Clone IP10662 Report

Search the DGRC for IP10662

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:106
Well:62
Vector:pOT2
Associated Gene/TranscriptCG13609-RA
Protein status:IP10662.pep: gold
Preliminary Size:1095
Sequenced Size:1770

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13609 2005-01-01 Successful iPCR screen
CG13609 2008-04-29 Release 5.5 accounting
CG13609 2008-08-15 Release 5.9 accounting
CG13609 2008-12-18 5.12 accounting

Clone Sequence Records

IP10662.complete Sequence

1770 bp (1770 high quality bases) assembled on 2005-02-26

GenBank Submission: BT023259

> IP10662.complete
GTTATGAACACTGGGATGCGGGGTGCCGACGCTAACATTCAAACACATAA
ATAACACGAAGTCTAAAGATAATTGCGCTGCGAGACGGTTTTAGCGAGTT
TTTAGTTTTAATTTTGTTTTGACACAAACGCAGAAGAAGAAGTGAGAGTG
ATTGGCCAGGGTTGCATTGCGTTGCATCTCGATGGCCGCCAATCGACCAA
CCAGCCAACCGATAGTGCGATACCAATAACAAACCGCTAAAAGCAAGAAG
AAGCATATCACAGATAAACAAATTTTTAACCGACAAGTTGCCTATCCGAC
AAAATCCATATTTAATTAGATTGCATCTTGAAAGGGGCATGGAGCCGGTT
CCAGAGGAAGCCCGAGGAGTGGGTGATGACGAAGGGGAACTCGATTGTCT
AACACATATGATTGGGGCGTTGCTTTTGCAAAAAGAACCGGAAAATCCTG
AAAATGGTGACTCAAAGGAAACAATTTGGAGTGGAGAGCTCGAATGGGAG
GATGCACAGATATTGGATCAACCGAAGACTCTGCACACGGTCCAATGCAA
AATCTGCTCCATGGTTAAAGAAGGTCAGCCGGAGATCAACACGGAGAACT
GGCCAAACAAGCTGAAAACACAACTGATACCCAAAAAAGTGCTGGGTAAA
ATTGGCGAACAATTCCTAAAGGATGCCAGGATGGTTGTATTCCGATCCAG
CCAAGGAGAGGTACTCAATTTATTGATCACGGCGATGAGCTCTGGTTTCG
CTGGTTGCATCCACTTCCCCTCCAATCCCAACTGCAACATCAAGGCTCTA
ATTCTCATCTACTCGCGCGATCATCAAGCTTTGGTTGGCTTCATACCCAA
CAATGAGGATTCGTTTAGCGAACGACTGCAGGAGATTCTTCAGGGTGCAA
AACGAAAGCCGGGCGTCAAAACACCCAAGCAGCCACAGCCAGAAGAACCG
CCTCCTGTGGAGGAAGATGCCATTATAAATGAACTCCTATGGACTGGATC
GCTGAATTGGTCGACACAAGCAAGTTTAGAGGAGCCAAGCATTAGTCACA
AGCTTGAGTGTTCCGTGTACATAGCTATAAAAAACGGTGATCCCGGGATC
AGTGCGGAGGATTGGCCAACTGATATGCCTATGGTTTTGATGCCTTCAAT
TTATCTTGGTCAGTTCGCCGGAGCGTTTATAAAGGACTCGAAACTTATAA
TTCTCCGATCGACACCTGGAGAAGAACACGACTCGCTAGCATCATCAATG
TCCGCCGGCAGTTGTGGCTGTGCCCGATTTTCCTCCGAGGTCGTCTGCAA
GGTTATCATGCTGCTGTATTCGTCCCCGAGGAACGCCTTCCTGGGCTTTA
TTCCGAGAGATCAAGCTAATTTCGTCAAGCGATTGCGGGAAGTATTAGAC
GAACATCGCCAAAAGGCGAGAAACAAAGAGTAAACAAGTATCTCAAGATG
ATCTCAAAGTATATTTAAAATATTTATTTGAACTCTAGGTATATCAAATT
TATAGTCATCGAAGAAAGTATTGTTTTATAATTAGATATTTTTTTTTTTT
TGTTTAATTATTATAAATATAGACCAAAGAATATTTAAACAAGATACGCT
CGCACGTCCCCAGTGGGAAAACATACCAAGGCTAAAATATGTAATCAGAT
AAATAATCATAAAACTGCGAACTCCTGAATGCATTTACGCAAGTTTGTAT
TACGAATGTCTGTCATACGTTGCCATATTAAAACTTAACCGATCTTATAA
ATAAAAAAAAAAAAAAAAAA

