Clone IP09446 Report

Search the DGRC for IP09446

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:94
Well:46
Vector:pOT2
Associated Gene/Transcriptlft-RA
Protein status:IP09446.pep: gold
Preliminary Size:807
Sequenced Size:1207

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13139 2008-04-29 Release 5.5 accounting
CG13139 2008-08-15 Release 5.9 accounting
CG13139 2008-12-18 5.12 accounting

Clone Sequence Records

IP09446.complete Sequence

1207 bp (1207 high quality bases) assembled on 2006-01-26

GenBank Submission: BT024350

> IP09446.complete
AACAATATGAGTGTATAAAACGAAATCCACTGAATGATATGCGGTTTTAT
TTGTGCTGAAAACGAAACCCGAAACCATTCTTTGTTCAACACAATATTGA
ATAATCTTAAAAATGGTCTATCCCGAAGAACCTTTTTGGGTTTTACCAAC
CGTAACTGGATTTTACGAGGATAGAGATTATAGAGTAAATGTCGTTGAAG
CCCTACAAGAGTTTTGGCAAATGAAGCAGTCTCGTGGAGCTGAATTGAAA
AATGGAGCTCTTGTGATTTACGAATCGATTCCGTCTAATAGCCAGCCATA
CATTTGCTTCGTAACACTTCCTGGAGGAAGCTGCTTTGGAAGTTTTCAAA
ACTGTCCCACCAAGGCAGAGGCTCGTCGCAGTTCGGCCAAGATCGCCCTA
ATGAATTCCGTCTTTAATGAGCATCCATCGCGTCGAATCAGCGATGAGTT
CATTCAAAAGGCGGTTCAGGATGCTCGCACTTCCTTCAAGGGCACATCGC
AAATCAACGAGGGCACAGAATCGGGCATCGGAGCATTCAGATTCATGCTG
GAGGCGAACAAGGGAAGAACCATGCTGGAGTTCCAGGAGCTTATGACCGT
GTTCCAACTGCTTCACTGGAACGGATCGCTGAAAGCAATGCGCGAACGCC
ACTGCTCCAGGCAGGAAGTGGTGGCTCATTATTCGAACCGGAGCCTGGAC
GACGAGATGCGATCGCAGATGGCATTGGATTGGATTGCCAGGGAGCACGA
TAATCCAGGCGTTATTCGCAGGGAGTTGGTGCTCGCCGAGAGGGAGCTGG
AGACCTTTCGCATGGCTGGGCGTGAATTGCGCTTTCCGAAGGAGAAGAAG
GATATCCTTATGATAGCACATAATCAGCTGGGCGGCAGTGCCCTTAACTC
GGCTACCATTGATGATTAATTGGAAAAATTAATAAGCACGATCGAAATTA
ACCCTTTTTTTAGATAAATCGTATAATTTCAACTTTAACGACGATCAATA
TTTATTTAATTGGCATACCATATGATCTCCATGATGAAAAACAAGCGGAA
ATTATTACACTTCCCACAAACTCTTCCAAATTATGAAAATTAATTTAAAA
ATCTTTGAAAATGTGATTTTTAAAACAGCTGCTACACAAATAAGACTAAA
TCCAATAAAATAAATATAATATTTTAACTTAAAAAAAAAAAAAAAAAAAA
AAAAAAA

IP09446.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG13139.f 1223 CG13139.f 44..1223 1..1180 5885 99.9 Plus
CG13139.b 1223 CG13139.b 68..1223 25..1180 5765 99.9 Plus
CG13139.c 1311 CG13139.c 315..1311 184..1180 4970 99.8 Plus
CG13139.c 1311 CG13139.c 134..293 27..186 800 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10364627..10365268 539..1180 3180 99.7 Plus
chr2L 23010047 chr2L 10364348..10364538 350..540 940 99.5 Plus
chr2L 23010047 chr2L 10364121..10364286 184..349 830 100 Plus
chr2L 23010047 chr2L 10363895..10364053 27..185 795 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:58:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10365769..10366414 539..1184 3215 99.8 Plus
2L 23513712 2L 10365490..10365680 350..540 955 100 Plus
2L 23513712 2L 10365263..10365428 184..349 830 100 Plus
2L 23513712 2L 10365032..10365190 27..185 795 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10365769..10366414 539..1184 3215 99.8 Plus
2L 23513712 2L 10365490..10365680 350..540 955 100 Plus
2L 23513712 2L 10365263..10365428 184..349 830 100 Plus
2L 23513712 2L 10365032..10365190 27..185 795 100 Plus
Blast to na_te.dros performed 2019-03-16 07:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 668..805 1037..1177 129 59.4 Plus

