Clone IP10416 Report

Search the DGRC for IP10416

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:104
Well:16
Vector:pOT2
Associated Gene/TranscriptSpn53F-RB
Protein status:IP10416.pep: gold
Preliminary Size:1029
Sequenced Size:1337

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10956 2005-01-01 Successful iPCR screen
CG10956 2008-04-29 Release 5.5 accounting
CG10956 2008-08-15 Release 5.9 accounting
CG10956 2008-12-18 5.12 accounting

Clone Sequence Records

IP10416.complete Sequence

1337 bp (1337 high quality bases) assembled on 2005-03-24

GenBank Submission: BT023394

> IP10416.complete
ATTATAAATAATGTACGTGCTACTGCTAATCCTTTTAGGAATCTCACGCT
ACAGGGCTCAGAAAAATTCACAATTGCCAGATGAACTTTACGCAGCCATC
GTGAACAGCTTTTCGAACAGGAACATTATGTTCTCGACGGAGATGATACG
ATCCAGCATGCTGTTCATCTATGTGGGCGTGGAGGAAGATGAATCCGAGC
AAATTCGAAAGGCTATGCACTATCGAGGAACCCATCTATCTGAATACAAG
CCGAAAACACAGAAAATCTTTGCCATGAGTGTGAAGAAGGCACCTGTGGC
CAAGAGTCTTACCCGATTCTATGTACGTCAGAATATGAAAATGTCCACGG
AATATAGAGTTTTTATGCGGCATACAGAGGGAAGAGCTCGTAATATCGCC
TTTGCTCGTGAACAGCTAGACGAGGTTAATACATTTTACAGCCATGAAAT
GGGCGAGCAAATTGGGCAGGTGGTAAAAGAAAGCTGGTGGAAACCGAACA
GCCAAGGACTTCTCGTAAATGCCATTTTCTTCAATTTGAGTTGGGAGCGG
ACATTCAATCCGGAGGCCACATATCCCCGGGAGTTTCGAGTAAATGCCAC
AAAGAGCGTTATGATACCCATGATGCACGAGGATAGTAAGTTTGCATTTG
GCATCCTAGGGAATCTTAAAGCCACCGCCGTCCTGGTGCCTTTTTCCCAT
GGAGATCTCCGAATGCTCTTGATAAAGCCCGATCAGCCTGATGGACTTGC
TGCCTTGCAAATGAAGCTGCAGGCCATGAATATCTTAAGCGTTGCCAGGA
ACCTCACTATGATGGATGTGTTTGTGGGTATACCGAAATTTAAGATACAC
AGTGATCTAGAACTCTCTCCAGCTTTTGAAAAGATGGGCATCAAGGATAT
ATTTAAGCCCAGCAAGTCATTTTCAACGTTGCTTCACAGGAATACCAACT
TTCGGATTGACGGAGTTATTCATGTAGTCACCTTTGAGTTTCAGGAGCAG
GGCATTGGTACGCCAAGTACAGATGTTGGCAATGGTAGTTTGACACACAC
CTTTAATGGGGTGAAATATTTTTTGGCTACTCATCCATTTGCTTTTTATA
TCATAGACAACACATCAATATATTTTGCCGGTCATGTAACAAGCTTTTAG
AAATTAACAAAATTATTCCAAATTATTTGTGAGCAATACAGGTAATTTTT
ATATTCTCACCGTTTGTGGGGAAATATTATTGCAGAGCTATAATGTTTAT
GAATAATAAAGTAAATCGTTTCGTGTATTAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

IP10416.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10956-RB 1284 CG10956-RB 1..1284 1..1284 6420 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13010407..13011435 1029..1 4935 98.6 Minus
chr2R 21145070 chr2R 13010098..13010349 1279..1028 1230 99.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:01:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17123209..17124237 1029..1 5145 100 Minus
2R 25286936 2R 17122893..17123149 1284..1028 1285 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17124408..17125436 1029..1 5145 100 Minus
2R 25260384 2R 17124092..17124348 1284..1028 1285 100 Minus
Blast to na_te.dros performed on 2019-03-16 07:03:36 has no hits.

