Clone IP09950 Report

Search the DGRC for IP09950

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:99
Well:50
Vector:pOT2
Associated Gene/Transcriptslx1-RB
Protein status:IP09950.pep: gold
Preliminary Size:925
Sequenced Size:1145

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18271 2008-04-29 Release 5.5 accounting
MED31 2008-08-15 Release 5.9 accounting
MED31 2008-12-18 5.12 accounting

Clone Sequence Records

IP09950.complete Sequence

1145 bp (1145 high quality bases) assembled on 2006-09-19

GenBank Submission: BT029079

> IP09950.complete
TCGCCGGCCATCAACAATCCAAATGAACTCCTACGACCCACAGGACACAG
CTTCTCAACAGGAGGAATCCGTCGCGCTGAAGGGCCACTTCTACGGCGTC
TATTTGCTATGCAGTCAGAGCTTGGATCCTCGCTACCGGGGAAAATGCTA
CGTGGGCTTCACCGTGAACCCCAAACGGCGGATACGCCAACACAATCTTG
GTTGTGATTTCGGTGGCGCGAGGAAAACCAGTCGCAAAGGGCCGTGGCTG
ATGGTAATGATCGTGCACGGATTCCCGAATAATACAGTGGCACTCCAGTT
TGAATGGGCTTGGCAACAGCCGTCGCTTTCAACTAGGCTTAAAATGTACC
CTGAATTAAAACGAAAACTGCCCAGGGAGACGTTCTTTGACTACAACTTT
AGGATCCTTAGTAATATGCTGGGGGTTGGCCCTTGGAATAGATTACCGCT
CACCGTTCGCTGGCTAGAAACGGATTACGAGAGGCCATTCAGCAAGGCAC
TGCCTAAACACATGGAAATTGTGAGTGGCAAGGTTTCCATTAGTGCCTCA
CAACGTAGGAGACCTGATGATGCAGTACCTCCTCCACCTGTGGCGTGGGC
TTCCGAGTGCCACCTTTGTATGCAGGAAATGGAGCAACCGGAGAAATCCC
GCCTGGGATGCACAAATCAAATGTGTCGGCTGACATGCCATATGGTGTGC
CTGGCCAATTACCTTCTGGGCGACGAGCCAGGTCATTACATCCCAGTTGG
AGGAGAGTGTCCGCTTTGTGAGACTCGTCTCAGCTGGGCAGCACTGCTGC
AGCGCAAACGTCTTCTTTTGGGCGTGCCTGAAGAACTGCAGGATCATGAC
GAGGATCTGAGCGACGACATTGATGTAGACAGCGATATTGAAGATACCCC
GGAGCTCAGCGATTAGTTGAGGACCCATTTCATTTTATTTACAAATGCTA
AGGTATCGCATAAGCTAAAAGTATCTAGGCAAACACCATCTTAATGCGCT
TGTAAAAGTAAACATTTTAACTAAATACTTTAAAAATATTTCCAATAGAT
AATACTGAGTATAATTTAGATTTGTTTGCGGTATTTAAGGTTTAAACGAA
AGAAATTAAATGCTGAAATTTAAAGTGTAAAAAAAAAAAAAAAAA

IP09950.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:15:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG18271-RB 1128 CG18271-RB 1..1128 1..1128 5640 100 Plus
Dip2-RA 1027 Dip2-RA 913..1027 1134..1020 560 99.1 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 469253..470346 35..1128 5470 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:00:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4643543..4644642 35..1134 5485 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:09:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4384374..4385473 35..1134 5485 99.9 Plus
3R 31820162 3R 4382805..4382839 1..35 175 100 Plus
Blast to na_te.dros performed 2019-03-16 10:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
G7 1192 G7 G7 1192bp 1085..1170 1094..1010 121 61.6 Minus

