Clone IP10354 Report

Search the DGRC for IP10354

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:103
Well:54
Vector:pOT2
Associated Gene/TranscriptCG6628-RA
Protein status:IP10354.pep: gold
Preliminary Size:839
Sequenced Size:1106

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6628 2005-01-01 Successful iPCR screen
CG6628 2008-04-29 Release 5.5 accounting
CG6628 2008-08-15 Release 5.9 accounting
CG6628 2008-12-18 5.12 accounting

Clone Sequence Records

IP10354.complete Sequence

1106 bp (1106 high quality bases) assembled on 2005-02-26

GenBank Submission: BT023366

> IP10354.complete
AGCATGTCTACGGAATTGGTAGTGGCCCTTATGCTCTTTGGATTCCTGCA
GGTTGCATTCAGCCAGGACAATGCGACTGCTCCCCCAACGGACTATTGTC
AGAGTGGATTGTGCCCCTCTCTAAAAAAACACATTGCCTGCAAGAACAAA
GGAGAGTTGGGCAAACAGTGTTCTCCCGACGCCCATTTGGTCAATCTCAC
TGGCCTGCAGGACCTGATCCTGGGTGAACACAATGCATTGCGAAATGTCC
TTGCTTCGGGAAAAATCATCAATTTACCTAAGCCCGATCGCATGGCCACA
CTGCAGTGGCATTCAGAACTGGCCGATCTGGCCACACTGAATGTGAAGCA
GTGTGTTCTGCAGCACGATTCTTGTCACAACACTCCAGATTTCCATAACT
CTGGTCAGAACTTGGCTTTGGTCAACATAACCCTGCTACCTGAAGACGGA
AATCACACCGACGAGTGCCTTGTTAAGGAGTCTATTGGAGGCTGGTGGAA
TCAGAGTATCAATATCACAAAAGAGCAATTGCAGCGTTTTCCCAAAGGAA
AATTGGGAGATTCCATTCGCAATTTTGCCGTCATGGCCCGTGACAACAAC
ACCCATGTGGGATGTGCCGCCTTGAGATTCGAGAAGCCCGCAGGACATCC
GCTATTCCTTTTGGCCTGCAACTATGCCAGCAATTATGTTCCCGACTGGC
CCATCTACAAGGAGAAAGCCATTGGCTGTCAGTCCGGTTCCGACCTCAAA
TATCCATCGCTTTGCAAGGCTGGTGAGGAATACCAGGATCTTATCGGGCA
GCAGGGCTCCAAGGGGAAGAGATTTTGGACGCTGTAGGAGTGCCAAAAAT
AACTCCTAGCTAACGGATTGGAGTGGGTGGCAGGCGCACTTACAGTCTAT
TTAACATGTTGATTTGTGTCGCAGTGCCTGGCGGTCATATATCATCTCAC
AGCCGCATTAGCATTAGCACAGACACCTGGAGAGACAGTGATGCTGAATT
CTAGCTATATATATAAAGAATACGTGAAAAATGATAATATTAAACATGAG
AATTCAATGAGAATATAGACAATATGAATATAAATTTATAAAAGACAAAA
AAAAAA

IP10354.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6628-RA 1103 CG6628-RA 5..1102 1..1098 5490 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 10157577..10158101 1096..561 2345 96.3 Minus
chr3L 24539361 chr3L 10158161..10158567 560..154 1960 98.8 Minus
chr3L 24539361 chr3L 10158628..10158781 154..1 740 98.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:01:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:42:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10165807..10166344 1098..561 2690 100 Minus
3L 28110227 3L 10166403..10166809 560..154 2035 100 Minus
3L 28110227 3L 10166870..10167023 154..1 770 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 10158907..10159444 1098..561 2690 100 Minus
3L 28103327 3L 10159503..10159909 560..154 2035 100 Minus
3L 28103327 3L 10159970..10160123 154..1 770 100 Minus
Blast to na_te.dros performed on 2019-03-16 09:42:59 has no hits.

