IP09740.complete Sequence
306 bp assembled on 2009-01-20
GenBank Submission: BT058011.1
> IP09740.complete
CCGATATGAAGTTCCTAGCTCTTTTCGTCACTTTGCTGGTTGTTCTGGCT
TTGGTTAGCGCCCAAAAGAGCCAGAATACAAATCACAACGTCATCGTCAT
CGGTGCCAAGAAGCCAGGAGCTGCACCTGCCGCAGCAGCTGCTGCTGCTC
CTGCCGCACCTCCTGCCGCAGCTCCTGCCGCAGCTCCAGCTGCTCCTGAA
GCAGGACTCGCAGATGCTCCAGCCGAAAGTTAAATATTATGAGTCAGAGG
TTATTTTCTTCTAATAAAATGGATCGCTAATCACAATAAAAAAAAAAAAA
AAAAAA
IP09740.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 21:19:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mst57Da-RA | 721 | Mst57Da-RA | 415..702 | 1..288 | 1440 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:57:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 21654554..21654840 | 287..1 | 1435 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:59:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:57:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25831594..25831881 | 288..1 | 1440 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:36:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 25572425..25572712 | 288..1 | 1440 | 100 | Minus |
Blast to na_te.dros performed 2019-03-16 13:57:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G4 | 3856 | G4 G4_DM 3856bp | 724..763 | 52..12 | 103 | 75.6 | Minus |
IP09740.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:58:20 Download gff for
IP09740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 21654554..21654642 | 199..287 | 100 | == | Minus |
chr3R | 21654722..21654840 | 1..119 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:04:37 Download gff for
IP09740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst57Da-RA | 1..228 | 6..233 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:28:44 Download gff for
IP09740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst57Da-RA | 1..228 | 6..233 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:17:13 Download gff for
IP09740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst57Da-RA | 1..228 | 6..233 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:21:10 Download gff for
IP09740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst57Da-RA | 1..228 | 6..233 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-01-20 09:57:52 Download gff for
IP09740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst57Da-RA | 415..701 | 1..287 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:28:44 Download gff for
IP09740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst57Da-RA | 415..701 | 1..287 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:17:13 Download gff for
IP09740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst57Da-RA | 19..305 | 1..287 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:10 Download gff for
IP09740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst57Da-RA | 19..305 | 1..287 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:58:20 Download gff for
IP09740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25831595..25831881 | 1..287 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:58:20 Download gff for
IP09740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25831595..25831881 | 1..287 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:58:20 Download gff for
IP09740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25831595..25831881 | 1..287 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:17:13 Download gff for
IP09740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21657317..21657603 | 1..287 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:01:32 Download gff for
IP09740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25572426..25572712 | 1..287 | 100 | | Minus |
IP09740.pep Sequence
Translation from 2 to 232
> IP09740.pep
DMKFLALFVTLLVVLALVSAQKSQNTNHNVIVIGAKKPGAAPAAAAAAAP
AAPPAAAPAAAPAAPEAGLADAPAES*
IP09740.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mst57Da-PA | 75 | CG9074-PA | 1..75 | 2..76 | 360 | 100 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:09:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE10659-PA | 54 | GE10659-PA | 1..38 | 2..37 | 144 | 76.3 | Plus |
IP09740.hyp Sequence
Translation from 2 to 232
> IP09740.hyp
DMKFLALFVTLLVVLALVSAQKSQNTNHNVIVIGAKKPGAAPAAAAAAAP
AAPPAAAPAAAPAAPEAGLADAPAES*
IP09740.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:19:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mst57Da-PA | 75 | CG9074-PA | 1..75 | 2..76 | 360 | 100 | Plus |