Clone IP09938 Report

Search the DGRC for IP09938

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:99
Well:38
Vector:pOT2
Associated Gene/TranscriptCG17189-RA
Protein status:IP09938.pep: gold
Preliminary Size:795
Sequenced Size:1014

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17189 2008-04-29 Release 5.5 accounting
CG17189 2008-08-15 Release 5.9 accounting
CG17189 2008-12-18 5.12 accounting

Clone Sequence Records

IP09938.complete Sequence

1014 bp (1014 high quality bases) assembled on 2006-07-25

GenBank Submission: BT028787

> IP09938.complete
TTAACTCGATTAAGGATCTCCGCTTGTTGTGTCTGCGATTCCCGCCGTGA
CAGTGACGCAAGCTTTCCACCATGCTCCTAATTGGATTACTAATGCTACT
CCATGCCGGCCTCCAAGGAGCCCAGTGTGTTGCCTTCTACACGGAAAAAC
CCTCCTATATTGAGTCCTGCAAGATTTATGAACCGGAGTTCACCAAGTGC
TCAACTCGTTCAATACAGGCATTTATGAACCAGCTCGTCAAAGGTGTGCC
CGAAATAGAGGAATCCTTTGGACCCATCGATCCCATGAGGCAGGAACAGC
TGGTGTTCAAGCAGGATAACAGCGACGTGGCCACCCTTTCCGCCAATCTT
ACGGATATGCTGATCAGGGGCTTTGGCAAAATGCTGATCAAGGAGAGCAA
AGTCAGCAAAAAGGATTTCAGCTGGCTAACTAAGATCTACCTGCCCCAAA
TGCGAATAGATGGTCACTACAAAATGGTCGGTCGCATTTTGCTCGTGCCT
CTGCAGGGAAATGGAAAAATAGTCATGGAAATAGATGATCTGGACATACT
GATGACCACCAAAACACGCCTCTACGAGAAGGGCGGCTATACATTTTACA
ACGTGACATCCGTGAAGGTAAAAGTGGACGTCGGCAAAGTTCGCACCAGA
TTGGATAACCTCTTCAACGGGCACAGCAAGGAGGTGGAAGATAGCACCAA
TCAGTTCTTTAACGACAATTGGAAGGATGTCTTCGAGGCACTGCGTCCGC
TGGTGGTTGAAACCGTGGAAAGAACGCTACTAGATCTACTCCACAAGACA
TTTGCCCTGTTTCCGGCCAGCTTCTTTGTGGAGGACATACCCACCTCCTT
AACCTTGTATGGTCGCAAGTCACACATGATCACTTGAAAGGTGTTCCATT
GAAATTTAATCCCACTTCCTTCAAACTGCCTTGGAATCTGCATCTTCTCT
ATGAAAATCTTACTGAAATTAATATAGAAATATTTCGAGGCAATCAAAAA
AAAAAAAAAAAAAA

IP09938.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG17189-RA 1171 CG17189-RA 177..1171 1..995 4960 99.8 Plus
CG17189.a 1171 CG17189.a 177..1171 1..995 4960 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 22925485..22925947 533..995 2300 99.8 Plus
chr3R 27901430 chr3R 22924853..22925011 242..400 795 100 Plus
chr3R 27901430 chr3R 22924436..22924585 1..150 705 98 Plus
chr3R 27901430 chr3R 22925293..22925426 401..534 655 99.3 Plus
chr3R 27901430 chr3R 22924703..22924798 151..246 480 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:00:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27102455..27102921 533..999 2335 100 Plus
3R 32079331 3R 27101823..27101981 242..400 795 100 Plus
3R 32079331 3R 27101406..27101555 1..150 750 100 Plus
3R 32079331 3R 27102263..27102396 401..534 655 99.3 Plus
3R 32079331 3R 27101673..27101768 151..246 480 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 26843286..26843752 533..999 2335 100 Plus
3R 31820162 3R 26842654..26842812 242..400 795 100 Plus
3R 31820162 3R 26842237..26842386 1..150 750 100 Plus
3R 31820162 3R 26843094..26843227 401..534 655 99.2 Plus
3R 31820162 3R 26842504..26842599 151..246 480 100 Plus
Blast to na_te.dros performed on 2019-03-15 20:18:29 has no hits.