IP09446.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:07:41 Download gff for IP09446.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10363420..10363445 1..26 100 -> Plus
chr2L 10363895..10364053 27..185 100 -> Plus
chr2L 10364123..10364286 186..349 100 -> Plus
chr2L 10364348..10364538 350..540 99 -> Plus
chr2L 10364629..10365237 541..1149 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:39:55 Download gff for IP09446.complete
Subject Subject Range Query Range Percent Splice Strand
CG13139-RA 1..807 113..919 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:33:27 Download gff for IP09446.complete
Subject Subject Range Query Range Percent Splice Strand
lft-RB 1..807 113..919 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:29:54 Download gff for IP09446.complete
Subject Subject Range Query Range Percent Splice Strand
lft-RA 1..807 113..919 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:07:36 Download gff for IP09446.complete
Subject Subject Range Query Range Percent Splice Strand
CG13139-RA 1..807 113..919 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:28:32 Download gff for IP09446.complete
Subject Subject Range Query Range Percent Splice Strand
lft-RA 1..807 113..919 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:04:52 Download gff for IP09446.complete
Subject Subject Range Query Range Percent Splice Strand
CG13139-RA 1..807 113..919 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:33:27 Download gff for IP09446.complete
Subject Subject Range Query Range Percent Splice Strand
lft-RA 1..1180 1..1180 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:54 Download gff for IP09446.complete
Subject Subject Range Query Range Percent Splice Strand
lft-RA 87..1266 1..1180 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:07:37 Download gff for IP09446.complete
Subject Subject Range Query Range Percent Splice Strand
CG13139-RA 1..807 113..919 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:28:32 Download gff for IP09446.complete
Subject Subject Range Query Range Percent Splice Strand
lft-RA 87..1266 1..1180 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:07:41 Download gff for IP09446.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10365032..10365190 27..185 100 -> Plus
2L 10365265..10365428 186..349 100 -> Plus
2L 10365490..10365680 350..540 100 -> Plus
2L 10364557..10364582 1..26 100 -> Plus
2L 10365771..10366410 541..1180 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:07:41 Download gff for IP09446.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10365032..10365190 27..185 100 -> Plus
2L 10365265..10365428 186..349 100 -> Plus
2L 10365490..10365680 350..540 100 -> Plus
2L 10364557..10364582 1..26 100 -> Plus
2L 10365771..10366410 541..1180 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:07:41 Download gff for IP09446.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10365032..10365190 27..185 100 -> Plus
2L 10365265..10365428 186..349 100 -> Plus
2L 10365490..10365680 350..540 100 -> Plus
2L 10364557..10364582 1..26 100 -> Plus
2L 10365771..10366410 541..1180 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:54 Download gff for IP09446.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10364557..10364582 1..26 100 -> Plus
arm_2L 10365032..10365190 27..185 100 -> Plus
arm_2L 10365265..10365428 186..349 100 -> Plus
arm_2L 10365490..10365680 350..540 100 -> Plus
arm_2L 10365771..10366410 541..1180 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:57:54 Download gff for IP09446.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10364557..10364582 1..26 100 -> Plus
2L 10365032..10365190 27..185 100 -> Plus
2L 10365265..10365428 186..349 100 -> Plus
2L 10365490..10365680 350..540 100 -> Plus
2L 10365771..10366410 541..1180 99   Plus

IP09446.pep Sequence

Translation from 112 to 918

> IP09446.pep
MVYPEEPFWVLPTVTGFYEDRDYRVNVVEALQEFWQMKQSRGAELKNGAL
VIYESIPSNSQPYICFVTLPGGSCFGSFQNCPTKAEARRSSAKIALMNSV
FNEHPSRRISDEFIQKAVQDARTSFKGTSQINEGTESGIGAFRFMLEANK
GRTMLEFQELMTVFQLLHWNGSLKAMRERHCSRQEVVAHYSNRSLDDEMR
SQMALDWIAREHDNPGVIRRELVLAERELETFRMAGRELRFPKEKKDILM
IAHNQLGGSALNSATIDD*

IP09446.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15773-PA 268 GF15773-PA 1..268 1..268 1427 98.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10116-PA 268 GG10116-PA 1..268 1..268 1446 99.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13606-PA 268 GH13606-PA 1..268 1..268 1318 90.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
lft-PB 268 CG13139-PB 1..268 1..268 1395 100 Plus
lft-PA 268 CG13139-PA 1..268 1..268 1395 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20400-PA 218 GI20400-PA 1..204 1..204 975 88.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19005-PA 269 GL19005-PA 1..267 1..267 1291 94 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18247-PA 268 GM18247-PA 1..268 1..268 1446 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23685-PA 268 GD23685-PA 1..268 1..268 1446 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13753-PA 268 GJ13753-PA 1..268 1..268 1324 90.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14872-PA 266 GK14872-PA 1..266 1..268 1295 89.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18930-PA 268 GE18930-PA 1..268 1..268 1442 98.9 Plus

IP09446.hyp Sequence

Translation from 112 to 918

> IP09446.hyp
MVYPEEPFWVLPTVTGFYEDRDYRVNVVEALQEFWQMKQSRGAELKNGAL
VIYESIPSNSQPYICFVTLPGGSCFGSFQNCPTKAEARRSSAKIALMNSV
FNEHPSRRISDEFIQKAVQDARTSFKGTSQINEGTESGIGAFRFMLEANK
GRTMLEFQELMTVFQLLHWNGSLKAMRERHCSRQEVVAHYSNRSLDDEMR
SQMALDWIAREHDNPGVIRRELVLAERELETFRMAGRELRFPKEKKDILM
IAHNQLGGSALNSATIDD*

IP09446.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:03:57
Subject Length Description Subject Range Query Range Score Percent Strand
lft-PB 268 CG13139-PB 1..268 1..268 1395 100 Plus
lft-PA 268 CG13139-PA 1..268 1..268 1395 100 Plus