Clone IP09961 Report

Search the DGRC for IP09961

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:99
Well:61
Vector:pOT2
Associated Gene/TranscriptCG42559-RA
Protein status:IP09961.pep: gold
Preliminary Size:842
Sequenced Size:934

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30182 2005-01-01 Successful iPCR screen
CG30182 2008-04-29 Release 5.5 accounting
CG30182 2008-08-15 Release 5.9 accounting
CG30182 2008-12-18 5.12 accounting

Clone Sequence Records

IP09961.complete Sequence

934 bp (934 high quality bases) assembled on 2005-03-06

GenBank Submission: BT023238

> IP09961.complete
CCACATTGTACTTTCAGACTTGTAAAATGTATTTCTGCCACACTGATTTC
GTTCTATCCTAAACTTAAGAAGCCATGTTTCCTGTTGCACGAATCTTAGG
CTCGGCATCGTGCAACAGGCTATTTCAACCTCAGGTGCTATGTCAAGAAA
GAGTTTGTTGGCCTTCCAATGAGTTGCACAGAAATTTACCAAGGCATAGA
AACTTTTACCACGGTAGAAACATTTTCCACCCAAGGTCGAATAATAATTT
AAACGAATTTCCTGCTAAACGTCAATTCACTGACAAATTTTCCGAGAAGG
GCAGAGGCGAGGAACTTAACTATGTTCTCAAACTTGCCTCAGAGCAATTT
ATGAAGATAAAAAAGAACAGGGTTAAAGAAATCGCCAATGATATCGTCAA
ATTGAAAGAGGAGATCAAGATTTTGGAATCCAAAACTAGCCACAAATCAA
GGAAACACAAGGAGAATCTGCTAAAGGAATTGAAAGCTCTGAAGGATTTG
TTGGAGCAATTCAAAAAGAGTCTCGAAAAATGACCTATCAAACGGATACA
ATGCTGAAGTTGGTCGAAAAGCTTTTCCAACTGTTGCGACCCAGGATGTG
TCAGTTTTCACAATCCAACAAGAACATATCCAAGCATTTGTTCGAAAAAG
CCAGGGCGGAGGAGAACATACATTTCCTTAAACTGGTTGGTTTGTGATCT
CAAAAAACGAAAGTAATCTATTTAAATTTAATTGCAAATTTACCCAGCAA
CGGGAACAGCTGAAGTCGTTGCGAGAAAAGATTCTCAGCCAGAAGAACGA
AGTCACAACAAAGATCATCAAGGTGGATAAGCAGATACAATCGTTGGAAA
AAACCAAGACCGAAGGCTCACAGATGAACCATGAACAAAATTAATAAAGT
GTAGCTGAAACATTTGAAAAAAAAAAAAAAAAAA

IP09961.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:47:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG42559-RC 940 CG42559-RC 27..940 1..914 4570 100 Plus
CG42560-RA 878 CG42560-RA 27..711 1..685 3425 100 Plus
CG42559-RB 937 CG42559-RB 27..648 1..622 3110 100 Plus
CG42559-RB 937 CG42559-RB 770..937 747..914 840 100 Plus
CG42560-RA 878 CG42560-RA 711..878 747..914 840 100 Plus
CG42559-RB 937 CG42559-RB 707..770 622..685 320 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:16:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19485762..19486056 916..622 1415 98.6 Minus
chr2R 21145070 chr2R 19486302..19486502 536..336 975 99 Minus
chr2R 21145070 chr2R 19486852..19487008 157..1 785 100 Minus
chr2R 21145070 chr2R 19486686..19486797 268..157 560 100 Minus
chr2R 21145070 chr2R 19486115..19486193 622..544 395 100 Minus
chr2R 21145070 chr2R 19486560..19486627 336..269 340 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:00:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23599526..23599820 916..622 1475 100 Minus
2R 25286936 2R 23600046..23600255 545..336 1050 100 Minus
2R 25286936 2R 23600605..23600761 157..1 785 100 Minus
2R 25286936 2R 23600439..23600550 268..157 560 100 Minus
2R 25286936 2R 23599879..23599957 622..544 395 100 Minus
2R 25286936 2R 23600313..23600380 336..269 340 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23600725..23601019 916..622 1475 100 Minus
2R 25260384 2R 23601245..23601454 545..336 1050 100 Minus
2R 25260384 2R 23601804..23601960 157..1 785 100 Minus
2R 25260384 2R 23601638..23601749 268..157 560 100 Minus
2R 25260384 2R 23601078..23601156 622..544 395 100 Minus
2R 25260384 2R 23601512..23601579 336..269 340 100 Minus
Blast to na_te.dros performed on 2019-03-16 10:16:57 has no hits.