IP10662.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:43:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG13609-RA 1753 CG13609-RA 1..1753 1..1752 8725 99.9 Plus
CG5669-RA 3493 CG5669-RA 1..152 152..1 760 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20050127..20051895 1..1752 8380 98.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:02:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24226786..24228541 1..1755 8730 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:33:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23967617..23969372 1..1755 8740 99.9 Plus
Blast to na_te.dros performed 2019-03-16 23:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
transib3 2883 transib3 TRANSIB3 2883bp 1794..1893 1621..1720 113 59.8 Plus

IP10662.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:47:59 Download gff for IP10662.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20050127..20051895 1..1752 95   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:46:42 Download gff for IP10662.complete
Subject Subject Range Query Range Percent Splice Strand
CG13609-RA 1..1095 339..1433 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:11:06 Download gff for IP10662.complete
Subject Subject Range Query Range Percent Splice Strand
CG13609-RA 1..1095 339..1433 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:50:03 Download gff for IP10662.complete
Subject Subject Range Query Range Percent Splice Strand
CG13609-RA 1..1095 339..1433 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:55:47 Download gff for IP10662.complete
Subject Subject Range Query Range Percent Splice Strand
CG13609-RA 1..1095 339..1433 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:59:14 Download gff for IP10662.complete
Subject Subject Range Query Range Percent Splice Strand
CG13609-RA 1..1095 339..1433 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:04:50 Download gff for IP10662.complete
Subject Subject Range Query Range Percent Splice Strand
CG13609-RA 1..1753 1..1752 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:11:06 Download gff for IP10662.complete
Subject Subject Range Query Range Percent Splice Strand
CG13609-RA 29..1781 1..1752 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:03 Download gff for IP10662.complete
Subject Subject Range Query Range Percent Splice Strand
CG13609-RA 1..1516 238..1752 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:55:48 Download gff for IP10662.complete
Subject Subject Range Query Range Percent Splice Strand
CG13609-RA 1..1753 1..1752 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:59:14 Download gff for IP10662.complete
Subject Subject Range Query Range Percent Splice Strand
CG13609-RA 1..1516 238..1752 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:47:59 Download gff for IP10662.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24226786..24228538 1..1752 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:47:59 Download gff for IP10662.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24226786..24228538 1..1752 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:47:59 Download gff for IP10662.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24226786..24228538 1..1752 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:03 Download gff for IP10662.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20052508..20054260 1..1752 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:31:00 Download gff for IP10662.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23967617..23969369 1..1752 99   Plus

IP10662.hyp Sequence

Translation from 338 to 1432

> IP10662.hyp
MEPVPEEARGVGDDEGELDCLTHMIGALLLQKEPENPENGDSKETIWSGE
LEWEDAQILDQPKTLHTVQCKICSMVKEGQPEINTENWPNKLKTQLIPKK
VLGKIGEQFLKDARMVVFRSSQGEVLNLLITAMSSGFAGCIHFPSNPNCN
IKALILIYSRDHQALVGFIPNNEDSFSERLQEILQGAKRKPGVKTPKQPQ
PEEPPPVEEDAIINELLWTGSLNWSTQASLEEPSISHKLECSVYIAIKNG
DPGISAEDWPTDMPMVLMPSIYLGQFAGAFIKDSKLIILRSTPGEEHDSL
ASSMSAGSCGCARFSSEVVCKVIMLLYSSPRNAFLGFIPRDQANFVKRLR
EVLDEHRQKARNKE*

