..387 99   Minus

IP09440.hyp Sequence

Translation from 2 to 711

> IP09440.hyp
NLNPINEEAQNPQKLQFRSYGFQCRALQEENQIVIRCLDEQNNSREAILP
RRAVKQLLPVADSDDMTILLRTPRAVELWKWSNGNYSLSSRLIDGQVEQM
ALSQGGAGIESGYVALMASSPAAEIRIYSFGSPDTSSFQLDQVLELEDSQ
QSRVMRFMHLPESDDLLLCVSNVLPQQPLRIYQHRGAAGFQQILGDSALP
KAHALEVLYLPSHKLRLLSMATEESVYLLQPQFTTL*

IP09440.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
clos-PD 1836 CG42600-PD 1601..1836 1..236 1197 100 Plus

IP09440.pep Sequence

Translation from 196 to 711

> IP09440.pep
MTILLRTPRAVELWKWSNGNYSLSSRLIDGQVEQMALSQGGAGIESGYVA
LMASSPAAEIRIYSFGSPDTSSFQLDQVLELEDSQQSRVMRFMHLPESDD
LLLCVSNVLPQQPLRIYQHRGAAGFQQILGDSALPKAHALEVLYLPSHKL
RLLSMATEESVYLLQPQFTTL*

IP09440.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12493-PA 170 GF12493-PA 1..170 1..171 504 58.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:36:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25275-PA 197 GG25275-PA 27..197 1..171 771 86.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:36:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22860-PA 120 GH22860-PA 1..120 52..171 287 46.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
clos-PD 1836 CG42600-PD 1666..1836 1..171 862 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21239-PA 266 GI21239-PA 100..266 5..171 317 43 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17334-PA 251 GL17334-PA 82..251 3..171 542 64.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30458-PA 1851 GA30458-PA 1682..1851 3..171 536 63.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20593-PA 278 GM20593-PA 108..278 1..171 795 89.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10066-PA 279 GD10066-PA 108..279 1..171 812 91.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20843-PA 220 GJ20843-PA 56..220 5..171 294 42.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22203-PA 171 GE22203-PA 1..171 1..171 787 87.7 Plus