Clone IP09925 Report

Search the DGRC for IP09925

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:99
Well:25
Vector:pOT2
Associated Gene/TranscriptCG15888-RB
Protein status:IP09925.pep: gold
Preliminary Size:777
Sequenced Size:1097

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15888 2005-01-01 Successful iPCR screen
CG15888 2008-04-29 Release 5.5 accounting
CG15888 2008-08-15 Release 5.9 accounting
CG15888 2008-12-18 5.12 accounting

Clone Sequence Records

IP09925.complete Sequence

1097 bp (1097 high quality bases) assembled on 2005-03-06

GenBank Submission: BT023230

> IP09925.complete
TTGTGTTGTGTAGGCAGAAGCGAAATAAACATACAAAAATGCGAGCTAAC
TCGACGAGATCCTTATCCTGGCACATCCTGCTCGGACTTTGCCTATGTCT
CCTGCAGAACCTCCACCCATCACTTGGCCAAGATGCAGTGCATCCTAGCG
AAGACTTGAACCCAAGCACTGGTCGTAGTCAGTCGGCGAATAGTGTATCA
TACTTTAAGGCGTCCATTCCAATGAGAATCTACGAGTGTCTGCGGGAGTT
CACCATGCTACACTGCACGAAATTGTACGTTCTGCAGAAAATGGAGGAGC
GCCGCCAGATGCCAAACAGTGGAAATCTCACCCGCGACTTTGTGGATCAG
TTCTTCGGGGACGAGACACAGATGGGCAGCCTGGTGGGCAAGAAGTACCA
CAAAATGTCCGAAAAGGAGCTCAACCAGCGGCTGGTTGTTAATTTTCAGC
GATTCTTTAAGCATCGTGATCTCAAGATGCATATCCTGCCCGGAATGCTG
GTGAAGATTGTGCCCAGCAAGGACAACAAACTGAAGTTCTCGATCAAGAA
GGCACCCAAATCCCGGATGGGTCGTTCCCGAAGACGTGAGACCGAAGAAA
TGGACCTGCCCCTTATTAATATTCCGTCCATCGGTGGGGGTGGTGCCAAT
AGTGGAAGTGTGGAGACCTACGAACCGGAAGCGGAAGGAGATTCCAAGCA
GCAGGGGCTATTGGGGGGCGGAGGAGGCGTGGCCGGTGGCGAGGGGGGCG
GCGGAGGCATTCTGGGCAAGCGCAAGAAAAAGAACTCGTACAAGGTGACC
ATGATGCAGGTGGCGGTGCCCATGCTGATCTTCCCCGTCGTCCTGCTTGG
CAGTCTCCTGCCCTTCATCCTGCCCGCCCTTAAGATGGCCACCATCCTGT
CGCTGGTGATGAACAATGGCGCCTTTATGGCAGCTTTACTGTATGCCGCC
CGTACCCAGTTCAACACCCACGAGGAGCAGCACATCAGCTACAGTTAGCT
CCCGCATTAGTGTCCATCCTTCGATCATTTTCCATTAAATGCCTCTTTCT
TTGCTTCATTATTTCCATGTGTGTGGAAAAAAAAAATAAAAAAAAAA

IP09925.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:47:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG15888-RB 1181 CG15888-RB 72..1168 1..1097 5485 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 9111141..9111690 550..1 2660 98.9 Minus
chr3R 27901430 chr3R 9110120..9110655 1087..552 2620 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:00:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13285978..13286529 552..1 2760 100 Minus
3R 32079331 3R 13284949..13285494 1097..552 2730 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 13026809..13027360 552..1 2760 100 Minus
3R 31820162 3R 13025780..13026325 1097..552 2730 100 Minus
Blast to na_te.dros performed 2019-03-16 23:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
copia 5143 copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). 3719..3786 1072..1005 124 64.7 Minus