IP09961.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:17:48 Download gff for IP09961.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19485762..19486056 622..916 98 <- Minus
chr2R 19486116..19486192 545..621 100 <- Minus
chr2R 19486292..19486502 336..544 97 <- Minus
chr2R 19486561..19486627 269..335 100 <- Minus
chr2R 19486686..19486796 158..268 100 <- Minus
chr2R 19486852..19487008 1..157 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:44:21 Download gff for IP09961.complete
Subject Subject Range Query Range Percent Splice Strand
CG30182-RA 1..603 75..685 96 == Plus
CG30182-RA 604..750 748..894 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:17:28 Download gff for IP09961.complete
Subject Subject Range Query Range Percent Splice Strand
CG42559-RC 1..459 75..533 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:59:23 Download gff for IP09961.complete
Subject Subject Range Query Range Percent Splice Strand
CG42559-RA 1..459 75..533 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:01:48 Download gff for IP09961.complete
Subject Subject Range Query Range Percent Splice Strand
CG30182-RA 1..603 75..685 96 == Plus
CG30182-RA 604..750 748..894 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:03:22 Download gff for IP09961.complete
Subject Subject Range Query Range Percent Splice Strand
CG42559-RA 1..459 75..533 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:17:00 Download gff for IP09961.complete
Subject Subject Range Query Range Percent Splice Strand
CG30182-RA 1..670 8..685 96 == Plus
CG30182-RA 671..839 748..916 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:17:28 Download gff for IP09961.complete
Subject Subject Range Query Range Percent Splice Strand
CG42559-RC 27..940 1..914 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:23 Download gff for IP09961.complete
Subject Subject Range Query Range Percent Splice Strand
CG42559-RC 27..942 1..916 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:01:48 Download gff for IP09961.complete
Subject Subject Range Query Range Percent Splice Strand
CG30182-RA 1..670 8..685 96 == Plus
CG30182-RA 671..839 748..916 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:03:22 Download gff for IP09961.complete
Subject Subject Range Query Range Percent Splice Strand
CG42559-RC 27..942 1..916 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:17:48 Download gff for IP09961.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23600439..23600549 158..268 100 <- Minus
2R 23600605..23600761 1..157 100   Minus
2R 23599526..23599820 622..916 100 <- Minus
2R 23599880..23599956 545..621 100 <- Minus
2R 23600047..23600255 336..544 100 <- Minus
2R 23600314..23600380 269..335 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:17:48 Download gff for IP09961.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23600439..23600549 158..268 100 <- Minus
2R 23600605..23600761 1..157 100   Minus
2R 23599526..23599820 622..916 100 <- Minus
2R 23599880..23599956 545..621 100 <- Minus
2R 23600047..23600255 336..544 100 <- Minus
2R 23600314..23600380 269..335 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:17:48 Download gff for IP09961.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23600439..23600549 158..268 100 <- Minus
2R 23600605..23600761 1..157 100   Minus
2R 23599526..23599820 622..916 100 <- Minus
2R 23599880..23599956 545..621 100 <- Minus
2R 23600047..23600255 336..544 100 <- Minus
2R 23600314..23600380 269..335 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:23 Download gff for IP09961.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19487049..19487343 622..916 100 <- Minus
arm_2R 19487403..19487479 545..621 100 <- Minus
arm_2R 19487570..19487778 336..544 100 <- Minus
arm_2R 19487837..19487903 269..335 100 <- Minus
arm_2R 19487962..19488072 158..268 100 <- Minus
arm_2R 19488128..19488284 1..157 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:37:34 Download gff for IP09961.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23600743..23601037 622..916 100 <- Minus
2R 23601097..23601173 545..621 100 <- Minus
2R 23601264..23601472 336..544 100 <- Minus
2R 23601531..23601597 269..335 100 <- Minus
2R 23601656..23601766 158..268 100 <- Minus
2R 23601822..23601978 1..157 100   Minus

IP09961.pep Sequence

Translation from 74 to 532

> IP09961.pep
MFPVARILGSASCNRLFQPQVLCQERVCWPSNELHRNLPRHRNFYHGRNI
FHPRSNNNLNEFPAKRQFTDKFSEKGRGEELNYVLKLASEQFMKIKKNRV
KEIANDIVKLKEEIKILESKTSHKSRKHKENLLKELKALKDLLEQFKKSL
EK*

IP09961.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11834-PA 179 GF11834-PA 3..85 69..151 247 62.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20016-PA 115 GG20016-PA 1..115 1..152 376 56.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG42559-PC 152 CG42559-PC 1..152 1..152 794 100 Plus
CG42559-PB 152 CG42559-PB 1..152 1..152 794 100 Plus
CG42559-PA 152 CG42559-PA 1..152 1..152 794 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15528-PA 254 GM15528-PA 1..142 1..142 683 91.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25032-PA 254 GD25032-PA 1..142 1..142 668 90.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11552-PA 143 GE11552-PA 1..143 1..152 505 69.7 Plus

IP09961.hyp Sequence

Translation from 74 to 532

> IP09961.hyp
MFPVARILGSASCNRLFQPQVLCQERVCWPSNELHRNLPRHRNFYHGRNI
FHPRSNNNLNEFPAKRQFTDKFSEKGRGEELNYVLKLASEQFMKIKKNRV
KEIANDIVKLKEEIKILESKTSHKSRKHKENLLKELKALKDLLEQFKKSL
EK*

IP09961.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG42559-PC 152 CG42559-PC 1..152 1..152 794 100 Plus
CG42559-PB 152 CG42559-PB 1..152 1..152 794 100 Plus
CG42559-PA 152 CG42559-PA 1..152 1..152 794 100 Plus