Clone IP09923 Report

Search the DGRC for IP09923

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:99
Well:23
Vector:pOT2
Associated Gene/TranscriptPgam5-2-RA
Protein status:IP09923.pep: gold
Preliminary Size:843
Sequenced Size:1413

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15874 2008-04-29 Release 5.5 accounting
CG15874 2008-08-15 Release 5.9 accounting
CG15874 2008-12-18 5.12 accounting

Clone Sequence Records

IP09923.complete Sequence

1413 bp (1413 high quality bases) assembled on 2006-01-24

GenBank Submission: BT024338

> IP09923.complete
AATATATACTTTGATAAATCTGAATCCCACGTCTGCCATGAAATACACCG
CCCTTTGGCGCTCGGTGGGCGCCATGAGCTGCGGATCCCTGGTCACCTAC
TTTGCCATCCGGCTGTTCGATGGCCTGGAACCCTCCATGTTATCAGGTGG
AGCACAAGGGGGTAAGGGGCGGGCGATTGAACCTTTGGCCAGTGGCGCCT
GGCGGCACCATTGGGACTTGGACAAGCCGCAGCTGCAAAAGGTGGCAAAT
GGCGAGGAGTCCTCCGCCCTGCGACACATTATCCTGGTGAGACATGGCGA
GTACACGAGGACCCCGAATGGAAGCCACCTCACGGAACTGGGCCGTCGGC
AGGCGGAACGGACGGGGCAAAGGTTGCGGGAAATGGGCTTGTCCTGGGAC
CACGTGGTGGCCTCTACAATGCCGCGTGCCGAGGAGACGGCCATGATCAT
CCTGAAGCAGCTGAACCTCGATCCCCTGAAGATGAAGCGCTGCACTTTGC
TGCCGGAGGGCACTCCGTACCCAGGAGATCCCCCCTCCAAGAGGAGTGCC
CGCAGCCTGGACCTGGCCTATCAGAGGGATGGTCCGCGGATCGAGGCCGC
CTTTAGGCGCTACTTCTTCAGGGCCAGTCCGGAGCAGGAGCACGACTCGT
ACCTGCTCATCGTGGGCCACTCGAATGTGATCCGTTACCTGATTCTGCGG
GCCCTGCAGCTTCCTCCGGCCGCCTGGACGCGCCTCAACCTGAACCACGG
CTCCATCACCTGGCTGACTGTGTGGCCGTCTGGCTACGTTACCTTGCGCT
GCTTGGGGGACTCCGGCTTCATGCCGGTGACCGAGATCACCCATCGAAGG
CCGTCACCGGCGAAATCCGGCAGTAACTAGCTCATGATTAAAGCCAAGCT
CCGGGATGCGTCTTGGGCACGGACTCGAGGGACTAGCTCATTTTGCAGTA
CGAGTGGGAACGTGACTTCATGCACATTTTGTCGCAACTGTGTGAAAACC
ACTTTAACTTTGCCCAAAATCACTTGGCCAACACACTGCCAACTGCATCT
GCATCCGCATGCCAGCACAGTCACATTCGCATACATCCACATCCACATCC
ACATCCACGTCCACGTCCAGTGGCCACAATTCTGGCGGCTGCCACGCCCA
AAGCGGTCATCCCGCCCACTTTTTGGCCACCCGGTAGTTGGCACATTTGC
GCTACTCTTTTGGGATTGTCTCTGCTCATTAGTGCGGCTTTAATTTTGGT
TATTGCGCCTGTCCCATGTTGTTCGGTTCGGTTTTGGTTTCTGGTCTCGG
TTTTCCGCCTCTGGTTTTGGCCATCGTCGACGATGTTGCCTTTGCGTTGC
CGTTTGCCGCTGGCGTTTCATTAAATTTGCATCGCTCCGCAAAAAAAAAA
AAAAAAAAAAAAA

IP09923.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG15874-RA 1390 CG15874-RA 1..1390 1..1390 6950 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20317257..20318646 1390..1 6655 98.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:00:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24431342..24432733 1392..1 6960 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24432541..24433932 1392..1 6960 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:08:28 has no hits.

