Clone IP09550 Report

Search the DGRC for IP09550

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:95
Well:50
Vector:pOT2
Associated Gene/TranscriptOSCP1-RA
Protein status:IP09550.pep: gold
Preliminary Size:909
Sequenced Size:1188

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13178 2008-04-29 Release 5.5 accounting
CG13178 2008-08-15 Release 5.9 accounting
CG13178 2008-12-18 5.12 accounting

Clone Sequence Records

IP09550.complete Sequence

1188 bp (1188 high quality bases) assembled on 2006-01-20

GenBank Submission: BT024346

> IP09550.complete
TGCCATCGAGTAGCCCGTCAAACGATGGCCAACTTTAGTCCACGCCAGCT
GTAGAATCCCCGGGCCAATGTCTTCATCCTGGTCAATCTCGGTTGCGAGA
TGCTCTACGTGATCGATCAGCGGCTGAAGGCGCAGCAGATTGCTCAGGAC
AAATCGGTCCAGGTTATCCACGATGTGACTTCTGTGCTGCTCGAACCAAA
GTTTATAGACTCGCTCCTAAACGGATCGAAACACAATAGTGCGCAGCTTT
TGACCGCCGAGCATTGCAAGTTTATGCTGAACGACATTGCCACCTGCTCC
TTGATGCGACTCGACGAGCAGTCGATGTCCAAGCTGTGGAATCTGATGAC
TATGGTCTACAAGTGGCAGCTTTTCGTTTCCCGCCATCAGCACCATCTGC
TGGAGATTACATTTCGGCACTTGGAGGCGATCAACAGGTTGTATCCGGAT
GCCAAACGGCATATGCTGATTGACTTCACGAAAAACACGCTGCTGGACTT
TTGGAATGCCAGCGGTGAGGATGCGCAGCTGTCCATCTACCAGACGAATC
GGGCCTGGCTGCAGTGCTTTAACACAAAGATATCGCTTTTGATTCGCATG
GGCTTTCAGGCCATGGACGGTAGTTTCATCAGGGACGTGGATCAAGATTA
CTACGCGGAATACGTTGAGTCAGCCGGCGATAATATCTATGCGAAGAGTG
CCGACCAGCGGGAGCGCCAACAACGGGAGCCCAACAGCATGGATCAGCTG
GCCGCTCAGCTGAACATAAATCCGGCGCAAAGTGAGGATCTGCAGCCCAT
CAACGCCCGCCAGTTCCAGCAGCAGTTCGAGCAGGCCTTCGGCAATGTGC
TTTTCAATGACACAGCGGCCAGCTCCTCTGGCTGCGAGTTTGTACAGCTG
CAGCCCACGACATCGGCATCGTCCTCGGAAAAGGTGGCGACGTCCATGTC
CCGGGGAGGATCCTTGCTGAACCAGAACCTGCTGGACCTGTACAGCAAAA
TGCCTTGAGGCCAAAGTCACTTCGTTTTGAAAATATTTTATTTCTGCTTC
AGTTGGTTTTTGTAAAATAATTATAAAAACGACGTAGGTTGCATAATAAT
CCTTTGTTTGTTTGTTTTCATCGAAGACATTGTTGTGATCAAAAAATAAA
TAAACTTTAGAATTTTGAAAAAAAAAAAAAAAAAAAAA

IP09550.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG13178-RA 1175 CG13178-RA 9..1175 1..1167 5835 100 Plus
CG8378-RA 2739 CG8378-RA 2597..2739 1169..1027 715 100 Minus
CG8378.a 2467 CG8378.a 2383..2467 1169..1085 425 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8030394..8031398 1167..163 5010 99.9 Minus
chr2R 21145070 chr2R 8031574..8031736 163..1 800 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:58:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12143189..12144195 1169..163 5035 100 Minus
2R 25286936 2R 12144371..12144533 163..1 815 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12144388..12145394 1169..163 5035 100 Minus
2R 25260384 2R 12145570..12145732 163..1 815 100 Minus
Blast to na_te.dros performed 2019-03-16 17:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
Juan 4236 Juan JUAN 4236bp 400..477 1076..996 146 66.7 Minus
Tc1 1666 Tc1 TC1 1666bp 1269..1321 483..533 115 73.6 Plus

