Clone IP09953 Report

Search the DGRC for IP09953

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:99
Well:53
Vector:pOT2
Associated Gene/TranscriptCG18449-RA
Protein status:IP09953.pep: gold
Preliminary Size:769
Sequenced Size:784

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18449 2005-01-01 Successful iPCR screen
CG18449 2008-04-29 Release 5.5 accounting
CG18449 2008-08-15 Release 5.9 accounting
CG18449 2008-12-18 5.12 accounting

Clone Sequence Records

IP09953.complete Sequence

784 bp assembled on 2006-11-09

GenBank Submission: BT023234

> IP09953.complete
TTCCGGTCTACAAAATTTAATATATGTTTATTATCTCTTCTGAAAACTTG
TAGTTTACTTAAAAACTAAAAAAAATCAAAATCATAAATCAAATCAAAAT
AAATCATATTGAAACACAATGAATTCGACAAAAGCTTTGTTAAGCAGCAG
GATAGTGGCCTTCGGACTTGAAAATCTGGTGACGCGTCGCGGAATGAAGC
AGTTACGTTTGGATGAAATTCACTACAAACTCAACTCCAATCAAGAGCGA
AACCACCAGAGAACTTGGCCACAATCACAGATGCAGCCGCAGATTGAGGA
GCGCATGGATGACACCAAATACAGGCCAGGTCGTTGGACGGAGCGGAAAT
ATCAGGCCACCTGGCGGGAAGCTGTCATCCCAAATGAGGAAGCCCATAAG
GAGGCGAAGGACTCGCGTTCACAGGAGGAGCGACCCCACATTCGTGAACT
CCGCCGAACTACCGACCCCAATAGGCGCCTCCAGAGGATCGCAATGCCTG
CTAAACAATTCATCTCGCAGTTTATCTCCACCCAAAGCAAAAACAAAAGG
CGTTACGTAGAAGCTGCATCAGATCGAATGGCGTTTGATGGATACTAGCT
GATACACGGCTTGTTTTCGCTATCAACTTCGATCTTAACTATTGTGGATT
TAATTTGCCTTTGCCTCATATGTTAGATGTCGAGTTTTAGTTTAAAGTCG
AATAGGTTTTCTGTGTTGTATAACAGTAGAAACAAAATCAAATTAAATTT
GCAATCTTTAAGATAAAAAAAAAAAAAAAAAAAA

IP09953.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG18449-RA 767 CG18449-RA 2..767 1..766 3830 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4254689..4255452 764..1 3820 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:00:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8367161..8367926 766..1 3830 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8368360..8369125 766..1 3830 100 Minus
Blast to na_te.dros performed 2019-03-15 20:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 7020..7167 10..154 113 57.2 Plus

IP09953.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:09:10 Download gff for IP09953.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4254689..4255452 1..764 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:44:19 Download gff for IP09953.complete
Subject Subject Range Query Range Percent Splice Strand
CG18449-RA 1..480 119..598 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:05:01 Download gff for IP09953.complete
Subject Subject Range Query Range Percent Splice Strand
CG18449-RA 1..480 119..598 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:48:49 Download gff for IP09953.complete
Subject Subject Range Query Range Percent Splice Strand
CG18449-RA 1..480 119..598 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:08:22 Download gff for IP09953.complete
Subject Subject Range Query Range Percent Splice Strand
CG18449-RA 1..480 119..598 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:29:37 Download gff for IP09953.complete
Subject Subject Range Query Range Percent Splice Strand
CG18449-RA 1..480 119..598 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:30:41 Download gff for IP09953.complete
Subject Subject Range Query Range Percent Splice Strand
CG18449-RA 2..765 1..764 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:05:01 Download gff for IP09953.complete
Subject Subject Range Query Range Percent Splice Strand
CG18449-RA 2..765 1..764 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:49 Download gff for IP09953.complete
Subject Subject Range Query Range Percent Splice Strand
CG18449-RA 2..765 1..764 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:08:23 Download gff for IP09953.complete
Subject Subject Range Query Range Percent Splice Strand
CG18449-RA 2..765 1..764 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:29:37 Download gff for IP09953.complete
Subject Subject Range Query Range Percent Splice Strand
CG18449-RA 2..765 1..764 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:09:10 Download gff for IP09953.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8367163..8367926 1..764 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:09:10 Download gff for IP09953.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8367163..8367926 1..764 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:09:10 Download gff for IP09953.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8367163..8367926 1..764 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:49 Download gff for IP09953.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4254668..4255431 1..764 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:38:49 Download gff for IP09953.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8368362..8369125 1..764 100   Minus

IP09953.hyp Sequence

Translation from 118 to 597

> IP09953.hyp
MNSTKALLSSRIVAFGLENLVTRRGMKQLRLDEIHYKLNSNQERNHQRTW
PQSQMQPQIEERMDDTKYRPGRWTERKYQATWREAVIPNEEAHKEAKDSR
SQEERPHIRELRRTTDPNRRLQRIAMPAKQFISQFISTQSKNKRRYVEAA
SDRMAFDGY*

IP09953.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:23:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG18449-PA 159 CG18449-PA 1..159 1..159 829 100 Plus

IP09953.pep Sequence

Translation from 118 to 597

> IP09953.pep
MNSTKALLSSRIVAFGLENLVTRRGMKQLRLDEIHYKLNSNQERNHQRTW
PQSQMQPQIEERMDDTKYRPGRWTERKYQATWREAVIPNEEAHKEAKDSR
SQEERPHIRELRRTTDPNRRLQRIAMPAKQFISQFISTQSKNKRRYVEAA
SDRMAFDGY*

IP09953.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10649-PA 152 GG10649-PA 1..149 1..159 557 69.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG18449-PA 159 CG18449-PA 1..159 1..159 829 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20694-PA 159 GM20694-PA 1..159 1..159 763 89.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15277-PA 159 GD15277-PA 1..159 1..159 762 89.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23080-PA 156 GE23080-PA 1..153 1..159 587 72.2 Plus