Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
IP09953.complete Sequence
784 bp assembled on 2006-11-09
GenBank Submission: BT023234
> IP09953.complete
TTCCGGTCTACAAAATTTAATATATGTTTATTATCTCTTCTGAAAACTTG
TAGTTTACTTAAAAACTAAAAAAAATCAAAATCATAAATCAAATCAAAAT
AAATCATATTGAAACACAATGAATTCGACAAAAGCTTTGTTAAGCAGCAG
GATAGTGGCCTTCGGACTTGAAAATCTGGTGACGCGTCGCGGAATGAAGC
AGTTACGTTTGGATGAAATTCACTACAAACTCAACTCCAATCAAGAGCGA
AACCACCAGAGAACTTGGCCACAATCACAGATGCAGCCGCAGATTGAGGA
GCGCATGGATGACACCAAATACAGGCCAGGTCGTTGGACGGAGCGGAAAT
ATCAGGCCACCTGGCGGGAAGCTGTCATCCCAAATGAGGAAGCCCATAAG
GAGGCGAAGGACTCGCGTTCACAGGAGGAGCGACCCCACATTCGTGAACT
CCGCCGAACTACCGACCCCAATAGGCGCCTCCAGAGGATCGCAATGCCTG
CTAAACAATTCATCTCGCAGTTTATCTCCACCCAAAGCAAAAACAAAAGG
CGTTACGTAGAAGCTGCATCAGATCGAATGGCGTTTGATGGATACTAGCT
GATACACGGCTTGTTTTCGCTATCAACTTCGATCTTAACTATTGTGGATT
TAATTTGCCTTTGCCTCATATGTTAGATGTCGAGTTTTAGTTTAAAGTCG
AATAGGTTTTCTGTGTTGTATAACAGTAGAAACAAAATCAAATTAAATTT
GCAATCTTTAAGATAAAAAAAAAAAAAAAAAAAA
IP09953.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:05:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18449-RA | 767 | CG18449-RA | 2..767 | 1..766 | 3830 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:08:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 4254689..4255452 | 764..1 | 3820 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:00:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:08:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8367161..8367926 | 766..1 | 3830 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:59:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 8368360..8369125 | 766..1 | 3830 | 100 | Minus |
Blast to na_te.dros performed 2019-03-15 20:08:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 7020..7167 | 10..154 | 113 | 57.2 | Plus |
IP09953.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:09:10 Download gff for
IP09953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 4254689..4255452 | 1..764 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:44:19 Download gff for
IP09953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18449-RA | 1..480 | 119..598 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:05:01 Download gff for
IP09953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18449-RA | 1..480 | 119..598 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:48:49 Download gff for
IP09953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18449-RA | 1..480 | 119..598 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:08:22 Download gff for
IP09953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18449-RA | 1..480 | 119..598 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:29:37 Download gff for
IP09953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18449-RA | 1..480 | 119..598 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:30:41 Download gff for
IP09953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18449-RA | 2..765 | 1..764 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:05:01 Download gff for
IP09953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18449-RA | 2..765 | 1..764 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:49 Download gff for
IP09953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18449-RA | 2..765 | 1..764 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:08:23 Download gff for
IP09953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18449-RA | 2..765 | 1..764 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:29:37 Download gff for
IP09953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18449-RA | 2..765 | 1..764 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:09:10 Download gff for
IP09953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8367163..8367926 | 1..764 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:09:10 Download gff for
IP09953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8367163..8367926 | 1..764 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:09:10 Download gff for
IP09953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8367163..8367926 | 1..764 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:49 Download gff for
IP09953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4254668..4255431 | 1..764 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:38:49 Download gff for
IP09953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8368362..8369125 | 1..764 | 100 | | Minus |
IP09953.hyp Sequence
Translation from 118 to 597
> IP09953.hyp
MNSTKALLSSRIVAFGLENLVTRRGMKQLRLDEIHYKLNSNQERNHQRTW
PQSQMQPQIEERMDDTKYRPGRWTERKYQATWREAVIPNEEAHKEAKDSR
SQEERPHIRELRRTTDPNRRLQRIAMPAKQFISQFISTQSKNKRRYVEAA
SDRMAFDGY*
IP09953.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:23:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18449-PA | 159 | CG18449-PA | 1..159 | 1..159 | 829 | 100 | Plus |
IP09953.pep Sequence
Translation from 118 to 597
> IP09953.pep
MNSTKALLSSRIVAFGLENLVTRRGMKQLRLDEIHYKLNSNQERNHQRTW
PQSQMQPQIEERMDDTKYRPGRWTERKYQATWREAVIPNEEAHKEAKDSR
SQEERPHIRELRRTTDPNRRLQRIAMPAKQFISQFISTQSKNKRRYVEAA
SDRMAFDGY*
IP09953.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:51:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG10649-PA | 152 | GG10649-PA | 1..149 | 1..159 | 557 | 69.8 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18449-PA | 159 | CG18449-PA | 1..159 | 1..159 | 829 | 100 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:51:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM20694-PA | 159 | GM20694-PA | 1..159 | 1..159 | 763 | 89.3 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:51:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD15277-PA | 159 | GD15277-PA | 1..159 | 1..159 | 762 | 89.3 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:51:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE23080-PA | 156 | GE23080-PA | 1..153 | 1..159 | 587 | 72.2 | Plus |