IP09938.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:19:38 Download gff for IP09938.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 22924436..22924585 1..150 98 -> Plus
chr3R 22924703..22924795 151..243 100 -> Plus
chr3R 22924855..22925011 244..400 100 -> Plus
chr3R 22925293..22925426 401..534 99 -> Plus
chr3R 22925487..22925947 535..995 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:44:10 Download gff for IP09938.complete
Subject Subject Range Query Range Percent Splice Strand
CG17189-RA 1..795 93..887 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:21:12 Download gff for IP09938.complete
Subject Subject Range Query Range Percent Splice Strand
CG17189-RA 1..795 93..887 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:05:53 Download gff for IP09938.complete
Subject Subject Range Query Range Percent Splice Strand
CG17189-RA 1..795 93..887 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:39:29 Download gff for IP09938.complete
Subject Subject Range Query Range Percent Splice Strand
CG17189-RA 1..795 93..887 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:33:28 Download gff for IP09938.complete
Subject Subject Range Query Range Percent Splice Strand
CG17189-RA 1..795 93..887 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:49:46 Download gff for IP09938.complete
Subject Subject Range Query Range Percent Splice Strand
CG17189-RA 1..795 93..887 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:21:12 Download gff for IP09938.complete
Subject Subject Range Query Range Percent Splice Strand
CG17189-RA 1..995 1..995 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:05:53 Download gff for IP09938.complete
Subject Subject Range Query Range Percent Splice Strand
CG17189-RA 1..995 1..995 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:39:29 Download gff for IP09938.complete
Subject Subject Range Query Range Percent Splice Strand
CG17189-RA 1..795 93..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:33:28 Download gff for IP09938.complete
Subject Subject Range Query Range Percent Splice Strand
CG17189-RA 1..995 1..995 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:19:38 Download gff for IP09938.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27101406..27101555 1..150 100 -> Plus
3R 27101673..27101765 151..243 100 -> Plus
3R 27101825..27101981 244..400 100 -> Plus
3R 27102263..27102396 401..534 99 -> Plus
3R 27102457..27102917 535..995 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:19:38 Download gff for IP09938.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27101406..27101555 1..150 100 -> Plus
3R 27101673..27101765 151..243 100 -> Plus
3R 27101825..27101981 244..400 100 -> Plus
3R 27102263..27102396 401..534 99 -> Plus
3R 27102457..27102917 535..995 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:19:38 Download gff for IP09938.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27101406..27101555 1..150 100 -> Plus
3R 27101673..27101765 151..243 100 -> Plus
3R 27101825..27101981 244..400 100 -> Plus
3R 27102263..27102396 401..534 99 -> Plus
3R 27102457..27102917 535..995 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:05:53 Download gff for IP09938.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22927547..22927703 244..400 100 -> Plus
arm_3R 22927128..22927277 1..150 100 -> Plus
arm_3R 22927395..22927487 151..243 100 -> Plus
arm_3R 22927985..22928118 401..534 99 -> Plus
arm_3R 22928179..22928639 535..995 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:50:01 Download gff for IP09938.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26842237..26842386 1..150 100 -> Plus
3R 26842504..26842596 151..243 100 -> Plus
3R 26842656..26842812 244..400 100 -> Plus
3R 26843094..26843227 401..534 99 -> Plus
3R 26843288..26843748 535..995 100   Plus

IP09938.hyp Sequence

Translation from 71 to 886

> IP09938.hyp
MLLIGLLMLLHAGLQGAQCVAFYTEKPSYIESCKIYEPEFTKCSTRSIQA
FMNQLVKGVPEIEESFGPIDPMRQEQLVFKQDNSDVATLSANLTDMLIRG
FGKMLIKESKVSKKDFSWLTKIYLPQMRIDGHYKMVGRILLVPLQGNGKI
VMEIDDLDILMTTKTRLYEKGGYTFYNVTSVKVKVDVGKVRTRLDNLFNG
HSKEVEDSTNQFFNDNWKDVFEALRPLVVETVERTLLDLLHKTFALFPAS
FFVEDIPTSLTLYGRKSHMIT*