IP10662.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:30:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG13609-PA 364 CG13609-PA 1..364 1..364 1913 100 Plus
MED25-PA 863 CG12254-PA 503..744 31..265 435 37.6 Plus
MED25-PA 863 CG12254-PA 479..668 171..355 374 41.1 Plus

IP10662.pep Sequence

Translation from 338 to 1432

> IP10662.pep
MEPVPEEARGVGDDEGELDCLTHMIGALLLQKEPENPENGDSKETIWSGE
LEWEDAQILDQPKTLHTVQCKICSMVKEGQPEINTENWPNKLKTQLIPKK
VLGKIGEQFLKDARMVVFRSSQGEVLNLLITAMSSGFAGCIHFPSNPNCN
IKALILIYSRDHQALVGFIPNNEDSFSERLQEILQGAKRKPGVKTPKQPQ
PEEPPPVEEDAIINELLWTGSLNWSTQASLEEPSISHKLECSVYIAIKNG
DPGISAEDWPTDMPMVLMPSIYLGQFAGAFIKDSKLIILRSTPGEEHDSL
ASSMSAGSCGCARFSSEVVCKVIMLLYSSPRNAFLGFIPRDQANFVKRLR
EVLDEHRQKARNKE*

IP10662.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16117-PA 861 GF16117-PA 523..668 43..185 433 52.1 Plus
Dana\GF16117-PA 861 GF16117-PA 520..672 211..358 371 47.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11269-PA 362 GG11269-PA 1..362 1..363 1452 78 Plus
Dere\GG23647-PA 851 GG23647-PA 508..658 38..185 438 51 Plus
Dere\GG23647-PA 851 GG23647-PA 508..662 209..358 376 47.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18669-PA 858 GH18669-PA 515..660 43..185 435 51.4 Plus
Dgri\GH18669-PA 858 GH18669-PA 514..661 213..355 362 45.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG13609-PA 364 CG13609-PA 1..364 1..364 1913 100 Plus
MED25-PA 863 CG12254-PA 503..744 31..265 435 37.6 Plus
MED25-PA 863 CG12254-PA 479..668 171..355 374 41.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24180-PA 854 GI24180-PA 519..669 38..185 435 50.3 Plus
Dmoj\GI24180-PA 854 GI24180-PA 518..670 208..355 367 44.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23418-PA 861 GL23418-PA 513..658 43..185 429 52.7 Plus
Dper\GL23418-PA 861 GL23418-PA 510..662 211..358 363 46.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26511-PA 859 GA26511-PA 510..655 43..185 429 52.7 Plus
Dpse\GA26511-PA 859 GA26511-PA 507..659 211..358 363 46.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26574-PA 368 GM26574-PA 1..368 1..363 1673 89.4 Plus
Dsec\GM17687-PA 856 GM17687-PA 515..660 43..185 436 52.1 Plus
Dsec\GM17687-PA 856 GM17687-PA 512..664 211..358 371 47.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21078-PA 365 GD21078-PA 1..365 1..363 1687 91 Plus
Dsim\GD19330-PA 602 GD19330-PA 404..549 43..185 435 52.1 Plus
Dsim\GD19330-PA 602 GD19330-PA 401..553 211..358 367 47.1 Plus
Dsim\GD19329-PA 251 GD19329-PA 2..57 133..185 171 51.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10527-PA 860 GJ10527-PA 523..673 38..185 427 50.3 Plus
Dvir\GJ10527-PA 860 GJ10527-PA 523..674 209..355 367 45.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12965-PA 892 GK12965-PA 546..691 43..185 444 53.4 Plus
Dwil\GK12965-PA 892 GK12965-PA 543..694 211..357 372 47.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23461-PA 363 GE23461-PA 1..363 1..363 1371 73.9 Plus
Dyak\GE25639-PA 855 GE25639-PA 517..662 43..185 437 52.1 Plus
Dyak\GE11214-PA 476 GE11214-PA 136..281 43..185 435 52.1 Plus
Dyak\GE11214-PA 476 GE11214-PA 133..285 211..358 375 47.1 Plus
Dyak\GE25639-PA 855 GE25639-PA 514..666 211..358 374 47.1 Plus