IP09550.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:33:32 Download gff for IP09550.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8030394..8031397 164..1167 99 <- Minus
chr2R 8031574..8031736 1..163 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:40:45 Download gff for IP09550.complete
Subject Subject Range Query Range Percent Splice Strand
CG13178-RA 1..909 100..1008 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:37:49 Download gff for IP09550.complete
Subject Subject Range Query Range Percent Splice Strand
CG13178-RA 1..909 100..1008 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:57:13 Download gff for IP09550.complete
Subject Subject Range Query Range Percent Splice Strand
CG13178-RA 1..909 100..1008 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:12:47 Download gff for IP09550.complete
Subject Subject Range Query Range Percent Splice Strand
CG13178-RA 1..909 100..1008 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:00:45 Download gff for IP09550.complete
Subject Subject Range Query Range Percent Splice Strand
OSCP1-RA 1..909 100..1008 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:09:39 Download gff for IP09550.complete
Subject Subject Range Query Range Percent Splice Strand
CG13178-RA 1..909 100..1008 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:37:48 Download gff for IP09550.complete
Subject Subject Range Query Range Percent Splice Strand
CG13178-RA 1..1167 1..1167 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:57:13 Download gff for IP09550.complete
Subject Subject Range Query Range Percent Splice Strand
CG13178-RA 1..1167 1..1167 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:12:47 Download gff for IP09550.complete
Subject Subject Range Query Range Percent Splice Strand
CG13178-RA 1..909 100..1008 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:00:45 Download gff for IP09550.complete
Subject Subject Range Query Range Percent Splice Strand
OSCP1-RA 20..1186 1..1167 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:33:32 Download gff for IP09550.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12143191..12144194 164..1167 100 <- Minus
2R 12144371..12144533 1..163 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:33:32 Download gff for IP09550.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12143191..12144194 164..1167 100 <- Minus
2R 12144371..12144533 1..163 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:33:32 Download gff for IP09550.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12143191..12144194 164..1167 100 <- Minus
2R 12144371..12144533 1..163 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:57:13 Download gff for IP09550.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8030696..8031699 164..1167 100 <- Minus
arm_2R 8031876..8032038 1..163 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:00:55 Download gff for IP09550.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12144390..12145393 164..1167 100 <- Minus
2R 12145570..12145732 1..163 100   Minus

IP09550.pep Sequence

Translation from 99 to 1007

> IP09550.pep
MLYVIDQRLKAQQIAQDKSVQVIHDVTSVLLEPKFIDSLLNGSKHNSAQL
LTAEHCKFMLNDIATCSLMRLDEQSMSKLWNLMTMVYKWQLFVSRHQHHL
LEITFRHLEAINRLYPDAKRHMLIDFTKNTLLDFWNASGEDAQLSIYQTN
RAWLQCFNTKISLLIRMGFQAMDGSFIRDVDQDYYAEYVESAGDNIYAKS
ADQRERQQREPNSMDQLAAQLNINPAQSEDLQPINARQFQQQFEQAFGNV
LFNDTAASSSGCEFVQLQPTTSASSSEKVATSMSRGGSLLNQNLLDLYSK
MP*

IP09550.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12643-PA 323 GF12643-PA 26..322 1..301 1308 84.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22607-PA 325 GG22607-PA 26..325 1..302 1559 95.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21040-PA 349 GH21040-PA 26..348 2..301 1014 62.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
OSCP1-PA 302 CG13178-PA 1..302 1..302 1553 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18643-PA 340 GI18643-PA 24..339 2..301 1164 69.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17481-PA 327 GL17481-PA 28..326 1..301 1278 77.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12098-PA 327 GA12098-PA 28..326 1..301 1273 77.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20385-PA 327 GM20385-PA 26..327 1..302 1605 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25858-PA 148 GD25858-PA 33..148 187..302 595 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21657-PA 341 GJ21657-PA 24..341 2..302 1165 71.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19493-PA 317 GK19493-PA 1..317 1..302 1171 70.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13475-PA 325 GE13475-PA 26..325 1..302 1555 95.7 Plus

IP09550.hyp Sequence

Translation from 99 to 1007

> IP09550.hyp
MLYVIDQRLKAQQIAQDKSVQVIHDVTSVLLEPKFIDSLLNGSKHNSAQL
LTAEHCKFMLNDIATCSLMRLDEQSMSKLWNLMTMVYKWQLFVSRHQHHL
LEITFRHLEAINRLYPDAKRHMLIDFTKNTLLDFWNASGEDAQLSIYQTN
RAWLQCFNTKISLLIRMGFQAMDGSFIRDVDQDYYAEYVESAGDNIYAKS
ADQRERQQREPNSMDQLAAQLNINPAQSEDLQPINARQFQQQFEQAFGNV
LFNDTAASSSGCEFVQLQPTTSASSSEKVATSMSRGGSLLNQNLLDLYSK
MP*

IP09550.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
OSCP1-PA 302 CG13178-PA 1..302 1..302 1553 100 Plus