Clone IP09740 Report

Search the DGRC for IP09740

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:97
Well:40
Vector:pOT2
Associated Gene/TranscriptMst57Da-RA
Protein status:IP09740.pep: gold
Preliminary Size:891
Sequenced Size:306

Clone Sequence Records

IP09740.complete Sequence

306 bp assembled on 2009-01-20

GenBank Submission: BT058011.1

> IP09740.complete
CCGATATGAAGTTCCTAGCTCTTTTCGTCACTTTGCTGGTTGTTCTGGCT
TTGGTTAGCGCCCAAAAGAGCCAGAATACAAATCACAACGTCATCGTCAT
CGGTGCCAAGAAGCCAGGAGCTGCACCTGCCGCAGCAGCTGCTGCTGCTC
CTGCCGCACCTCCTGCCGCAGCTCCTGCCGCAGCTCCAGCTGCTCCTGAA
GCAGGACTCGCAGATGCTCCAGCCGAAAGTTAAATATTATGAGTCAGAGG
TTATTTTCTTCTAATAAAATGGATCGCTAATCACAATAAAAAAAAAAAAA
AAAAAA

IP09740.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:19:17
Subject Length Description Subject Range Query Range Score Percent Strand
Mst57Da-RA 721 Mst57Da-RA 415..702 1..288 1440 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 21654554..21654840 287..1 1435 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:59:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25831594..25831881 288..1 1440 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 25572425..25572712 288..1 1440 100 Minus
Blast to na_te.dros performed 2019-03-16 13:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
G4 3856 G4 G4_DM 3856bp 724..763 52..12 103 75.6 Minus

IP09740.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:58:20 Download gff for IP09740.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 21654554..21654642 199..287 100 == Minus
chr3R 21654722..21654840 1..119 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:04:37 Download gff for IP09740.complete
Subject Subject Range Query Range Percent Splice Strand
Mst57Da-RA 1..228 6..233 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:28:44 Download gff for IP09740.complete
Subject Subject Range Query Range Percent Splice Strand
Mst57Da-RA 1..228 6..233 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:17:13 Download gff for IP09740.complete
Subject Subject Range Query Range Percent Splice Strand
Mst57Da-RA 1..228 6..233 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:21:10 Download gff for IP09740.complete
Subject Subject Range Query Range Percent Splice Strand
Mst57Da-RA 1..228 6..233 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-01-20 09:57:52 Download gff for IP09740.complete
Subject Subject Range Query Range Percent Splice Strand
Mst57Da-RA 415..701 1..287 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:28:44 Download gff for IP09740.complete
Subject Subject Range Query Range Percent Splice Strand
Mst57Da-RA 415..701 1..287 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:17:13 Download gff for IP09740.complete
Subject Subject Range Query Range Percent Splice Strand
Mst57Da-RA 19..305 1..287 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:10 Download gff for IP09740.complete
Subject Subject Range Query Range Percent Splice Strand
Mst57Da-RA 19..305 1..287 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:58:20 Download gff for IP09740.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25831595..25831881 1..287 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:58:20 Download gff for IP09740.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25831595..25831881 1..287 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:58:20 Download gff for IP09740.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25831595..25831881 1..287 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:17:13 Download gff for IP09740.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21657317..21657603 1..287 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:01:32 Download gff for IP09740.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25572426..25572712 1..287 100   Minus

IP09740.pep Sequence

Translation from 2 to 232

> IP09740.pep
DMKFLALFVTLLVVLALVSAQKSQNTNHNVIVIGAKKPGAAPAAAAAAAP
AAPPAAAPAAAPAAPEAGLADAPAES*

IP09740.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
Mst57Da-PA 75 CG9074-PA 1..75 2..76 360 100 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10659-PA 54 GE10659-PA 1..38 2..37 144 76.3 Plus

IP09740.hyp Sequence

Translation from 2 to 232

> IP09740.hyp
DMKFLALFVTLLVVLALVSAQKSQNTNHNVIVIGAKKPGAAPAAAAAAAP
AAPPAAAPAAAPAAPEAGLADAPAES*

IP09740.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
Mst57Da-PA 75 CG9074-PA 1..75 2..76 360 100 Plus