IP10416.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:04:19 Download gff for IP10416.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13010098..13010348 1029..1279 99 <- Minus
chr2R 13010408..13011435 1..1028 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:45:47 Download gff for IP10416.complete
Subject Subject Range Query Range Percent Splice Strand
CG10956-RB 1..1140 11..1150 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:07:23 Download gff for IP10416.complete
Subject Subject Range Query Range Percent Splice Strand
Spn53F-RB 1..1140 11..1150 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:29:39 Download gff for IP10416.complete
Subject Subject Range Query Range Percent Splice Strand
Spn53F-RB 1..1140 11..1150 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:52:20 Download gff for IP10416.complete
Subject Subject Range Query Range Percent Splice Strand
CG10956-RB 1..1140 11..1150 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:27:55 Download gff for IP10416.complete
Subject Subject Range Query Range Percent Splice Strand
Spn53F-RB 1..1140 11..1150 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:57:29 Download gff for IP10416.complete
Subject Subject Range Query Range Percent Splice Strand
CG10956-RB 1..1279 1..1279 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:07:23 Download gff for IP10416.complete
Subject Subject Range Query Range Percent Splice Strand
Spn53F-RB 1..1279 1..1279 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:39 Download gff for IP10416.complete
Subject Subject Range Query Range Percent Splice Strand
Spn53F-RB 1..1279 1..1279 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:52:21 Download gff for IP10416.complete
Subject Subject Range Query Range Percent Splice Strand
CG10956-RB 1..1279 1..1279 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:27:55 Download gff for IP10416.complete
Subject Subject Range Query Range Percent Splice Strand
Spn53F-RB 1..1279 1..1279 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:04:19 Download gff for IP10416.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17122898..17123148 1029..1279 100 <- Minus
2R 17123210..17124237 1..1028 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:04:19 Download gff for IP10416.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17122898..17123148 1029..1279 100 <- Minus
2R 17123210..17124237 1..1028 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:04:19 Download gff for IP10416.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17122898..17123148 1029..1279 100 <- Minus
2R 17123210..17124237 1..1028 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:39 Download gff for IP10416.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13010403..13010653 1029..1279 100 <- Minus
arm_2R 13010715..13011742 1..1028 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:27:15 Download gff for IP10416.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17124097..17124347 1029..1279 100 <- Minus
2R 17124409..17125436 1..1028 100   Minus

IP10416.pep Sequence

Translation from 10 to 1149

> IP10416.pep
MYVLLLILLGISRYRAQKNSQLPDELYAAIVNSFSNRNIMFSTEMIRSSM
LFIYVGVEEDESEQIRKAMHYRGTHLSEYKPKTQKIFAMSVKKAPVAKSL
TRFYVRQNMKMSTEYRVFMRHTEGRARNIAFAREQLDEVNTFYSHEMGEQ
IGQVVKESWWKPNSQGLLVNAIFFNLSWERTFNPEATYPREFRVNATKSV
MIPMMHEDSKFAFGILGNLKATAVLVPFSHGDLRMLLIKPDQPDGLAALQ
MKLQAMNILSVARNLTMMDVFVGIPKFKIHSDLELSPAFEKMGIKDIFKP
SKSFSTLLHRNTNFRIDGVIHVVTFEFQEQGIGTPSTDVGNGSLTHTFNG
VKYFLATHPFAFYIIDNTSIYFAGHVTSF*