IP10354.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:43:37 Download gff for IP10354.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 10157577..10158101 561..1096 96 <- Minus
chr3L 10158161..10158567 154..560 98 <- Minus
chr3L 10158629..10158781 1..153 98   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:11:12 Download gff for IP10354.complete
Subject Subject Range Query Range Percent Splice Strand
CG6628-RA 1..834 4..837 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:59:07 Download gff for IP10354.complete
Subject Subject Range Query Range Percent Splice Strand
CG6628-RA 1..834 4..837 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:55:52 Download gff for IP10354.complete
Subject Subject Range Query Range Percent Splice Strand
CG6628-RA 1..834 4..837 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:44:32 Download gff for IP10354.complete
Subject Subject Range Query Range Percent Splice Strand
CG6628-RA 1..834 4..837 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:05:02 Download gff for IP10354.complete
Subject Subject Range Query Range Percent Splice Strand
CG6628-RA 3..839 1..837 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:11:11 Download gff for IP10354.complete
Subject Subject Range Query Range Percent Splice Strand
CG6628-RA 1..1096 1..1096 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:07 Download gff for IP10354.complete
Subject Subject Range Query Range Percent Splice Strand
CG6628-RA 1..1096 1..1096 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:55:52 Download gff for IP10354.complete
Subject Subject Range Query Range Percent Splice Strand
CG6628-RA 3..839 1..837 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:44:32 Download gff for IP10354.complete
Subject Subject Range Query Range Percent Splice Strand
CG6628-RA 1..1096 1..1096 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:43:37 Download gff for IP10354.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10165809..10166344 561..1096 100 <- Minus
3L 10166403..10166809 154..560 100 <- Minus
3L 10166871..10167023 1..153 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:43:37 Download gff for IP10354.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10165809..10166344 561..1096 100 <- Minus
3L 10166403..10166809 154..560 100 <- Minus
3L 10166871..10167023 1..153 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:43:37 Download gff for IP10354.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10165809..10166344 561..1096 100 <- Minus
3L 10166403..10166809 154..560 100 <- Minus
3L 10166871..10167023 1..153 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:07 Download gff for IP10354.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10158909..10159444 561..1096 100 <- Minus
arm_3L 10159503..10159909 154..560 100 <- Minus
arm_3L 10159971..10160123 1..153 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:31:06 Download gff for IP10354.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10159503..10159909 154..560 100 <- Minus
3L 10159971..10160123 1..153 100   Minus
3L 10158909..10159444 561..1096 100 <- Minus

IP10354.hyp Sequence

Translation from 0 to 836

> IP10354.hyp
SMSTELVVALMLFGFLQVAFSQDNATAPPTDYCQSGLCPSLKKHIACKNK
GELGKQCSPDAHLVNLTGLQDLILGEHNALRNVLASGKIINLPKPDRMAT
LQWHSELADLATLNVKQCVLQHDSCHNTPDFHNSGQNLALVNITLLPEDG
NHTDECLVKESIGGWWNQSINITKEQLQRFPKGKLGDSIRNFAVMARDNN
THVGCAALRFEKPAGHPLFLLACNYASNYVPDWPIYKEKAIGCQSGSDLK
YPSLCKAGEEYQDLIGQQGSKGKRFWTL*

IP10354.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG6628-PA 277 CG6628-PA 1..277 2..278 1496 100 Plus
CG9822-PA 263 CG9822-PA 19..256 25..261 435 41.1 Plus
scpr-A-PA 264 CG5207-PA 16..254 25..263 394 38.5 Plus
scpr-B-PA 262 CG17210-PA 20..252 31..263 393 39.5 Plus
scpr-C-PB 262 CG5106-PB 20..252 31..263 390 39.1 Plus

IP10354.pep Sequence

Translation from 3 to 836

> IP10354.pep
MSTELVVALMLFGFLQVAFSQDNATAPPTDYCQSGLCPSLKKHIACKNKG
ELGKQCSPDAHLVNLTGLQDLILGEHNALRNVLASGKIINLPKPDRMATL
QWHSELADLATLNVKQCVLQHDSCHNTPDFHNSGQNLALVNITLLPEDGN
HTDECLVKESIGGWWNQSINITKEQLQRFPKGKLGDSIRNFAVMARDNNT
HVGCAALRFEKPAGHPLFLLACNYASNYVPDWPIYKEKAIGCQSGSDLKY
PSLCKAGEEYQDLIGQQGSKGKRFWTL*