IP09938.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17189-PA 264 CG17189-PA 1..264 8..271 1365 100 Plus
CG14259-PA 289 CG14259-PA 36..282 20..266 885 65.2 Plus
CG14457-PB 271 CG14457-PB 24..265 22..265 559 43.9 Plus
CG14457-PC 270 CG14457-PC 24..264 23..265 554 43.2 Plus
CG14457-PA 144 CG14457-PA 1..138 127..265 373 48.9 Plus

IP09938.pep Sequence

Translation from 71 to 886

> IP09938.pep
MLLIGLLMLLHAGLQGAQCVAFYTEKPSYIESCKIYEPEFTKCSTRSIQA
FMNQLVKGVPEIEESFGPIDPMRQEQLVFKQDNSDVATLSANLTDMLIRG
FGKMLIKESKVSKKDFSWLTKIYLPQMRIDGHYKMVGRILLVPLQGNGKI
VMEIDDLDILMTTKTRLYEKGGYTFYNVTSVKVKVDVGKVRTRLDNLFNG
HSKEVEDSTNQFFNDNWKDVFEALRPLVVETVERTLLDLLHKTFALFPAS
FFVEDIPTSLTLYGRKSHMIT*

IP09938.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23276-PA 272 GF23276-PA 1..271 1..271 1215 81.5 Plus
Dana\GF23275-PA 278 GF23275-PA 14..275 6..266 893 61.8 Plus
Dana\GF10987-PA 272 GF10987-PA 24..266 21..265 587 44.1 Plus
Dana\GF23274-PA 253 GF23274-PA 8..251 6..255 325 29.5 Plus
Dana\GF11323-PA 261 GF11323-PA 34..255 27..256 285 26.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11526-PA 271 GG11526-PA 11..271 11..271 1300 91.6 Plus
Dere\GG11525-PA 290 GG11525-PA 33..285 17..269 919 64.4 Plus
Dere\GG16269-PA 272 GG16269-PA 24..266 21..265 577 44.5 Plus
Dere\GG11524-PA 258 GG11524-PA 11..256 6..255 362 31.5 Plus
Dere\GG20212-PA 259 GG20212-PA 35..256 27..256 275 28 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18635-PA 307 GH18635-PA 62..306 26..270 954 66.9 Plus
Dgri\GH18634-PA 279 GH18634-PA 13..277 5..267 846 56.6 Plus
Dgri\GH16705-PA 271 GH16705-PA 23..265 21..265 568 44.1 Plus
Dgri\GH18951-PA 261 GH18951-PA 21..259 18..255 322 31.8 Plus
Dgri\GH18633-PA 257 GH18633-PA 9..255 4..255 315 29 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG17189-PC 271 CG17189-PC 1..271 1..271 1396 100 Plus
CG17189-PB 271 CG17189-PB 1..271 1..271 1396 100 Plus
CG14259-PA 289 CG14259-PA 36..282 20..266 885 65.2 Plus
CG14457-PB 271 CG14457-PB 24..265 22..265 559 43.9 Plus
CG14457-PC 270 CG14457-PC 24..264 23..265 554 43.2 Plus
CG14457-PA 144 CG14457-PA 1..138 127..265 373 48.9 Plus
CG14258-PA 258 CG14258-PA 9..256 4..255 360 33.1 Plus
CG10407-PB 259 CG10407-PB 9..256 2..256 280 27.9 Plus
CG10407-PA 259 CG10407-PA 9..256 2..256 280 27.9 Plus
CG10407-PC 263 CG10407-PC 9..260 2..256 265 27.5 Plus
CG10264-PA 270 CG10264-PA 43..253 25..241 246 30 Plus
CG11854-PB 250 CG11854-PB 13..243 19..248 211 24.6 Plus
CG13618-PA 252 CG13618-PA 8..245 6..248 197 26.6 Plus
CG11852-PA 250 CG11852-PA 1..242 7..245 187 24.5 Plus
CG1124-PA 246 CG1124-PA 20..246 25..255 183 21.2 Plus
CG14661-PB 246 CG14661-PB 24..241 27..250 180 25.4 Plus
CG14661-PA 246 CG14661-PA 24..241 27..250 180 25.4 Plus
CG17279-PD 245 CG17279-PD 20..238 27..248 171 23.2 Plus
to-PB 249 CG11853-PB 59..248 69..255 166 23.6 Plus
to-PA 249 CG11853-PA 59..248 69..255 166 23.6 Plus
CG31189-PB 258 CG31189-PB 24..239 27..244 160 21.6 Plus
