Clone IP10538 Report

Search the DGRC for IP10538

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:105
Well:38
Vector:pOT2
Associated Gene/TranscriptCG12831-RB
Protein status:IP10538.pep: gold
Preliminary Size:1003
Sequenced Size:968

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12831 2005-01-01 Successful iPCR screen
CG12831 2008-04-29 Release 5.5 accounting
CG12831 2008-12-18 5.12 accounting

Clone Sequence Records

IP10538.complete Sequence

968 bp (968 high quality bases) assembled on 2005-03-06

GenBank Submission: BT023335

> IP10538.complete
CAGCAGAAACCCAAAACCAAAAGTCAAAATTCACTTTATTGTCATATAGA
CACGGTTCACTTTCCTTCAATTGTATTTCTCACGAAACACATAAATTCTA
GAAGTCCATCGCGTTCAAATCCCCATTTGTATCAAGTCGCGAGGTGAACG
CCATGTCAGCATGGAAGATAGCCCCGTGTCGAGCACCGGGTATCCCCAAA
TTGGATGAGCAGGAGGAGAGCGACCTGGTGTCCAGCGGCATAGATCCCAG
CGACGCAGAGGAGGAAACCGATCTGGATGCCGCCTACGATGAGCTGGAGG
AGATGAAGCAGCGTCTGATCACACTGCGTAATAAGATAATAATCACAAAT
CCAGATGCGTGCCAGGATCTAAAAATTCGGGATCTCTGGACCCCAGAGGG
CGGGGAACTGCAGGAGTTGCGTGACCAGAAGTGCCAACTTATTTGCCAAC
TTCAAGAGGCAACCCAGCACCTGAAGGACTCCCAAAATGAGCTCAAGGAA
CTGGAGACTTGGCGATGCCACCTCCAATTACGCATCCATCAGGCAAAGCG
GCAGCTTAGTCAGTTCGAGAACTTCAAACTGAAGGTTATCCACCAATTCG
GGCTGTGCATCGAGCGTTGGGAGAACCAGAAGACATGCAAACTGGACTGC
ACCACGTACCGCAAGGAAATGGCGGCCCACATCCTTCACGCGGACAACTC
CCGAAAGAGCGTGGTGTACCAAAAATGCCACAAGTCCTACAGACGCCGCA
TCCGCGTCGAGCTTATGCTGGTCCGCGTTTTCCTGCACAATCTCTTCGAG
GCGATGGTCAACGACTTTAGGTTCTTTAGCCGCCACATGAGCATTAACTT
CTCCGTTGGATCCACAGACCACACAGTTCCGGAAACTCCAATCAACACTG
TTTCTTCTTCCGACCAGGAGAGCCGCAAATAAATGTTCCAACAATTAAAA
AAAAAAAAAAAAAAAAAA

IP10538.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12831-RB 1184 CG12831-RB 102..1046 4..948 4725 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:11:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 2960601..2961444 847..4 4205 99.9 Minus
chr2R 21145070 chr2R 2960445..2960543 946..848 480 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:02:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7073201..7074044 847..4 4220 100 Minus
2R 25286936 2R 7073043..7073143 948..848 505 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7074400..7075243 847..4 4220 100 Minus
2R 25260384 2R 7074242..7074342 948..848 505 100 Minus
Blast to na_te.dros performed on 2019-03-15 12:11:56 has no hits.

