Clone IP09804 Report

Search the DGRC for IP09804

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:98
Well:4
Vector:pOT2
Associated Gene/TranscriptCG15260-RB
Protein status:IP09804.pep: gold
Preliminary Size:900
Sequenced Size:800

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15260 2008-04-29 Release 5.5 accounting

Clone Sequence Records

IP09804.complete Sequence

800 bp (800 high quality bases) assembled on 2005-06-08

GenBank Submission: BT023548

> IP09804.complete
ATTAAAAGTAAAGTAAAATCCTCCGGAATGAAGCGAATTGTGCCACTTTC
AGCAGACTTATTAAGTGACATAATGACCCACCGGAATGAGTATCACACAC
CACCTGGGCATTATATAGAGGCAGAACAAGTGGGTGATAACAGAGGACTA
TATGCGGCAACCAGTTCCCCCCAATTCTTGCCATCGGATGCGAGGCAACG
CACTGATGGATTTGCCGATGGACCCATTGTGGCGACCACTCCCGTTTCAG
AACTGACACCCAGTGAGGTACTGACCAGACTTGAGGCACGCCTGGATTTC
TTGGCGGCGGAAGTGCAAGAACTGCGCAAGTTGATACCTAAACCAATCAA
TCAGAATGAGGAGCCCTGCACGAGCGGGTCATATGGCTTAAAGCGCTCTC
AATCCGATCTATCGTTGATCCTTAAGTCGAGCTCGGACCTGAGACTCATC
AATTCCTCCAACGATCTGCATCTGCGAGGGGAGCAGTCGCTGGACAAACG
CAATCGCAAGGGGCAGTTGTACCGCGACATGCAGATGCATCTGACCAATA
TGATAGTCGTGCCCAAGTCACGCACCTCACTGTTTCTCAACCAGCGAAAG
GAATTGAACTCCCAATTGTGCCATTGGCGGCATCAATATTCGGATGAGGA
TTGGATGCAGAATTTCCAGAGCAGCTCCACGGAGGCCGAGCGGCGCTTCA
AGAATGTGCGTCGTCAGTGAAAGTAAAAGATTTCTTTGCTTGCCTCCTAA
ATAAAATTGAGAAATTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

IP09804.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:35:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG15260-RB 814 CG15260-RB 40..808 1..769 3845 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:15:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 15290214..15290982 769..1 3845 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:59:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15291432..15292200 769..1 3845 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:26:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15291432..15292200 769..1 3845 100 Minus
Blast to na_te.dros performed on 2019-03-16 07:15:20 has no hits.

IP09804.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:16:31 Download gff for IP09804.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 15290214..15290982 1..769 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:42:49 Download gff for IP09804.complete
Subject Subject Range Query Range Percent Splice Strand
CG15260-RA 1..690 28..717 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:00:22 Download gff for IP09804.complete
Subject Subject Range Query Range Percent Splice Strand
CG15260-RB 1..693 28..720 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:06:57 Download gff for IP09804.complete
Subject Subject Range Query Range Percent Splice Strand
CG15260-RB 1..693 28..720 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:40:53 Download gff for IP09804.complete
Subject Subject Range Query Range Percent Splice Strand
CG15260-RA 1..690 28..717 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:28:33 Download gff for IP09804.complete
Subject Subject Range Query Range Percent Splice Strand
CG15260-RB 1..693 28..720 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:43:00 Download gff for IP09804.complete
Subject Subject Range Query Range Percent Splice Strand
CG15260-RA 40..756 1..717 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:00:22 Download gff for IP09804.complete
Subject Subject Range Query Range Percent Splice Strand
CG15260-RB 40..808 1..769 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:57 Download gff for IP09804.complete
Subject Subject Range Query Range Percent Splice Strand
CG15260-RB 40..808 1..769 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:40:53 Download gff for IP09804.complete
Subject Subject Range Query Range Percent Splice Strand
CG15260-RA 40..756 1..717 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:28:33 Download gff for IP09804.complete
Subject Subject Range Query Range Percent Splice Strand
CG15260-RB 40..808 1..769 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:16:31 Download gff for IP09804.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15291432..15292200 1..769 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:16:31 Download gff for IP09804.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15291432..15292200 1..769 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:16:31 Download gff for IP09804.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15291432..15292200 1..769 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:57 Download gff for IP09804.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15291432..15292200 1..769 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:19:51 Download gff for IP09804.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15291432..15292200 1..769 100   Minus

IP09804.pep Sequence

Translation from 0 to 719

> IP09804.pep
IKSKVKSSGMKRIVPLSADLLSDIMTHRNEYHTPPGHYIEAEQVGDNRGL
YAATSSPQFLPSDARQRTDGFADGPIVATTPVSELTPSEVLTRLEARLDF
LAAEVQELRKLIPKPINQNEEPCTSGSYGLKRSQSDLSLILKSSSDLRLI
NSSNDLHLRGEQSLDKRNRKGQLYRDMQMHLTNMIVVPKSRTSLFLNQRK
ELNSQLCHWRHQYSDEDWMQNFQSSSTEAERRFKNVRRQ*

IP09804.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24214-PA 297 GG24214-PA 1..240 5..239 658 58.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG15260-PB 230 CG15260-PB 1..230 10..239 1187 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14445-PA 199 GM14445-PA 2..199 3..201 694 71.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:54:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21961-PA 188 GD21961-PA 2..188 3..201 618 66.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:54:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19408-PA 294 GE19408-PA 7..242 11..235 716 63.6 Plus

IP09804.hyp Sequence

Translation from 0 to 719

> IP09804.hyp
IKSKVKSSGMKRIVPLSADLLSDIMTHRNEYHTPPGHYIEAEQVGDNRGL
YAATSSPQFLPSDARQRTDGFADGPIVATTPVSELTPSEVLTRLEARLDF
LAAEVQELRKLIPKPINQNEEPCTSGSYGLKRSQSDLSLILKSSSDLRLI
NSSNDLHLRGEQSLDKRNRKGQLYRDMQMHLTNMIVVPKSRTSLFLNQRK
ELNSQLCHWRHQYSDEDWMQNFQSSSTEAERRFKNVRRQ*

IP09804.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG15260-PB 230 CG15260-PB 1..230 10..239 1187 100 Plus