Clone IP09562 Report

Search the DGRC for IP09562

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:95
Well:62
Vector:pOT2
Associated Gene/TranscriptCG13670-RA
Protein status:IP09562.pep: gold
Preliminary Size:801
Sequenced Size:979

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13670 2008-04-29 Release 5.5 accounting
CG13670 2008-08-15 Release 5.9 accounting
CG13670 2008-12-18 5.12 accounting

Clone Sequence Records

IP09562.complete Sequence

979 bp (979 high quality bases) assembled on 2006-01-20

GenBank Submission: BT024343

> IP09562.complete
CGAGAATCGGGCGATCGAAGGGTTTCAATCATAAGTTATAGATAAGTAGC
CAGCGGTTAATAAAAAGAGAGATATGAAGAAGCGACGCATAACCAGCACA
GCTGGAGATGCCAATGGACCTGGCGTTGGACCAAAAGCACGGACTTCAAC
TCGCTGGCGCTTCCGCATTGCGTTGCGAAGAGAGGCACGCTTCGGCCAGG
CGGTGCGGCAACTCAAAGATTTGTTGCCACTGTTGGCGCTAATTGCTGGA
TGCGGAATGATCGGTGCATGCGCAGCGGTTGGCTACTCCTATGCAAGATT
CGAGGGTCCGGTGGTGGGGCCGGAGCATCTGGTCACCGTCCACGACGGAC
GCACCGTGGACTATGTGGCCCGTCCCGAGTACAGCTTCGCCTATGGAGTC
GAGGATGGCAAGACGCGCGTGCTGCAGAATCGCAAGGAGACGCGCAACGG
GGACGAGGTGAGAGGAGTGTACAGCGTAGTCGATCCGGATGGCACCTTGC
GTGTGGTTAAATACACGGCCGACGATGCCAACGGCTTCCAAGCCGAGGTC
ATTACCAATGGTGTGAAAACTCTGCACGGCCACGGTTCCGACGGGGATGC
GGGTGGCGGGTCGGTGGACAGCCAGGTGAGGCACCATAGCGCCGAGGCCC
ACAAAGCGAAGGAGGATGATGAGGAGGAGGATGAACGGGAGCGGGAGCAC
CAGGGGAATGGCCAGTACCAAGTGCACGAGGATTACGATGAGGGAAAGGA
CGAGCAGGCGGAGGAGGACGAGGAGGGTGGCGGTCACCAGGAGTACGAGG
GCAGCAGCGAGGAAGGATATGTCGAGGCAGATGCTCACAGTCAGCAGGAG
GAGTCCAGTGACGAGGACTACTAGATTTGAAGAAAAACCTATTAATTATA
TTTCATTTATTGTGATAAATTAAAATATATATCATATAAGCAGTGTTCAC
TGCTCAAACCAAAAAAAAAAAAAAAAAAA

IP09562.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13670.a 2610 CG13670.a 435..1397 1..963 4815 100 Plus
CG13670-RA 1022 CG13670-RA 60..1022 1..963 4815 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8313826..8314314 472..960 2445 100 Plus
chr3L 24539361 chr3L 8312796..8313269 1..474 2355 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:58:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8321792..8322283 472..963 2460 100 Plus
3L 28110227 3L 8320763..8321236 1..474 2370 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:13:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8314892..8315383 472..963 2460 100 Plus
3L 28103327 3L 8313863..8314336 1..474 2370 100 Plus
Blast to na_te.dros performed on 2019-03-16 23:38:24 has no hits.

