Clone IP10558 Report

Search the DGRC for IP10558

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:105
Well:58
Vector:pOT2
Associated Gene/TranscriptCG13501-RA
Protein status:IP10558.pep: gold
Preliminary Size:1242
Sequenced Size:1558

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13501 2005-01-01 Successful iPCR screen
CG13501 2008-04-29 Release 5.5 accounting
CG13501 2008-08-15 Release 5.9 accounting
CG13501 2008-12-18 5.12 accounting

Clone Sequence Records

IP10558.complete Sequence

1558 bp (1558 high quality bases) assembled on 2005-05-04

GenBank Submission: BT023319

> IP10558.complete
ATTAAACCAAAATGTGGGAGCAGCTAGCGAGATATCGCAATCACTTTCTG
CAACACGAAATCAAGGATGTGATGAAGCCGACCTCCATAAACAGCTTGCA
GACTACGGAGTGGACGCATCATATGGAGAAACGGAATATTTGCAAGTGTA
TGCCGCTCTGCTGCAATTCGACCTCGACGCACCTGGCGGATCGTGCTGAA
CTGGCCTACGGCTGGTTTGCACTGCCCAAATTGCTCAAAGAACTGGATAG
TGATGTTAGGCTGACCCATTGGAAGGCAGTCGTATCGTTGTCGGAATTCG
TTCTAAATCCACTGAATGCCCAAAGAGCTATCATTGAAATGGACCTTGTT
AGAAAGTTGAAGAATGCCTTTATGCGTATGAGATTGAAGCATCACAAGGA
GGAGCACCGGGAGGTGGAGATGTATCTAAGGATTTATAATATACTATCCC
GCAATTTGGATGGAGCCGAAAATATAGCCAACCGCAAGTGCTTAAGGGTG
GAGTTTTATAAAATCATTAAGAACCAAGAGCCTATTAAGGATGAATTGGC
TTCAGAGATATTGCGAAATTTGACATGCAAGCCAAAAGTTCTGGGTATAT
TCCTGGAGGATCCTGAAAACTTTTCCGCCTTAGCCGAGATCTTCAGACAG
GATCCATGCCGTCCGCAATTCCCGTTGCATTTGTGGCATCACCTGTGTGA
CATGCTGGAAGTGGCACCCGATCGGGGCATCGAGCTGGGCCTCTTCGAGC
TGCTGCACTCGAGGATCCTAAACCGCTTGTCCAACTTCTGGGACATGAAC
ACCAAGGCATTTGCGCTGCTACTCTGCTGTGCTGAGGGTCAGCGGCGTTT
CGATGCCGTGGATGGTGTAAAGCTGCTTTACGACGTCTTTGCCCAGCCCG
ATGAGAATCCGCGAATGTTGCTGCCTCGCCAGAAGGTGGAGAACTGGGAA
TATACGGCTTTGGCCCTGCTCAATGGGCTCCATAGCAAGCGGGCATTGTG
GCGCAGCAGGGAGTTCACCCAACTGCCGTGTTATGTGGGTCGTCTCATGA
CTTCGACGACGGATAATCCCCGCCTGCAAATTTATTGCCTTAAAGTGTTT
CGGGAGTTGGGTGTAATGCCGTGCATTAAGCGCTACATCATTGGCAACTG
GCTGCAGGACATCTGCAAGTTGTTCTGCCTGGATGCTGATGCGGAATGCG
CCCGTGATGCTTTGGTCGATTGGTTGCGTCGGGATATTGCCGATAGTAGT
TAAATCTCACGGTTGTAGTTATATTCATTTGAACCGTATTGTTTGTTACA
TGGAAAACATCGCTTTTCCCCACTTTCAACCGCTCAGATAAATCCAAACC
GTTTCAAAAGCACCCCTGCTGATGTCCCAAAGAGAAAACGGTTAAAAGAG
GGGCAGAAATGGCAAAGAGAGGGAGAGAGAGAGCTTTGCTGTTTAGCAAA
ACATTGTAAATTGTAGTAAATATTTAGCAACTCTCGAGCATTTCGTTTGA
TGTTTATTTATAAATCTCTTAAAAATAAATTCATCCTGTACTTGAAAAAA
AAAAAAAA

