IP09961.complete Sequence
934 bp (934 high quality bases) assembled on 2005-03-06
GenBank Submission: BT023238
> IP09961.complete
CCACATTGTACTTTCAGACTTGTAAAATGTATTTCTGCCACACTGATTTC
GTTCTATCCTAAACTTAAGAAGCCATGTTTCCTGTTGCACGAATCTTAGG
CTCGGCATCGTGCAACAGGCTATTTCAACCTCAGGTGCTATGTCAAGAAA
GAGTTTGTTGGCCTTCCAATGAGTTGCACAGAAATTTACCAAGGCATAGA
AACTTTTACCACGGTAGAAACATTTTCCACCCAAGGTCGAATAATAATTT
AAACGAATTTCCTGCTAAACGTCAATTCACTGACAAATTTTCCGAGAAGG
GCAGAGGCGAGGAACTTAACTATGTTCTCAAACTTGCCTCAGAGCAATTT
ATGAAGATAAAAAAGAACAGGGTTAAAGAAATCGCCAATGATATCGTCAA
ATTGAAAGAGGAGATCAAGATTTTGGAATCCAAAACTAGCCACAAATCAA
GGAAACACAAGGAGAATCTGCTAAAGGAATTGAAAGCTCTGAAGGATTTG
TTGGAGCAATTCAAAAAGAGTCTCGAAAAATGACCTATCAAACGGATACA
ATGCTGAAGTTGGTCGAAAAGCTTTTCCAACTGTTGCGACCCAGGATGTG
TCAGTTTTCACAATCCAACAAGAACATATCCAAGCATTTGTTCGAAAAAG
CCAGGGCGGAGGAGAACATACATTTCCTTAAACTGGTTGGTTTGTGATCT
CAAAAAACGAAAGTAATCTATTTAAATTTAATTGCAAATTTACCCAGCAA
CGGGAACAGCTGAAGTCGTTGCGAGAAAAGATTCTCAGCCAGAAGAACGA
AGTCACAACAAAGATCATCAAGGTGGATAAGCAGATACAATCGTTGGAAA
AAACCAAGACCGAAGGCTCACAGATGAACCATGAACAAAATTAATAAAGT
GTAGCTGAAACATTTGAAAAAAAAAAAAAAAAAA
IP09961.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:47:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42559-RC | 940 | CG42559-RC | 27..940 | 1..914 | 4570 | 100 | Plus |
CG42560-RA | 878 | CG42560-RA | 27..711 | 1..685 | 3425 | 100 | Plus |
CG42559-RB | 937 | CG42559-RB | 27..648 | 1..622 | 3110 | 100 | Plus |
CG42559-RB | 937 | CG42559-RB | 770..937 | 747..914 | 840 | 100 | Plus |
CG42560-RA | 878 | CG42560-RA | 711..878 | 747..914 | 840 | 100 | Plus |
CG42559-RB | 937 | CG42559-RB | 707..770 | 622..685 | 320 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:16:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 19485762..19486056 | 916..622 | 1415 | 98.6 | Minus |
chr2R | 21145070 | chr2R | 19486302..19486502 | 536..336 | 975 | 99 | Minus |
chr2R | 21145070 | chr2R | 19486852..19487008 | 157..1 | 785 | 100 | Minus |
chr2R | 21145070 | chr2R | 19486686..19486797 | 268..157 | 560 | 100 | Minus |
chr2R | 21145070 | chr2R | 19486115..19486193 | 622..544 | 395 | 100 | Minus |
chr2R | 21145070 | chr2R | 19486560..19486627 | 336..269 | 340 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:00:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:16:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23599526..23599820 | 916..622 | 1475 | 100 | Minus |
2R | 25286936 | 2R | 23600046..23600255 | 545..336 | 1050 | 100 | Minus |
2R | 25286936 | 2R | 23600605..23600761 | 157..1 | 785 | 100 | Minus |
2R | 25286936 | 2R | 23600439..23600550 | 268..157 | 560 | 100 | Minus |
2R | 25286936 | 2R | 23599879..23599957 | 622..544 | 395 | 100 | Minus |
2R | 25286936 | 2R | 23600313..23600380 | 336..269 | 340 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:37:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 23600725..23601019 | 916..622 | 1475 | 100 | Minus |
2R | 25260384 | 2R | 23601245..23601454 | 545..336 | 1050 | 100 | Minus |
2R | 25260384 | 2R | 23601804..23601960 | 157..1 | 785 | 100 | Minus |
2R | 25260384 | 2R | 23601638..23601749 | 268..157 | 560 | 100 | Minus |
2R | 25260384 | 2R | 23601078..23601156 | 622..544 | 395 | 100 | Minus |
2R | 25260384 | 2R | 23601512..23601579 | 336..269 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-16 10:16:57 has no hits.