IP09562.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:39:11 Download gff for IP09562.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8312796..8313269 1..474 99 -> Plus
chr3L 8313829..8314011 475..657 100 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:40:47 Download gff for IP09562.complete
Subject Subject Range Query Range Percent Splice Strand
CG13670-RA 1..801 74..874 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:37:50 Download gff for IP09562.complete
Subject Subject Range Query Range Percent Splice Strand
CG13670-RA 1..801 74..874 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:46:03 Download gff for IP09562.complete
Subject Subject Range Query Range Percent Splice Strand
CG13670-RA 1..801 74..874 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:12:49 Download gff for IP09562.complete
Subject Subject Range Query Range Percent Splice Strand
CG13670-RA 1..801 74..874 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:53:40 Download gff for IP09562.complete
Subject Subject Range Query Range Percent Splice Strand
CG13670-RA 1..801 74..874 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:09:41 Download gff for IP09562.complete
Subject Subject Range Query Range Percent Splice Strand
CG13670-RA 1..960 1..960 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:37:50 Download gff for IP09562.complete
Subject Subject Range Query Range Percent Splice Strand
CG13670-RA 1..960 1..960 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:03 Download gff for IP09562.complete
Subject Subject Range Query Range Percent Splice Strand
CG13670-RA 1..960 1..960 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:12:49 Download gff for IP09562.complete
Subject Subject Range Query Range Percent Splice Strand
CG13670-RA 1..960 1..960 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:53:40 Download gff for IP09562.complete
Subject Subject Range Query Range Percent Splice Strand
CG13670-RA 1..960 1..960 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:39:11 Download gff for IP09562.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8320763..8321236 1..474 100 -> Plus
3L 8321795..8322280 475..960 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:39:11 Download gff for IP09562.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8320763..8321236 1..474 100 -> Plus
3L 8321795..8322280 475..960 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:39:11 Download gff for IP09562.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8320763..8321236 1..474 100 -> Plus
3L 8321795..8322280 475..960 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:03 Download gff for IP09562.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8313863..8314336 1..474 100 -> Plus
arm_3L 8314895..8315380 475..960 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:00:56 Download gff for IP09562.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8313863..8314336 1..474 100 -> Plus
3L 8314895..8315380 475..960 100   Plus

IP09562.pep Sequence

Translation from 73 to 873

> IP09562.pep
MKKRRITSTAGDANGPGVGPKARTSTRWRFRIALRREARFGQAVRQLKDL
LPLLALIAGCGMIGACAAVGYSYARFEGPVVGPEHLVTVHDGRTVDYVAR
PEYSFAYGVEDGKTRVLQNRKETRNGDEVRGVYSVVDPDGTLRVVKYTAD
DANGFQAEVITNGVKTLHGHGSDGDAGGGSVDSQVRHHSAEAHKAKEDDE
EEDEREREHQGNGQYQVHEDYDEGKDEQAEEDEEGGGHQEYEGSSEEGYV
EADAHSQQEESSDEDY*