IP10354.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23841-PA 293 GF23841-PA 1..293 1..277 899 57 Plus
Dana\GF21595-PA 256 GF21595-PA 22..254 29..260 443 43.3 Plus
Dana\GF12100-PA 263 GF12100-PA 7..257 10..261 442 38.3 Plus
Dana\GF10589-PA 266 GF10589-PA 28..265 27..260 427 41.9 Plus
Dana\GF21134-PA 248 GF21134-PA 9..247 14..254 398 38.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13982-PA 277 GG13982-PA 1..277 1..277 1341 89.5 Plus
Dere\GG20782-PA 263 GG20782-PA 19..256 24..260 433 41.1 Plus
Dere\GG18056-PA 264 GG18056-PA 16..254 24..262 393 36.9 Plus
Dere\GG17230-PA 262 GG17230-PA 20..252 30..262 388 37.8 Plus
Dere\GG17989-PA 262 GG17989-PA 20..252 30..262 387 37.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16558-PA 261 GH16558-PA 27..254 29..263 691 56.8 Plus
Dgri\GH17451-PA 253 GH17451-PA 1..251 1..260 439 38.5 Plus
Dgri\GH12213-PA 256 GH12213-PA 2..254 5..260 418 38 Plus
Dgri\GH21184-PA 264 GH21184-PA 22..260 24..260 416 36.8 Plus
Dgri\GH14937-PA 270 GH14937-PA 24..269 25..260 410 38.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG6628-PA 277 CG6628-PA 1..277 1..277 1496 100 Plus
CG9822-PA 263 CG9822-PA 19..256 24..260 435 41.1 Plus
scpr-A-PA 264 CG5207-PA 16..254 24..262 394 38.5 Plus
scpr-B-PA 262 CG17210-PA 20..252 30..262 393 39.5 Plus
scpr-C-PB 262 CG5106-PB 20..252 30..262 390 39.1 Plus
scpr-C-PA 262 CG5106-PA 20..252 30..262 390 39.1 Plus
Ag5r-PC 256 CG9538-PC 17..249 26..260 367 37.1 Plus
Ag5r-PB 256 CG9538-PB 17..249 26..260 367 37.1 Plus
Ag5r-PA 256 CG9538-PA 17..249 26..260 367 37.1 Plus
CG17974-PA 259 CG17974-PA 1..255 1..260 357 33.3 Plus
Ag5r2-PA 254 CG9540-PA 14..249 24..260 341 37 Plus
CG3640-PA 296 CG3640-PA 25..250 30..260 340 34.2 Plus
CG32679-PA 254 CG32679-PA 25..247 30..260 335 33 Plus
CG17575-PA 291 CG17575-PA 9..282 5..260 325 32.4 Plus
CG17575-PB 298 CG17575-PB 9..289 5..260 315 31.6 Plus
CG42564-PA 500 CG10284-PA 54..292 30..269 315 32.7 Plus
CG9400-PA 308 CG9400-PA 50..297 31..270 294 29.8 Plus
CG42780-PA 253 CG42780-PA 21..250 30..254 292 32.3 Plus
CG42780-PB 254 CG42780-PB 21..251 30..254 290 32.6 Plus
CG34002-PB 350 CG34002-PB 12..259 9..262 244 30.3 Plus
CG31296-PB 280 CG31296-PB 24..253 30..262 226 30.1 Plus
CG31296-PA 280 CG31296-PA 24..253 30..262 226 30.1 Plus
CG30486-PA 263 CG30486-PA 20..250 29..258 218 27.2 Plus
CG10651-PB 316 CG10651-PB 17..251 25..258 191 26.8 Plus
CG10651-PA 316 CG10651-PA 17..251 25..258 191 26.8 Plus
CG8072-PA 247 CG8072-PA 23..241 30..255 184 27.3 Plus
antr-PB 272 CG30488-PB 24..252 31..262 162 25.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13849-PA 233 GI13849-PA 15..222 51..263 572 53.7 Plus