IP09961.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:17:48 Download gff for
IP09961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 19485762..19486056 | 622..916 | 98 | <- | Minus |
chr2R | 19486116..19486192 | 545..621 | 100 | <- | Minus |
chr2R | 19486292..19486502 | 336..544 | 97 | <- | Minus |
chr2R | 19486561..19486627 | 269..335 | 100 | <- | Minus |
chr2R | 19486686..19486796 | 158..268 | 100 | <- | Minus |
chr2R | 19486852..19487008 | 1..157 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:44:21 Download gff for
IP09961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30182-RA | 1..603 | 75..685 | 96 | == | Plus |
CG30182-RA | 604..750 | 748..894 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:17:28 Download gff for
IP09961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42559-RC | 1..459 | 75..533 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:59:23 Download gff for
IP09961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42559-RA | 1..459 | 75..533 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:01:48 Download gff for
IP09961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30182-RA | 1..603 | 75..685 | 96 | == | Plus |
CG30182-RA | 604..750 | 748..894 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:03:22 Download gff for
IP09961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42559-RA | 1..459 | 75..533 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:17:00 Download gff for
IP09961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30182-RA | 1..670 | 8..685 | 96 | == | Plus |
CG30182-RA | 671..839 | 748..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:17:28 Download gff for
IP09961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42559-RC | 27..940 | 1..914 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:23 Download gff for
IP09961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42559-RC | 27..942 | 1..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:01:48 Download gff for
IP09961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30182-RA | 1..670 | 8..685 | 96 | == | Plus |
CG30182-RA | 671..839 | 748..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:03:22 Download gff for
IP09961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42559-RC | 27..942 | 1..916 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:17:48 Download gff for
IP09961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23600439..23600549 | 158..268 | 100 | <- | Minus |
2R | 23600605..23600761 | 1..157 | 100 | | Minus |
2R | 23599526..23599820 | 622..916 | 100 | <- | Minus |
2R | 23599880..23599956 | 545..621 | 100 | <- | Minus |
2R | 23600047..23600255 | 336..544 | 100 | <- | Minus |
2R | 23600314..23600380 | 269..335 | 100 | <- | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:17:48 Download gff for
IP09961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23600439..23600549 | 158..268 | 100 | <- | Minus |
2R | 23600605..23600761 | 1..157 | 100 | | Minus |
2R | 23599526..23599820 | 622..916 | 100 | <- | Minus |
2R | 23599880..23599956 | 545..621 | 100 | <- | Minus |
2R | 23600047..23600255 | 336..544 | 100 | <- | Minus |
2R | 23600314..23600380 | 269..335 | 100 | <- | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:17:48 Download gff for
IP09961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23600439..23600549 | 158..268 | 100 | <- | Minus |
2R | 23600605..23600761 | 1..157 | 100 | | Minus |
2R | 23599526..23599820 | 622..916 | 100 | <- | Minus |
2R | 23599880..23599956 | 545..621 | 100 | <- | Minus |
2R | 23600047..23600255 | 336..544 | 100 | <- | Minus |
2R | 23600314..23600380 | 269..335 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:23 Download gff for
IP09961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19487049..19487343 | 622..916 | 100 | <- | Minus |
arm_2R | 19487403..19487479 | 545..621 | 100 | <- | Minus |
arm_2R | 19487570..19487778 | 336..544 | 100 | <- | Minus |
arm_2R | 19487837..19487903 | 269..335 | 100 | <- | Minus |
arm_2R | 19487962..19488072 | 158..268 | 100 | <- | Minus |
arm_2R | 19488128..19488284 | 1..157 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:37:34 Download gff for
IP09961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23600743..23601037 | 622..916 | 100 | <- | Minus |
2R | 23601097..23601173 | 545..621 | 100 | <- | Minus |
2R | 23601264..23601472 | 336..544 | 100 | <- | Minus |
2R | 23601531..23601597 | 269..335 | 100 | <- | Minus |
2R | 23601656..23601766 | 158..268 | 100 | <- | Minus |
2R | 23601822..23601978 | 1..157 | 100 | | Minus |
IP09961.pep Sequence
Translation from 74 to 532
> IP09961.pep
MFPVARILGSASCNRLFQPQVLCQERVCWPSNELHRNLPRHRNFYHGRNI
FHPRSNNNLNEFPAKRQFTDKFSEKGRGEELNYVLKLASEQFMKIKKNRV
KEIANDIVKLKEEIKILESKTSHKSRKHKENLLKELKALKDLLEQFKKSL
EK*
IP09961.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:22:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF11834-PA | 179 | GF11834-PA | 3..85 | 69..151 | 247 | 62.7 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:22:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG20016-PA | 115 | GG20016-PA | 1..115 | 1..152 | 376 | 56.6 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42559-PC | 152 | CG42559-PC | 1..152 | 1..152 | 794 | 100 | Plus |
CG42559-PB | 152 | CG42559-PB | 1..152 | 1..152 | 794 | 100 | Plus |
CG42559-PA | 152 | CG42559-PA | 1..152 | 1..152 | 794 | 100 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:22:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM15528-PA | 254 | GM15528-PA | 1..142 | 1..142 | 683 | 91.5 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:22:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD25032-PA | 254 | GD25032-PA | 1..142 | 1..142 | 668 | 90.1 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:22:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE11552-PA | 143 | GE11552-PA | 1..143 | 1..152 | 505 | 69.7 | Plus |
IP09961.hyp Sequence
Translation from 74 to 532
> IP09961.hyp
MFPVARILGSASCNRLFQPQVLCQERVCWPSNELHRNLPRHRNFYHGRNI
FHPRSNNNLNEFPAKRQFTDKFSEKGRGEELNYVLKLASEQFMKIKKNRV
KEIANDIVKLKEEIKILESKTSHKSRKHKENLLKELKALKDLLEQFKKSL
EK*
IP09961.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:23:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42559-PC | 152 | CG42559-PC | 1..152 | 1..152 | 794 | 100 | Plus |
CG42559-PB | 152 | CG42559-PB | 1..152 | 1..152 | 794 | 100 | Plus |
CG42559-PA | 152 | CG42559-PA | 1..152 | 1..152 | 794 | 100 | Plus |