IP09562.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10285-PA 281 GF10285-PA 1..281 1..266 715 68.8 Plus
Dana\GF10288-PA 157 GF10288-PA 64..140 83..159 198 50.6 Plus
Dana\GF24957-PA 189 GF24957-PA 18..187 86..248 188 31.4 Plus
Dana\GF24956-PA 188 GF24956-PA 49..117 95..163 185 50.7 Plus
Dana\GF18457-PA 246 GF18457-PA 36..124 70..159 184 48.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14300-PA 262 GG14300-PA 1..262 1..266 901 78.3 Plus
Dere\GG14302-PA 162 GG14302-PA 81..145 95..159 190 55.4 Plus
Dere\GG14555-PA 180 GG14555-PA 46..114 95..163 184 50.7 Plus
Dere\GG15930-PA 245 GG15930-PA 40..120 73..159 183 47.1 Plus
Dere\GG14556-PA 228 GG14556-PA 24..100 92..169 181 47.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15051-PA 267 GH15051-PA 24..263 53..265 504 58.5 Plus
Dgri\GH15054-PA 167 GH15054-PA 80..144 95..159 191 55.4 Plus
Dgri\GH15042-PA 191 GH15042-PA 24..100 92..169 184 48.7 Plus
Dgri\GH15041-PA 182 GH15041-PA 48..112 95..159 182 52.3 Plus
Dgri\GH22387-PA 235 GH22387-PA 66..124 101..159 180 59.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13670-PA 266 CG13670-PA 1..266 1..266 1405 100 Plus
Cpr62Bb-PC 194 CG13935-PC 24..181 92..243 199 31.4 Plus
Cpr62Bb-PB 194 CG13935-PB 24..181 92..243 199 31.4 Plus
Cpr62Bb-PA 194 CG13935-PA 24..181 92..243 199 31.4 Plus
Cpr92A-PA 245 CG6240-PA 40..124 73..159 194 49.4 Plus
Cpr62Bc-PB 180 CG1919-PB 41..119 90..168 192 46.8 Plus
Cpr62Bc-PA 180 CG1919-PA 41..119 90..168 192 46.8 Plus
Cpr66Cb-PA 162 CG7076-PA 81..145 95..159 189 55.4 Plus
Cpr35B-PA 218 CG3474-PA 59..207 90..257 186 30.8 Plus
Crys-PB 477 CG16963-PB 70..133 96..159 185 54.7 Plus
Crys-PA 477 CG16963-PA 70..133 96..159 185 54.7 Plus
CG34461-PB 138 CG34461-PB 47..137 98..188 182 41.8 Plus
CG34461-PA 138 CG34461-PA 47..137 98..188 182 41.8 Plus
Cpr64Aa-PA 192 CG15006-PA 54..120 97..163 177 47.8 Plus
Cpr76Bb-PA 198 CG9290-PA 84..169 101..179 172 46.5 Plus
Cpr76Ba-PA 204 CG9283-PA 98..186 101..185 172 42.7 Plus
Cpr64Ad-PB 247 CG1259-PB 95..202 52..159 172 38.9 Plus
Cpr76Bc-PD 424 CG9295-PD 27..147 78..191 169 36.9 Plus
Cpr76Bc-PC 424 CG9295-PC 27..147 78..191 169 36.9 Plus
Cpr76Bd-PD 1228 CG9299-PD 1092..1212 59..162 169 38.8 Plus
Cpr76Bd-PB 1228 CG9299-PB 1092..1212 59..162 169 38.8 Plus
Cpr76Bd-PC 1231 CG9299-PC 1095..1215 59..162 169 38.8 Plus
Cpr64Ab-PA 120 CG15007-PA 40..98 101..159 168 55.9 Plus
Ccp84Aa-PA 205 CG2360-PA 55..118 96..159 163 50 Plus
Cpr66D-PA 270 CG32029-PA 158..215 103..160 163 55.2 Plus
Cpr31A-PA 340 CG33302-PA 125..191 93..159 162 49.3 Plus
Cpr30F-PA 146 CG31876-PA 12..101 63..159 160 39.2 Plus
Ccp84Ab-PA 221 CG1252-PA 55..118 96..159 160 50 Plus
Edg84A-PA 188 CG2345-PA 31..93 97..159 159 50.8 Plus
Ccp84Af-PA 151 CG1331-PA 40..118 81..159 158 41.8 Plus
Cpr64Ac-PA 188 CG15008-PA 51..153 56..164 158 37.6 Plus
Cpr23B-PA 302 CG2973-PA 157..213 103..159 157 54.4 Plus
Cpr5C-PA 145 CG4052-PA 57..120 96..159 154 48.4 Plus
Ccp84Ad-PA 199 CG2341-PA 55..118 96..159 154 46.9 Plus
Ccp84Ac-PA 217 CG1327-PA 46..130 84..168 153 38.8 Plus
Cpr30B-PA 153 CG3818-PA 33..89 103..159 144 47.4 Plus
Ccp84Ag-PA 191 CG2342-PA 35..98 96..159 144 45.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12818-PA 282 GI12818-PA 55..229 55..219 547 65.9 Plus
Dmoj\GI12820-PA 164 GI12820-PA 80..144 95..159 193 55.4 Plus