IP10538.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:12:54 Download gff for IP10538.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 2960445..2960543 848..946 98 <- Minus
chr2R 2960601..2961446 1..847 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:46:18 Download gff for IP10538.complete
Subject Subject Range Query Range Percent Splice Strand
CG12831-RB 1..780 153..932 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:16:52 Download gff for IP10538.complete
Subject Subject Range Query Range Percent Splice Strand
CG12831-RB 1..780 153..932 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:39:00 Download gff for IP10538.complete
Subject Subject Range Query Range Percent Splice Strand
CG12831-RB 1..780 153..932 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:01:15 Download gff for IP10538.complete
Subject Subject Range Query Range Percent Splice Strand
CG12831-RA 1..695 153..847 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:54:14 Download gff for IP10538.complete
Subject Subject Range Query Range Percent Splice Strand
CG12831-RB 1..780 153..932 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:16:12 Download gff for IP10538.complete
Subject Subject Range Query Range Percent Splice Strand
CG12831-RB 71..1015 1..946 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:16:52 Download gff for IP10538.complete
Subject Subject Range Query Range Percent Splice Strand
CG12831-RB 71..1015 1..946 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:39:00 Download gff for IP10538.complete
Subject Subject Range Query Range Percent Splice Strand
CG12831-RB 71..1015 1..946 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:01:15 Download gff for IP10538.complete
Subject Subject Range Query Range Percent Splice Strand
CG12831-RA 118..963 1..847 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:54:14 Download gff for IP10538.complete
Subject Subject Range Query Range Percent Splice Strand
CG12831-RB 107..1051 1..946 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:12:54 Download gff for IP10538.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7073045..7073143 848..946 100 <- Minus
2R 7073201..7074046 1..847 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:12:54 Download gff for IP10538.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7073045..7073143 848..946 100 <- Minus
2R 7073201..7074046 1..847 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:12:54 Download gff for IP10538.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7073045..7073143 848..946 100 <- Minus
2R 7073201..7074046 1..847 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:39:00 Download gff for IP10538.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2960550..2960648 848..946 100 <- Minus
arm_2R 2960706..2961551 1..847 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:36:58 Download gff for IP10538.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7074400..7075245 1..847 99   Minus
2R 7074244..7074342 848..946 100 <- Minus

IP10538.pep Sequence

Translation from 152 to 931

> IP10538.pep
MSAWKIAPCRAPGIPKLDEQEESDLVSSGIDPSDAEEETDLDAAYDELEE
MKQRLITLRNKIIITNPDACQDLKIRDLWTPEGGELQELRDQKCQLICQL
QEATQHLKDSQNELKELETWRCHLQLRIHQAKRQLSQFENFKLKVIHQFG
LCIERWENQKTCKLDCTTYRKEMAAHILHADNSRKSVVYQKCHKSYRRRI
RVELMLVRVFLHNLFEAMVNDFRFFSRHMSINFSVGSTDHTVPETPINTV
SSSDQESRK*

IP10538.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12250-PA 280 GF12250-PA 31..273 31..256 569 48.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10773-PA 251 GG10773-PA 1..249 1..251 990 74.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20383-PA 372 GH20383-PA 136..360 4..224 407 40.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12831-PC 259 CG12831-PC 1..259 1..259 1367 100 Plus
CG12831-PB 259 CG12831-PB 1..259 1..259 1367 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20056-PA 241 GI20056-PA 9..238 4..227 308 35.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10953-PA 235 GL10953-PA 2..234 4..231 508 42.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11838-PA 235 GA11838-PA 2..234 4..231 508 42.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20822-PA 244 GM20822-PA 1..242 1..242 1138 86 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10275-PA 244 GD10275-PA 1..242 1..242 1124 85.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14947-PA 239 GJ14947-PA 5..238 1..229 349 36.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19399-PA 249 GK19399-PA 2..242 4..230 401 36.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24224-PA 244 GE24224-PA 1..238 1..238 965 75.2 Plus

IP10538.hyp Sequence

Translation from 152 to 931

> IP10538.hyp
MSAWKIAPCRAPGIPKLDEQEESDLVSSGIDPSDAEEETDLDAAYDELEE
MKQRLITLRNKIIITNPDACQDLKIRDLWTPEGGELQELRDQKCQLICQL
QEATQHLKDSQNELKELETWRCHLQLRIHQAKRQLSQFENFKLKVIHQFG
LCIERWENQKTCKLDCTTYRKEMAAHILHADNSRKSVVYQKCHKSYRRRI
RVELMLVRVFLHNLFEAMVNDFRFFSRHMSINFSVGSTDHTVPETPINTV
SSSDQESRK*

IP10538.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG12831-PC 259 CG12831-PC 1..259 1..259 1367 100 Plus
CG12831-PB 259 CG12831-PB 1..259 1..259 1367 100 Plus