IP10416.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11440-PA 379 GF11440-PA 1..379 1..379 1289 62.5 Plus
Dana\GF12698-PA 390 GF12698-PA 33..390 25..379 389 27.5 Plus
Dana\GF11691-PA 374 GF11691-PA 9..368 16..374 352 23.6 Plus
Dana\GF12245-PA 394 GF12245-PA 7..391 3..379 346 23.9 Plus
Dana\GF13146-PA 360 GF13146-PA 3..358 21..378 342 26.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22215-PA 379 GG22215-PA 1..379 1..379 1764 85.2 Plus
Dere\GG23231-PA 404 GG23231-PA 33..402 20..377 391 26.8 Plus
Dere\GG23260-PA 390 GG23260-PA 33..390 25..379 382 27.2 Plus
Dere\GG21843-PA 374 GG21843-PA 9..368 16..374 363 24.9 Plus
Dere\GG23230-PA 372 GG23230-PA 4..371 5..378 360 27 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23432-PA 384 GH23432-PA 36..380 38..375 393 27.8 Plus
Dgri\GH20566-PA 384 GH20566-PA 36..380 38..375 382 27.5 Plus
Dgri\GH22013-PA 401 GH22013-PA 23..375 28..375 364 25.2 Plus
Dgri\GH21519-PA 384 GH21519-PA 3..384 2..379 361 24.5 Plus
Dgri\GH20378-PA 397 GH20378-PA 30..394 16..379 352 25.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
Spn53F-PB 379 CG10956-PB 1..379 1..379 1953 100 Plus
Spn42De-PB 386 CG9460-PB 15..384 20..377 419 28.6 Plus
Spn42De-PA 404 CG9460-PA 33..402 20..377 419 28.6 Plus
Spn43Aa-PA 390 CG12172-PA 33..390 25..379 387 27.5 Plus
Spn55B-PA 374 CG10913-PA 9..368 16..374 377 25.8 Plus
Spn42Dd-PB 372 CG9456-PB 16..371 21..378 360 26.5 Plus
Spn43Ab-PB 393 CG1865-PB 8..390 4..379 354 24.3 Plus
Spn42Dc-PB 403 CG9455-PB 33..379 38..378 346 23.9 Plus
Spn42Dc-PA 403 CG9455-PA 33..379 38..378 346 23.9 Plus
Spn42Da-PJ 374 CG9453-PJ 20..359 26..364 327 23.4 Plus
Spn42Da-PI 406 CG9453-PI 52..391 26..364 327 23.4 Plus
Spn28F-PA 375 CG8137-PA 4..369 4..375 321 26.5 Plus
Spn47C-PC 382 CG7722-PC 22..378 26..375 321 25.7 Plus
Spn47C-PB 382 CG7722-PB 22..378 26..375 321 25.7 Plus
Spn47C-PA 382 CG7722-PA 22..378 26..375 321 25.7 Plus
Spn42Da-PL 379 CG9453-PL 20..379 26..379 312 23.5 Plus
Spn42Da-PK 379 CG9453-PK 20..379 26..379 312 23.5 Plus
Spn42Da-PH 379 CG9453-PH 20..379 26..379 312 23.5 Plus
Spn42Da-PF 411 CG9453-PF 52..411 26..379 312 23.5 Plus
Spn42Da-PE 411 CG9453-PE 52..411 26..379 312 23.5 Plus
Spn42Da-PG 379 CG9453-PG 20..376 26..376 302 22.6 Plus
Spn42Da-PD 411 CG9453-PD 52..408 26..376 302 22.6 Plus
Spn38F-PA 372 CG9334-PA 1..366 1..375 287 24.7 Plus
Spn42Da-PA 392 CG9453-PA 20..364 26..365 286 21.5 Plus
Spn42Da-PB 424 CG9453-PB 52..396 26..365 286 21.5 Plus
Spn38F-PB 370 CG9334-PB 1..364 1..375 285 24.7 Plus
Spn28B-PB 378 CG6717-PB 1..373 1..376 284 25.1 Plus
Spn28B-PA 378 CG6717-PA 1..373 1..376 284 25.1 Plus
Spn28Da-PB 384 CG31902-PB 16..369 21..376 282 24.8 Plus
Spn42Db-PC 388 CG9454-PC 17..372 26..375 247 22.6 Plus
Spn31A-PA 382 CG4804-PA 18..382 26..379 244 24 Plus
nec-PA 476 CG1857-PA 113..468 25..376 241 21.5 Plus
Spn28Db-PB 377 CG33121-PB 30..368 30..376 235 22.7 Plus
Spn43Ad-PA 407 CG1859-PA 55..404 38..376 222 22.1 Plus
Spn88Ea-PB 427 CG18525-PB 34..417 11..374 211 21.8 Plus
Spn88Ea-PA 427 CG18525-PA 34..417 11..374 211 21.8 Plus
Spn88Eb-PA 426 CG6687-PA 53..416 34..374 200 21.5 Plus
Spn100A-PA 649 CG1342-PA 398..616 164..366 196 23.3 Plus
Spn42Db-PD 286 CG9454-PD 17..279 26..286 182 21.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19420-PA 376 GI19420-PA 18..368 25..374 359 25 Plus
Dmoj\GI19487-PA 384 GI19487-PA 27..384 25..379 337 24.7 Plus
Dmoj\GI20051-PA 396 GI20051-PA 12..393 6..379 335 23.8 Plus
Dmoj\GI19810-PA 401 GI19810-PA 13..366 16..364 310 22.8 Plus
Dmoj\GI20049-PA 503 GI20049-PA 141..493 26..376 295 24.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11156-PA 390 GL11156-PA 4..390 2..379 392 26.2 Plus
Dper\GL10534-PA 376 GL10534-PA 9..368 16..374 391 26 Plus
Dper\GL11126-PA 421 GL11126-PA 57..418 25..376 375 27.1 Plus
Dper\GL11125-PA 404 GL11125-PA 33..379 38..378 372 25 Plus
Dper\GL10949-PA 394 GL10949-PA 7..391 3..379 333 23.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10637-PA 376 GA10637-PA 9..368 16..374 395 26.3 Plus
Dpse\GA11452-PA 390 GA11452-PA 4..390 2..379 385 26 Plus
Dpse\GA24618-PA 407 GA24618-PA 44..404 25..376 376 27.1 Plus
Dpse\GA21800-PA 404 GA21800-PA 33..379 38..378 373 25 Plus
Dpse\GA24617-PA 375 GA24617-PA 16..374 20..378 335 24.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20003-PA 340 GM20003-PA 1..340 40..379 1713 92.6 Plus
Dsec\GM20933-PA 390 GM20933-PA 33..390 25..379 386 27.8 Plus
Dsec\GM20905-PA 321 GM20905-PA 13..321 76..379 373 29.8 Plus
Dsec\GM20904-PA 372 GM20904-PA 1..371 1..378 372 27.5 Plus
Dsec\GM21844-PA 374 GM21844-PA 9..368 16..374 366 25.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25493-PA 328 GD25493-PA 1..319 1..341 1527 85 Plus
Dsim\GD10433-PA 598 GD10433-PA 244..598 37..379 421 28.5 Plus
Dsim\GD10459-PA 390 GD10459-PA 33..390 25..379 389 27.8 Plus
Dsim\GD11338-PA 374 GD11338-PA 9..368 16..374 366 25.5 Plus
Dsim\GD10271-PA 393 GD10271-PA 7..390 3..379 345 24.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22484-PA 376 GJ22484-PA 9..368 16..374 377 24.9 Plus
Dvir\GJ14940-PA 397 GJ14940-PA 10..394 3..379 359 24.4 Plus
Dvir\GJ18486-PA 377 GJ18486-PA 23..373 26..374 343 24.6 Plus
Dvir\GJ15151-PA 387 GJ15151-PA 30..387 25..379 339 24.2 Plus
Dvir\GJ17545-PA 407 GJ17545-PA 33..378 38..378 331 23.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20886-PA 391 GK20886-PA 17..390 19..379 387 26.3 Plus
Dwil\GK22245-PA 374 GK22245-PA 9..368 16..374 375 25.2 Plus
Dwil\GK21791-PA 365 GK21791-PA 8..365 25..379 364 25.6 Plus
Dwil\GK20759-PA 401 GK20759-PA 33..395 16..377 356 27.6 Plus
Dwil\GK20662-PA 383 GK20662-PA 34..379 38..375 346 26.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14212-PA 379 GE14212-PA 1..379 1..379 1768 87.1 Plus
Dyak\GE19082-PA 386 GE19082-PA 20..386 25..379 408 27.8 Plus
Dyak\GE11922-PA 374 GE11922-PA 9..368 16..374 387 26 Plus
Dyak\GE19110-PA 390 GE19110-PA 33..390 25..379 381 27.2 Plus
Dyak\GE19081-PA 374 GE19081-PA 1..373 1..378 359 26.5 Plus