Dmoj\GI11676-PA 187 GI11676-PA 24..158 92..225 191 34.6 Plus
Dmoj\GI12933-PA 163 GI12933-PA 46..118 95..168 184 48.6 Plus
Dmoj\GI11675-PA 176 GI11675-PA 47..111 95..159 183 52.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24691-PA 254 GL24691-PA 1..193 1..219 648 65.6 Plus
Dper\GL24694-PA 159 GL24694-PA 73..142 90..159 195 52.9 Plus
Dper\GL15387-PA 536 GL15387-PA 62..136 87..162 190 48.7 Plus
Dper\GL24692-PA 133 GL24692-PA 44..114 98..168 187 50.7 Plus
Dper\GL24824-PA 195 GL24824-PA 24..100 92..169 183 47.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12448-PA 254 GA12448-PA 1..253 1..264 718 62 Plus
Dpse\GA20083-PA 159 GA20083-PA 73..142 90..159 195 52.9 Plus
Dpse\GA26062-PA 529 GA26062-PA 62..136 87..162 191 48.7 Plus
Dpse\GA15131-PA 183 GA15131-PA 45..117 95..168 188 48.6 Plus
Dpse\GA23954-PA 133 GA23954-PA 44..114 98..168 187 50.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25041-PA 263 GM25041-PA 1..263 1..266 1290 94.4 Plus
Dsec\GM13174-PA 73 GM13174-PA 1..72 62..133 380 100 Plus
Dsec\GM25044-PA 162 GM25044-PA 81..145 95..159 192 55.4 Plus
Dsec\GM26903-PA 245 GM26903-PA 40..124 73..159 187 49.4 Plus
Dsec\GM14163-PA 180 GM14163-PA 46..114 95..163 184 50.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14077-PA 263 GD14077-PA 1..263 1..266 1287 94.8 Plus
Dsim\GD14081-PA 162 GD14081-PA 81..145 95..159 192 55.4 Plus
Dsim\GD13434-PA 180 GD13434-PA 46..114 95..163 184 50.7 Plus
Dsim\GD14078-PA 177 GD14078-PA 86..176 98..188 180 40.7 Plus
Dsim\GD17606-PA 192 GD17606-PA 24..100 92..169 178 47.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12960-PA 289 GJ12960-PA 1..197 1..199 528 59.9 Plus
Dvir\GJ12963-PA 164 GJ12963-PA 80..144 95..159 191 55.4 Plus
Dvir\GJ12946-PA 185 GJ12946-PA 24..100 92..169 185 48.7 Plus
Dvir\GJ12945-PA 178 GJ12945-PA 46..110 95..159 182 52.3 Plus
Dvir\GJ12961-PA 135 GJ12961-PA 46..115 98..167 179 50 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11899-PA 270 GK11899-PA 1..270 1..266 687 63.5 Plus
Dwil\GK11921-PA 158 GK11921-PA 72..141 90..159 194 52.9 Plus
Dwil\GK20564-PA 195 GK20564-PA 24..100 92..169 190 50 Plus
Dwil\GK20563-PA 184 GK20563-PA 45..109 95..159 183 52.3 Plus
Dwil\GK13476-PA 245 GK13476-PA 72..130 101..159 180 59.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20728-PA 272 GE20728-PA 1..272 1..266 998 77.8 Plus
Dyak\GE20730-PA 162 GE20730-PA 81..145 95..159 192 55.4 Plus
Dyak\GE25123-PA 498 GE25123-PA 38..122 73..159 187 49.4 Plus
Dyak\GE25123-PA 498 GE25123-PA 293..377 73..159 187 49.4 Plus
Dyak\GE20909-PA 180 GE20909-PA 46..114 95..163 184 50.7 Plus
Dyak\GE20910-PA 229 GE20910-PA 24..100 92..169 181 47.4 Plus

IP09562.hyp Sequence

Translation from 73 to 873

> IP09562.hyp
MKKRRITSTAGDANGPGVGPKARTSTRWRFRIALRREARFGQAVRQLKDL
LPLLALIAGCGMIGACAAVGYSYARFEGPVVGPEHLVTVHDGRTVDYVAR
PEYSFAYGVEDGKTRVLQNRKETRNGDEVRGVYSVVDPDGTLRVVKYTAD
DANGFQAEVITNGVKTLHGHGSDGDAGGGSVDSQVRHHSAEAHKAKEDDE
EEDEREREHQGNGQYQVHEDYDEGKDEQAEEDEEGGGHQEYEGSSEEGYV
EADAHSQQEESSDEDY*

IP09562.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG13670-PA 266 CG13670-PA 1..266 1..266 1405 100 Plus
Cpr62Bb-PC 194 CG13935-PC 24..181 92..243 199 31.4 Plus
Cpr62Bb-PB 194 CG13935-PB 24..181 92..243 199 31.4 Plus
Cpr62Bb-PA 194 CG13935-PA 24..181 92..243 199 31.4 Plus
Cpr62Bc-PB 180 CG1919-PB 41..119 90..168 192 46.8 Plus