IP09923.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:09:08 Download gff for IP09923.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20317257..20318646 1..1390 96   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:43:52 Download gff for IP09923.complete
Subject Subject Range Query Range Percent Splice Strand
CG15874-RA 1..843 38..880 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:35:32 Download gff for IP09923.complete
Subject Subject Range Query Range Percent Splice Strand
CG15874-RA 1..843 38..880 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:03:20 Download gff for IP09923.complete
Subject Subject Range Query Range Percent Splice Strand
Pgam5-2-RA 1..843 38..880 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:10:08 Download gff for IP09923.complete
Subject Subject Range Query Range Percent Splice Strand
CG15874-RA 1..843 38..880 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:29:35 Download gff for IP09923.complete
Subject Subject Range Query Range Percent Splice Strand
Pgam5-2-RA 1..843 38..880 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:07:00 Download gff for IP09923.complete
Subject Subject Range Query Range Percent Splice Strand
CG15874-RA 1..843 38..880 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:35:31 Download gff for IP09923.complete
Subject Subject Range Query Range Percent Splice Strand
CG15874-RA 1..1390 1..1390 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:03:20 Download gff for IP09923.complete
Subject Subject Range Query Range Percent Splice Strand
Pgam5-2-RA 1..1390 1..1390 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:10:09 Download gff for IP09923.complete
Subject Subject Range Query Range Percent Splice Strand
CG15874-RA 1..843 38..880 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:29:35 Download gff for IP09923.complete
Subject Subject Range Query Range Percent Splice Strand
Pgam5-2-RA 1..1390 1..1390 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:09:08 Download gff for IP09923.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24431344..24432733 1..1390 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:09:08 Download gff for IP09923.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24431344..24432733 1..1390 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:09:08 Download gff for IP09923.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24431344..24432733 1..1390 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:03:20 Download gff for IP09923.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20318867..20320256 1..1390 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:59:18 Download gff for IP09923.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24432561..24433950 1..1390 100   Minus

IP09923.hyp Sequence

Translation from 0 to 879

> IP09923.hyp
IYTLINLNPTSAMKYTALWRSVGAMSCGSLVTYFAIRLFDGLEPSMLSGG
AQGGKGRAIEPLASGAWRHHWDLDKPQLQKVANGEESSALRHIILVRHGE
YTRTPNGSHLTELGRRQAERTGQRLREMGLSWDHVVASTMPRAEETAMII
LKQLNLDPLKMKRCTLLPEGTPYPGDPPSKRSARSLDLAYQRDGPRIEAA
FRRYFFRASPEQEHDSYLLIVGHSNVIRYLILRALQLPPAAWTRLNLNHG
SITWLTVWPSGYVTLRCLGDSGFMPVTEITHRRPSPAKSGSN*

IP09923.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
Pgam5-2-PA 280 CG15874-PA 1..280 13..292 1486 100 Plus
Pgam5-PB 288 CG14816-PB 2..286 20..289 576 44.2 Plus
Pgam5-PA 289 CG14816-PA 2..287 20..289 573 44.2 Plus

IP09923.pep Sequence

Translation from 37 to 879

> IP09923.pep
MKYTALWRSVGAMSCGSLVTYFAIRLFDGLEPSMLSGGAQGGKGRAIEPL
ASGAWRHHWDLDKPQLQKVANGEESSALRHIILVRHGEYTRTPNGSHLTE
LGRRQAERTGQRLREMGLSWDHVVASTMPRAEETAMIILKQLNLDPLKMK
RCTLLPEGTPYPGDPPSKRSARSLDLAYQRDGPRIEAAFRRYFFRASPEQ
EHDSYLLIVGHSNVIRYLILRALQLPPAAWTRLNLNHGSITWLTVWPSGY
VTLRCLGDSGFMPVTEITHRRPSPAKSGSN*

IP09923.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:21:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11250-PA 287 GF11250-PA 1..276 1..275 1130 75.2 Plus
Dana\GF21073-PA 289 GF21073-PA 2..287 8..277 605 45.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:21:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19931-PA 280 GG19931-PA 1..280 1..280 1368 91.1 Plus
Dere\GG12675-PA 289 GG12675-PA 2..287 8..277 603 45.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20896-PA 266 GH20896-PA 1..265 1..268 923 64 Plus
Dgri\GH24297-PA 289 GH24297-PA 2..287 8..277 590 45.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
Pgam5-2-PA 280 CG15874-PA 1..280 1..280 1486 100 Plus
Pgam5-PB 288 CG14816-PB 2..286 8..277 576 44.2 Plus
Pgam5-PA 289 CG14816-PA 2..287 8..277 573 44.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18906-PA 278 GI18906-PA 1..274 1..273 927 61.9 Plus
Dmoj\GI16420-PA 289 GI16420-PA 2..287 8..277 603 45 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20215-PA 289 GL20215-PA 2..287 8..277 621 45.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13996-PA 267 GA13996-PA 27..254 38..268 727 59.5 Plus
Dpse\GA13269-PA 289 GA13269-PA 2..287 8..277 622 45.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11831-PA 135 GM11831-PA 1..132 1..132 677 97 Plus
Dsec\GM18947-PA 289 GM18947-PA 2..287 8..277 588 44.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24953-PA 153 GD24953-PA 1..153 128..280 806 98.7 Plus
Dsim\GD16411-PA 289 GD16411-PA 2..287 8..277 587 44.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20730-PA 274 GJ20730-PA 1..269 1..272 956 65.3 Plus
Dvir\GJ17041-PA 289 GJ17041-PA 2..287 8..277 613 46.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19686-PA 282 GK19686-PA 1..276 1..272 836 58.3 Plus
Dwil\GK25607-PA 291 GK25607-PA 2..289 8..277 602 45.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11458-PA 273 GE11458-PA 1..272 1..272 1365 94.1 Plus
Dyak\GE16503-PA 289 GE16503-PA 2..287 8..277 575 43.3 Plus