Dmoj\GI11459-PA 274 GI11459-PA 16..273 14..260 433 39.4 Plus
Dmoj\GI15744-PA 256 GI15744-PA 22..254 29..260 429 41.2 Plus
Dmoj\GI20472-PA 267 GI20472-PA 30..260 31..260 415 39.3 Plus
Dmoj\GI15745-PA 257 GI15745-PA 1..249 10..260 411 37.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11762-PA 293 GL11762-PA 1..269 1..256 679 53.7 Plus
Dper\GL11847-PA 263 GL11847-PA 17..255 24..261 401 39.3 Plus
Dper\GL12570-PA 261 GL12570-PA 18..251 29..262 382 36.8 Plus
Dper\GL12032-PA 261 GL12032-PA 18..251 29..262 381 36.8 Plus
Dper\GL20409-PA 257 GL20409-PA 17..250 26..260 376 38.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19736-PA 286 GA19736-PA 39..285 30..274 759 59.3 Plus
Dpse\GA29233-PA 258 GA29233-PA 5..256 8..260 453 40.7 Plus
Dpse\GA28431-PA 253 GA28431-PA 22..252 30..261 413 38.7 Plus
Dpse\GA23481-PA 284 GA23481-PA 44..283 25..260 410 39.1 Plus
Dpse\GA22059-PA 263 GA22059-PA 17..255 24..261 401 39.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24819-PA 277 GM24819-PA 1..277 1..277 1431 95.7 Plus
Dsec\GM15726-PA 263 GM15726-PA 19..256 24..260 430 40.7 Plus
Dsec\GM26110-PA 262 GM26110-PA 20..252 30..262 390 39.1 Plus
Dsec\GM23927-PA 262 GM23927-PA 20..252 30..262 390 39.1 Plus
Dsec\GM12039-PA 256 GM12039-PA 17..250 26..261 372 36.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12870-PA 277 GD12870-PA 1..277 1..277 1429 95.7 Plus
Dsim\GD25203-PA 263 GD25203-PA 19..256 24..260 431 40.7 Plus
Dsim\GD18744-PA 277 GD18744-PA 7..252 15..260 396 38.2 Plus
Dsim\GD20669-PA 262 GD20669-PA 20..252 30..262 389 39.1 Plus
Dsim\GD25202-PA 258 GD25202-PA 4..254 9..260 367 34.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11713-PA 265 GJ11713-PA 18..257 16..263 716 55 Plus
Dvir\GJ10116-PA 253 GJ10116-PA 18..251 29..260 503 43.9 Plus
Dvir\GJ18605-PA 253 GJ18605-PA 2..251 5..260 438 38.7 Plus
Dvir\GJ13653-PA 271 GJ13653-PA 3..270 8..260 424 38.3 Plus
Dvir\GJ22322-PA 262 GJ22322-PA 19..255 25..260 420 39 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24087-PA 262 GK24087-PA 27..259 30..260 689 55.1 Plus
Dwil\GK20747-PA 259 GK20747-PA 9..255 9..258 436 39 Plus
Dwil\GK18435-PA 257 GK18435-PA 24..255 29..260 429 39.2 Plus
Dwil\GK13988-PA 262 GK13988-PA 16..261 26..271 412 38.2 Plus
Dwil\GK14741-PA 240 GK14741-PA 5..239 29..261 410 37 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20280-PA 277 GE20280-PA 1..277 1..277 1318 88.1 Plus
Dyak\GE13719-PA 263 GE13719-PA 19..256 24..260 436 41.5 Plus
Dyak\GE24631-PA 262 GE24631-PA 20..252 30..262 389 37.8 Plus
Dyak\GE26080-PA 262 GE26080-PA 20..252 30..262 388 37.8 Plus
Dyak\GE26087-PA 264 GE26087-PA 7..262 15..270 385 35.6 Plus