IP10558.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13501-RA 1652 CG13501-RA 100..1644 1..1545 7725 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17945282..17946239 1544..587 4655 99.1 Minus
chr2R 21145070 chr2R 17946634..17946887 357..104 1180 97.6 Minus
chr2R 21145070 chr2R 17946290..17946439 588..439 750 100 Minus
chr2R 21145070 chr2R 17946941..17947048 108..1 540 100 Minus
chr2R 21145070 chr2R 17946490..17946572 438..356 400 98.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:02:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22058903..22059861 1545..587 4795 100 Minus
2R 25286936 2R 22060257..22060510 357..104 1255 99.6 Minus
2R 25286936 2R 22059912..22060061 588..439 750 100 Minus
2R 25286936 2R 22060564..22060671 108..1 540 100 Minus
2R 25286936 2R 22060112..22060194 438..356 415 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 22060102..22061060 1545..587 4795 100 Minus
2R 25260384 2R 22061456..22061709 357..104 1255 99.6 Minus
2R 25260384 2R 22061111..22061260 588..439 750 100 Minus
2R 25260384 2R 22061763..22061870 108..1 540 100 Minus
2R 25260384 2R 22061311..22061393 438..356 415 100 Minus
Blast to na_te.dros performed on 2019-03-15 19:26:25 has no hits.

IP10558.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:27:19 Download gff for IP10558.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17946941..17947048 1..108 100   Minus
chr2R 17945282..17946237 589..1544 99 <- Minus
chr2R 17946290..17946439 439..588 100 <- Minus
chr2R 17946490..17946572 356..438 98 <- Minus
chr2R 17946636..17946882 109..355 97 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:46:23 Download gff for IP10558.complete
Subject Subject Range Query Range Percent Splice Strand
CG13501-RA 1..1242 12..1253 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:44:54 Download gff for IP10558.complete
Subject Subject Range Query Range Percent Splice Strand
CG13501-RA 1..1242 12..1253 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:51:28 Download gff for IP10558.complete
Subject Subject Range Query Range Percent Splice Strand
CG13501-RA 1..1242 12..1253 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:26:15 Download gff for IP10558.complete
Subject Subject Range Query Range Percent Splice Strand
CG13501-RA 1..1242 12..1253 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:18:19 Download gff for IP10558.complete
Subject Subject Range Query Range Percent Splice Strand
CG13501-RA 1..1242 12..1253 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:18:02 Download gff for IP10558.complete
Subject Subject Range Query Range Percent Splice Strand
CG13501-RA 40..1583 1..1544 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:44:54 Download gff for IP10558.complete
Subject Subject Range Query Range Percent Splice Strand
CG13501-RA 40..1583 1..1544 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:51:28 Download gff for IP10558.complete
Subject Subject Range Query Range Percent Splice Strand
CG13501-RA 40..1583 1..1544 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:26:15 Download gff for IP10558.complete
Subject Subject Range Query Range Percent Splice Strand
CG13501-RA 40..1583 1..1544 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:18:19 Download gff for IP10558.complete
Subject Subject Range Query Range Percent Splice Strand
CG13501-RA 40..1583 1..1544 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:27:19 Download gff for IP10558.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22058904..22059859 589..1544 100 <- Minus
2R 22059912..22060061 439..588 100 <- Minus
2R 22060112..22060194 356..438 100 <- Minus
2R 22060259..22060505 109..355 100 <- Minus
2R 22060564..22060671 1..108 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:27:19 Download gff for IP10558.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22058904..22059859 589..1544 100 <- Minus
2R 22059912..22060061 439..588 100 <- Minus
2R 22060112..22060194 356..438 100 <- Minus
2R 22060259..22060505 109..355 100 <- Minus
2R 22060564..22060671 1..108 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:27:19 Download gff for IP10558.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22058904..22059859 589..1544 100 <- Minus
2R 22059912..22060061 439..588 100 <- Minus
2R 22060112..22060194 356..438 100 <- Minus
2R 22060259..22060505 109..355 100 <- Minus
2R 22060564..22060671 1..108 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:51:28 Download gff for IP10558.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17946409..17947364 589..1544 100 <- Minus
arm_2R 17947417..17947566 439..588 100 <- Minus
arm_2R 17947617..17947699 356..438 100 <- Minus
arm_2R 17947764..17948010 109..355 100 <- Minus
arm_2R 17948069..17948176 1..108 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:05:53 Download gff for IP10558.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22061111..22061260 439..588 100 <- Minus
2R 22061311..22061393 356..438 100 <- Minus
2R 22060103..22061058 589..1544 100 <- Minus
2R 22061458..22061704 109..355 100 <- Minus
2R 22061763..22061870 1..108 100   Minus

