Clone IP10472 Report

Search the DGRC for IP10472

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:104
Well:72
Vector:pOT2
Associated Gene/TranscriptCG13857-RA
Protein status:IP10472.pep: gold
Preliminary Size:1029
Sequenced Size:1454

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13857 2005-01-01 Successful iPCR screen
CG13857 2008-04-29 Release 5.5 accounting
CG13857 2008-08-15 Release 5.9 accounting
CG13857 2008-12-18 5.12 accounting

Clone Sequence Records

IP10472.complete Sequence

1454 bp (1454 high quality bases) assembled on 2005-02-26

GenBank Submission: BT023371

> IP10472.complete
AACGCGCCTGCCGACCAGTGGGCCAATTGATTCGTTAGCATTTCGATTAG
GACTCTTCTGCTAAATTAAGAAATCACCGATCTTCACTTACTGACCAGCT
ATCAAATGGGTAACCACATGTGGAGCATCATACTAATGCTGCTGGTGCTG
GAGCAACTAGTGGCCGACTCTGTGGCAGCCAATCTAGCCCAGCTGGTGAA
GAAGCAGAGCCAACAGAAGCAGTTGCAATCCTCGCAGCCAGGACTGCAGG
TGGGACAACAACAGTCGCAGGGACAGCAGATCCACACGCAGCAGTATGTC
CAAGACACATTGGGCGAGCAGCAGGATCTAAAGTCGGAGGACGAGGAGGA
ACACGATCCCTACCAGATGATGCAGGAGTCGAAACAGGAGTCGCGATTGC
CCAACTCTGCCAACTATCCCTGGAGTCCATATGCCGCACCTCAGGGCAAT
CCTTACGATGCCATGCCCAAGATGCTTCCCTTCATTGGCTATGCCCAGCC
AGTGCTCATACCCGTCCCACTCTACCTGGCTCCGGATATGTTCTATCCCG
CCTTTTCTGGCGCCAGCAACGATCTCGAGGATGTGGTGATGTCACGAGCC
TCCGGTGGTCGGCGTCCTGGGGCCAATCACGCGTCATCAGCCCGCAATTC
GCCCATCTACTACGTAAGACTGCCGCCCACACCGTATATGTTTTTGCCCA
ATATGCCAACGGCTCCATTTGGGGGTGGATTCTCACCACTGCTGACCTAC
CAGCCCATGCCCTCATTCTCCGCCTACGGTTCGGTATTCAATTTGCCCGT
GAACTTCCTGGCCAACGGAAAGCCCACTGGAGTCTACCAAGTGAACGGAT
CTCCGGGTGAGGCGATGGGATCCCTGACACCTGGCTTGGGTGGCGGTGGA
TATGGAATGCGGCCACCGACGCCTAGTAATCCCTACAGACCCATGTCGTC
GCCTTCGATGGGTGGTTATGGAGGCTCTCAGCAGAGCTTTGGACTCGCCT
CCATGCCGGTTCCTCAGCAGGACTCCAAGCTGACATCGCTGAAGCGTCCG
TTCGTGTTCAACGGTCGTCCCGAGGACATATACATCCTGCCAAACAACTT
GGGTCCGCTCTACAACGAGCAGAGCTACTACTAATTGCACTTCAGGCAAA
TGGCTGTGGCAACAACTGAAAGTATTACATAATGCATTTACTAGATCGTC
TTTTCGATCGTAACGAAGCTTGAGAAAAACAATTTAATAAACTATACACT
TGGAAAAAAATGTTTTTTTTTTTTTTGGTGTAGCATCCAATTTGACGTCA
TACAACGAAATAGCTTATTTTTATTATATTTATGTACGTATATGTAATCT
TCTCCATCAATTATATTTTGTATAAATTGTATATTTTTGGCCGAAAATAT
CAGATGGTGTAGACCAATAAATAGTAGTCATAATATCAAAAAAAAAAAAA
AAAA

IP10472.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13857-RA 1449 CG13857-RA 15..1449 1..1437 7105 99.8 Plus
CG7059.a 1120 CG7059.a 947..1120 1437..1264 870 100 Minus
CG7059.c 1150 CG7059.c 977..1150 1437..1264 870 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18215721..18217060 1437..96 6585 99.6 Minus
chr3R 27901430 chr3R 18217540..18217637 98..1 490 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:02:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22392189..22393528 1437..96 6615 99.7 Minus
3R 32079331 3R 22394007..22394104 98..1 490 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:33:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22133020..22134359 1437..96 6630 99.8 Minus
3R 31820162 3R 22134838..22134935 98..1 490 100 Minus
Blast to na_te.dros performed 2019-03-16 15:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 1083..1191 1225..1332 128 58.7 Plus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1097..1171 1315..1388 111 66.2 Plus