CG5945-PB 250 CG5945-PB 5..250 4..255 154 21.3 Plus
CG5945-PA 250 CG5945-PA 5..250 4..255 154 21.3 Plus
CG5867-PA 262 CG5867-PA 34..259 25..253 154 22.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24307-PA 273 GI24307-PA 24..271 22..269 1010 70.6 Plus
Dmoj\GI24306-PA 271 GI24306-PA 18..270 14..266 860 58.5 Plus
Dmoj\GI13915-PA 271 GI13915-PA 24..265 22..265 575 44.7 Plus
Dmoj\GI10889-PA 161 GI10889-PA 2..160 108..266 554 61 Plus
Dmoj\GI24305-PA 261 GI24305-PA 27..259 22..255 337 27.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23901-PA 274 GL23901-PA 1..274 1..271 1115 74.8 Plus
Dper\GL23900-PA 296 GL23900-PA 18..282 3..266 919 62.6 Plus
Dper\GL23899-PA 258 GL23899-PA 11..256 6..255 374 31.6 Plus
Dper\GL12216-PA 269 GL12216-PA 42..268 25..253 248 27.5 Plus
Dper\GL12408-PA 265 GL12408-PA 38..254 27..247 242 24.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27099-PA 263 GA27099-PA 1..263 6..271 1121 77.1 Plus
Dpse\GA12864-PA 296 GA12864-PA 35..282 19..266 916 64.9 Plus
Dpse\GA23226-PA 296 GA23226-PA 18..282 3..266 910 62.3 Plus
Dpse\GA12999-PA 278 GA12999-PA 12..272 10..265 586 44.5 Plus
Dpse\GA27098-PA 258 GA27098-PA 11..256 6..255 373 31.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10367-PA 271 GM10367-PA 1..271 1..271 1426 98.2 Plus
Dsec\GM10365-PA 289 GM10365-PA 33..285 17..269 910 64 Plus
Dsec\GM22460-PA 273 GM22460-PA 6..267 1..265 577 43.4 Plus
Dsec\GM10364-PA 258 GM10364-PA 8..256 3..255 373 32.9 Plus
Dsec\GM25738-PA 230 GM25738-PA 6..222 27..247 275 28.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21326-PA 264 GD21326-PA 1..264 8..271 1380 97.3 Plus
Dsim\GD21325-PA 289 GD21325-PA 17..285 1..269 913 61.3 Plus
Dsim\GD15043-PA 271 GD15043-PA 6..265 3..265 574 43.3 Plus
Dsim\GD19070-PA 270 GD19070-PA 43..253 25..241 254 29.5 Plus
Dsim\GD20311-PA 199 GD20311-PA 6..196 27..256 228 27.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23085-PA 262 GJ23085-PA 3..262 12..271 1037 69.2 Plus
Dvir\GJ23084-PA 273 GJ23084-PA 10..268 5..265 853 57.9 Plus
Dvir\GJ11649-PA 271 GJ11649-PA 4..265 3..265 561 42.8 Plus
Dvir\GJ23083-PA 261 GJ23083-PA 12..259 1..255 337 28.9 Plus
Dvir\GJ24135-PA 263 GJ24135-PA 19..261 14..255 313 29.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11048-PA 276 GK11048-PA 1..276 1..271 1049 70.7 Plus
Dwil\GK11046-PA 288 GK11046-PA 17..282 2..267 934 63.5 Plus
Dwil\GK11047-PA 286 GK11047-PA 14..280 1..267 931 61.8 Plus
Dwil\GK16767-PA 272 GK16767-PA 24..266 21..265 585 45.7 Plus
Dwil\GK11044-PA 258 GK11044-PA 25..256 22..255 340 31.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23715-PA 268 GE23715-PA 11..268 11..271 1310 93.5 Plus
Dyak\GE23714-PA 290 GE23714-PA 33..285 17..269 893 62.1 Plus
Dyak\GE22627-PA 271 GE22627-PA 1..265 1..265 574 42.6 Plus
Dyak\GE23713-PA 258 GE23713-PA 8..257 3..256 372 32 Plus
Dyak\GE26341-PA 259 GE26341-PA 35..256 27..256 276 27.6 Plus