IP09925.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:57:06 Download gff for IP09925.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 9110131..9110654 553..1076 99 <- Minus
chr3R 9111139..9111690 1..552 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:43:53 Download gff for IP09925.complete
Subject Subject Range Query Range Percent Splice Strand
CG15888-RB 1..960 39..998 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:17:18 Download gff for IP09925.complete
Subject Subject Range Query Range Percent Splice Strand
CG15888-RB 1..960 39..998 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:53:52 Download gff for IP09925.complete
Subject Subject Range Query Range Percent Splice Strand
CG15888-RB 1..960 39..998 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:01:41 Download gff for IP09925.complete
Subject Subject Range Query Range Percent Splice Strand
CG15888-RB 1..960 39..998 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:04:05 Download gff for IP09925.complete
Subject Subject Range Query Range Percent Splice Strand
CG15888-RB 1..960 39..998 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:16:48 Download gff for IP09925.complete
Subject Subject Range Query Range Percent Splice Strand
CG15888-RB 1..1076 1..1076 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:17:18 Download gff for IP09925.complete
Subject Subject Range Query Range Percent Splice Strand
CG15888-RB 1..1076 1..1076 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:52 Download gff for IP09925.complete
Subject Subject Range Query Range Percent Splice Strand
CG15888-RB 1..1076 1..1076 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:01:41 Download gff for IP09925.complete
Subject Subject Range Query Range Percent Splice Strand
CG15888-RB 1..1076 1..1076 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:04:05 Download gff for IP09925.complete
Subject Subject Range Query Range Percent Splice Strand
CG15888-RB 1..1076 1..1076 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:57:06 Download gff for IP09925.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13284970..13285493 553..1076 100 <- Minus
3R 13285978..13286529 1..552 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:57:06 Download gff for IP09925.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13284970..13285493 553..1076 100 <- Minus
3R 13285978..13286529 1..552 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:57:06 Download gff for IP09925.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13284970..13285493 553..1076 100 <- Minus
3R 13285978..13286529 1..552 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:52 Download gff for IP09925.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9110692..9111215 553..1076 100 <- Minus
arm_3R 9111700..9112251 1..552 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:37:24 Download gff for IP09925.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13025801..13026324 553..1076 100 <- Minus
3R 13026809..13027360 1..552 100   Minus

IP09925.hyp Sequence

Translation from 2 to 997

> IP09925.hyp
VLCRQKRNKHTKMRANSTRSLSWHILLGLCLCLLQNLHPSLGQDAVHPSE
DLNPSTGRSQSANSVSYFKASIPMRIYECLREFTMLHCTKLYVLQKMEER
RQMPNSGNLTRDFVDQFFGDETQMGSLVGKKYHKMSEKELNQRLVVNFQR
FFKHRDLKMHILPGMLVKIVPSKDNKLKFSIKKAPKSRMGRSRRRETEEM
DLPLINIPSIGGGGANSGSVETYEPEAEGDSKQQGLLGGGGGVAGGEGGG
GGILGKRKKKNSYKVTMMQVAVPMLIFPVVLLGSLLPFILPALKMATILS
LVMNNGAFMAALLYAARTQFNTHEEQHISYS*

IP09925.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG15888-PB 319 CG15888-PB 1..319 13..331 1646 100 Plus

IP09925.pep Sequence

Translation from 38 to 997

> IP09925.pep
MRANSTRSLSWHILLGLCLCLLQNLHPSLGQDAVHPSEDLNPSTGRSQSA
NSVSYFKASIPMRIYECLREFTMLHCTKLYVLQKMEERRQMPNSGNLTRD
FVDQFFGDETQMGSLVGKKYHKMSEKELNQRLVVNFQRFFKHRDLKMHIL
PGMLVKIVPSKDNKLKFSIKKAPKSRMGRSRRRETEEMDLPLINIPSIGG
GGANSGSVETYEPEAEGDSKQQGLLGGGGGVAGGEGGGGGILGKRKKKNS
YKVTMMQVAVPMLIFPVVLLGSLLPFILPALKMATILSLVMNNGAFMAAL
LYAARTQFNTHEEQHISYS*

IP09925.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17396-PA 316 GF17396-PA 1..316 1..319 1255 83.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17067-PA 317 GG17067-PA 1..317 1..319 1455 95 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19148-PA 311 GH19148-PA 6..304 9..318 856 62.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG15888-PB 319 CG15888-PB 1..319 1..319 1646 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23256-PA 325 GI23256-PA 27..318 44..318 829 61.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23074-PA 320 GL23074-PA 28..320 30..319 1077 81.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14006-PA 320 GA14006-PA 28..320 30..319 1068 81.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25952-PA 319 GM25952-PA 1..319 1..319 1461 96.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20511-PA 319 GD20511-PA 1..319 1..319 1457 96.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10752-PA 267 GJ10752-PA 1..260 62..318 930 68.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13360-PA 318 GK13360-PA 9..318 13..319 1034 69.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24457-PA 319 GE24457-PA 1..319 1..319 1638 96.6 Plus