IP10472.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:30:53 Download gff for IP10472.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18215721..18217057 99..1437 99 <- Minus
chr3R 18217540..18217637 1..98 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:46:08 Download gff for IP10472.complete
Subject Subject Range Query Range Percent Splice Strand
CG13857-RA 1..1029 106..1134 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:11:14 Download gff for IP10472.complete
Subject Subject Range Query Range Percent Splice Strand
CG13857-RA 1..1029 106..1134 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:47:01 Download gff for IP10472.complete
Subject Subject Range Query Range Percent Splice Strand
CG13857-RA 1..1029 106..1134 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:55:54 Download gff for IP10472.complete
Subject Subject Range Query Range Percent Splice Strand
CG13857-RA 1..1029 106..1134 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:47:48 Download gff for IP10472.complete
Subject Subject Range Query Range Percent Splice Strand
CG13857-RA 1..1029 106..1134 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:05:08 Download gff for IP10472.complete
Subject Subject Range Query Range Percent Splice Strand
CG13857-RA 1..1435 1..1437 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:11:14 Download gff for IP10472.complete
Subject Subject Range Query Range Percent Splice Strand
CG13857-RA 1..1435 1..1437 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:47:01 Download gff for IP10472.complete
Subject Subject Range Query Range Percent Splice Strand
CG13857-RA 1..1435 1..1437 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:55:54 Download gff for IP10472.complete
Subject Subject Range Query Range Percent Splice Strand
CG13857-RA 1..1435 1..1437 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:47:48 Download gff for IP10472.complete
Subject Subject Range Query Range Percent Splice Strand
CG13857-RA 1..1435 1..1437 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:30:53 Download gff for IP10472.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22394007..22394104 1..98 100   Minus
3R 22392189..22393525 99..1437 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:30:53 Download gff for IP10472.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22394007..22394104 1..98 100   Minus
3R 22392189..22393525 99..1437 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:30:53 Download gff for IP10472.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22394007..22394104 1..98 100   Minus
3R 22392189..22393525 99..1437 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:47:01 Download gff for IP10472.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18217911..18219247 99..1437 99 <- Minus
arm_3R 18219729..18219826 1..98 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:31:07 Download gff for IP10472.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22134838..22134935 1..98 100   Minus
3R 22133020..22134356 99..1437 99 <- Minus

IP10472.pep Sequence

Translation from 105 to 1133

> IP10472.pep
MGNHMWSIILMLLVLEQLVADSVAANLAQLVKKQSQQKQLQSSQPGLQVG
QQQSQGQQIHTQQYVQDTLGEQQDLKSEDEEEHDPYQMMQESKQESRLPN
SANYPWSPYAAPQGNPYDAMPKMLPFIGYAQPVLIPVPLYLAPDMFYPAF
SGASNDLEDVVMSRASGGRRPGANHASSARNSPIYYVRLPPTPYMFLPNM
PTAPFGGGFSPLLTYQPMPSFSAYGSVFNLPVNFLANGKPTGVYQVNGSP
GEAMGSLTPGLGGGGYGMRPPTPSNPYRPMSSPSMGGYGGSQQSFGLASM
PVPQQDSKLTSLKRPFVFNGRPEDIYILPNNLGPLYNEQSYY*

IP10472.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16570-PA 342 GF16570-PA 1..342 1..342 1276 79.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12521-PA 340 GG12521-PA 1..340 1..342 1433 93 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17508-PA 357 GH17508-PA 1..342 1..329 878 56.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13857-PA 342 CG13857-PA 1..342 1..342 1821 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10375-PA 353 GI10375-PA 18..353 20..342 894 59.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23342-PA 339 GL23342-PA 1..339 1..342 1186 75.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:51:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12575-PA 339 GA12575-PA 1..339 1..342 1182 75.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23656-PA 342 GM23656-PA 1..342 1..342 1719 97.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18464-PA 255 GD18464-PA 1..255 88..342 1279 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22837-PA 353 GJ22837-PA 1..338 1..329 938 61.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:51:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12981-PA 353 GK12981-PA 2..353 4..342 999 62.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24043-PA 342 GE24043-PA 1..342 1..342 1502 94.4 Plus

IP10472.hyp Sequence

Translation from 105 to 1133

> IP10472.hyp
MGNHMWSIILMLLVLEQLVADSVAANLAQLVKKQSQQKQLQSSQPGLQVG
QQQSQGQQIHTQQYVQDTLGEQQDLKSEDEEEHDPYQMMQESKQESRLPN
SANYPWSPYAAPQGNPYDAMPKMLPFIGYAQPVLIPVPLYLAPDMFYPAF
SGASNDLEDVVMSRASGGRRPGANHASSARNSPIYYVRLPPTPYMFLPNM
PTAPFGGGFSPLLTYQPMPSFSAYGSVFNLPVNFLANGKPTGVYQVNGSP
GEAMGSLTPGLGGGGYGMRPPTPSNPYRPMSSPSMGGYGGSQQSFGLASM
PVPQQDSKLTSLKRPFVFNGRPEDIYILPNNLGPLYNEQSYY*

IP10472.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG13857-PA 342 CG13857-PA 1..342 1..342 1821 100 Plus