IP10558.hyp Sequence

Translation from 11 to 1252

> IP10558.hyp
MWEQLARYRNHFLQHEIKDVMKPTSINSLQTTEWTHHMEKRNICKCMPLC
CNSTSTHLADRAELAYGWFALPKLLKELDSDVRLTHWKAVVSLSEFVLNP
LNAQRAIIEMDLVRKLKNAFMRMRLKHHKEEHREVEMYLRIYNILSRNLD
GAENIANRKCLRVEFYKIIKNQEPIKDELASEILRNLTCKPKVLGIFLED
PENFSALAEIFRQDPCRPQFPLHLWHHLCDMLEVAPDRGIELGLFELLHS
RILNRLSNFWDMNTKAFALLLCCAEGQRRFDAVDGVKLLYDVFAQPDENP
RMLLPRQKVENWEYTALALLNGLHSKRALWRSREFTQLPCYVGRLMTSTT
DNPRLQIYCLKVFRELGVMPCIKRYIIGNWLQDICKLFCLDADAECARDA
LVDWLRRDIADSS*

IP10558.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG13501-PA 413 CG13501-PA 1..413 1..413 2215 100 Plus
CG13501-PB 393 CG13501-PB 1..393 21..413 2103 100 Plus

IP10558.pep Sequence

Translation from 11 to 1252

> IP10558.pep
MWEQLARYRNHFLQHEIKDVMKPTSINSLQTTEWTHHMEKRNICKCMPLC
CNSTSTHLADRAELAYGWFALPKLLKELDSDVRLTHWKAVVSLSEFVLNP
LNAQRAIIEMDLVRKLKNAFMRMRLKHHKEEHREVEMYLRIYNILSRNLD
GAENIANRKCLRVEFYKIIKNQEPIKDELASEILRNLTCKPKVLGIFLED
PENFSALAEIFRQDPCRPQFPLHLWHHLCDMLEVAPDRGIELGLFELLHS
RILNRLSNFWDMNTKAFALLLCCAEGQRRFDAVDGVKLLYDVFAQPDENP
RMLLPRQKVENWEYTALALLNGLHSKRALWRSREFTQLPCYVGRLMTSTT
DNPRLQIYCLKVFRELGVMPCIKRYIIGNWLQDICKLFCLDADAECARDA
LVDWLRRDIADSS*

IP10558.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11600-PA 412 GF11600-PA 1..412 1..413 1681 77.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20725-PA 413 GG20725-PA 1..413 1..413 1980 90.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21345-PA 415 GH21345-PA 1..414 1..413 1502 66.7 Plus
Dgri\GH23277-PA 70 GH23277-PA 1..69 345..413 270 66.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG13501-PA 413 CG13501-PA 1..413 1..413 2215 100 Plus
CG13501-PB 393 CG13501-PB 1..393 21..413 2103 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20762-PA 412 GI20762-PA 1..412 1..413 1457 65.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17497-PA 412 GL17497-PA 1..412 1..413 1664 74.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12330-PA 412 GA12330-PA 1..412 1..413 1654 73.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15670-PA 413 GM15670-PA 1..413 1..413 2125 95.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25151-PA 413 GD25151-PA 1..413 1..413 2126 95.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20498-PA 413 GJ20498-PA 1..412 1..413 1549 70.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15631-PA 410 GK15631-PA 1..410 1..413 1546 69.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:39:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13656-PA 413 GE13656-PA 1..413 1..413 2024 90.1 Plus