IP09950.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:15:42 Download gff for IP09950.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 467684..467718 1..35 100 -> Plus
chr3R 469254..470346 36..1128 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:44:15 Download gff for IP09950.complete
Subject Subject Range Query Range Percent Splice Strand
CG18271-RA 33..924 24..916 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:26:40 Download gff for IP09950.complete
Subject Subject Range Query Range Percent Splice Strand
CG18271-RB 1..894 23..916 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:18:26 Download gff for IP09950.complete
Subject Subject Range Query Range Percent Splice Strand
slx1-RB 1..894 23..916 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:46:49 Download gff for IP09950.complete
Subject Subject Range Query Range Percent Splice Strand
CG18271-RA 33..924 24..916 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:01:31 Download gff for IP09950.complete
Subject Subject Range Query Range Percent Splice Strand
slx1-RB 1..894 23..916 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:55:15 Download gff for IP09950.complete
Subject Subject Range Query Range Percent Splice Strand
CG18271-RA 34..925 24..916 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:26:40 Download gff for IP09950.complete
Subject Subject Range Query Range Percent Splice Strand
CG18271-RB 1..1128 1..1128 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:18:26 Download gff for IP09950.complete
Subject Subject Range Query Range Percent Splice Strand
slx1-RB 12..1139 1..1128 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:46:49 Download gff for IP09950.complete
Subject Subject Range Query Range Percent Splice Strand
CG18271-RA 34..925 24..916 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:01:31 Download gff for IP09950.complete
Subject Subject Range Query Range Percent Splice Strand
slx1-RB 12..1139 1..1128 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:15:42 Download gff for IP09950.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4641974..4642008 1..35 100 -> Plus
3R 4643544..4644636 36..1128 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:15:42 Download gff for IP09950.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4641974..4642008 1..35 100 -> Plus
3R 4643544..4644636 36..1128 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:15:42 Download gff for IP09950.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4641974..4642008 1..35 100 -> Plus
3R 4643544..4644636 36..1128 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:18:26 Download gff for IP09950.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 467696..467730 1..35 100 -> Plus
arm_3R 469266..470358 36..1128 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:53:27 Download gff for IP09950.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4382805..4382839 1..35 100 -> Plus
3R 4384375..4385467 36..1128 100   Plus

IP09950.hyp Sequence

Translation from 0 to 915

> IP09950.hyp
RRPSTIQMNSYDPQDTASQQEESVALKGHFYGVYLLCSQSLDPRYRGKCY
VGFTVNPKRRIRQHNLGCDFGGARKTSRKGPWLMVMIVHGFPNNTVALQF
EWAWQQPSLSTRLKMYPELKRKLPRETFFDYNFRILSNMLGVGPWNRLPL
TVRWLETDYERPFSKALPKHMEIVSGKVSISASQRRRPDDAVPPPPVAWA
SECHLCMQEMEQPEKSRLGCTNQMCRLTCHMVCLANYLLGDEPGHYIPVG
GECPLCETRLSWAALLQRKRLLLGVPEELQDHDEDLSDDIDVDSDIEDTP
ELSD*

IP09950.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
slx1-PB 297 CG18271-PB 1..297 8..304 1626 100 Plus

IP09950.pep Sequence

Translation from 1 to 915

> IP09950.pep
RRPSTIQMNSYDPQDTASQQEESVALKGHFYGVYLLCSQSLDPRYRGKCY
VGFTVNPKRRIRQHNLGCDFGGARKTSRKGPWLMVMIVHGFPNNTVALQF
EWAWQQPSLSTRLKMYPELKRKLPRETFFDYNFRILSNMLGVGPWNRLPL
TVRWLETDYERPFSKALPKHMEIVSGKVSISASQRRRPDDAVPPPPVAWA
SECHLCMQEMEQPEKSRLGCTNQMCRLTCHMVCLANYLLGDEPGHYIPVG
GECPLCETRLSWAALLQRKRLLLGVPEELQDHDEDLSDDIDVDSDIEDTP
ELSD*

IP09950.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16665-PA 299 GF16665-PA 13..294 19..297 1246 80.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12527-PA 304 GG12527-PA 15..304 12..300 1434 90.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19497-PA 286 GH19497-PA 9..269 22..290 946 68.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
slx1-PB 297 CG18271-PB 1..297 8..304 1626 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23768-PA 303 GI23768-PA 7..303 16..304 1017 65.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22073-PA 291 GL22073-PA 6..291 20..304 1202 77.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27368-PA 291 GA27368-PA 6..291 20..304 1188 77 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10768-PA 308 GM10768-PA 15..287 12..284 1375 96.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17776-PA 183 GD17776-PA 15..178 12..175 869 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23950-PA 303 GJ23950-PA 1..261 18..278 1078 75.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19194-PA 225 GK19194-PA 1..219 84..297 801 70.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14944-PA 134 GE14944-PA 1..134 171..304 574 80.6 Plus
Dyak\GE25427-PA 134 GE25427-PA 1..134 171..304 574 80.6 Plus