IP10416.hyp Sequence

Translation from 10 to 1149

> IP10416.hyp
MYVLLLILLGISRYRAQKNSQLPDELYAAIVNSFSNRNIMFSTEMIRSSM
LFIYVGVEEDESEQIRKAMHYRGTHLSEYKPKTQKIFAMSVKKAPVAKSL
TRFYVRQNMKMSTEYRVFMRHTEGRARNIAFAREQLDEVNTFYSHEMGEQ
IGQVVKESWWKPNSQGLLVNAIFFNLSWERTFNPEATYPREFRVNATKSV
MIPMMHEDSKFAFGILGNLKATAVLVPFSHGDLRMLLIKPDQPDGLAALQ
MKLQAMNILSVARNLTMMDVFVGIPKFKIHSDLELSPAFEKMGIKDIFKP
SKSFSTLLHRNTNFRIDGVIHVVTFEFQEQGIGTPSTDVGNGSLTHTFNG
VKYFLATHPFAFYIIDNTSIYFAGHVTSF*

IP10416.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
Spn53F-PB 379 CG10956-PB 1..379 1..379 1953 100 Plus
Spn42De-PB 386 CG9460-PB 15..384 20..377 419 28.6 Plus
Spn42De-PA 404 CG9460-PA 33..402 20..377 419 28.6 Plus
Spn43Aa-PA 390 CG12172-PA 33..390 25..379 387 27.5 Plus
Spn55B-PA 374 CG10913-PA 9..368 16..374 377 25.8 Plus