Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
IP10839.complete Sequence
1158 bp (1158 high quality bases) assembled on 2006-09-27
GenBank Submission: BT029083
> IP10839.complete
ATTACAAGCAAACGGTCGTTTTGAGCTAAATAAGTTAAAACAATTAAAAA
ATGAGTTCCAAAAAGAATATAACTCCACCAAACAATTCAGCCGATAAGGA
AACGGATCGCAAAATCCCCGAAGAGTCTCTATCAATCACTAACCATCCGG
GGGCCACATCAACGCCAACTTATATGACACGCAAACGGCAGAGGCTTTTA
TCTCTCCAGATGGATTCTGCATTGTCATTGTCATTGGTGGATCGAGTTCC
ACAAACATTCGAGGATATTCGTGGACGAAAGGGTATTCGTGATGCCAGTT
CTCCAAAAACTGGTAAACTCCCAAGGACTAAAGCCCGGAATATACCGAAA
ACACCAGCGCGTGTTTCCCCAAGTATAAATCATGGTAGGAATTCTGCTAA
GCCAAAGACCCCAGCTAAAAAGAAGACTACGGAGAAAACTCCTGCGAAGA
CGCCCACAGACACGCCGAAAATATCGCCAAAAAATACGCGACAAATATCG
CCGAACAAGTCGCCAAAAACTTTCTCGATGATGCAAAATGTTCCAGCAAA
AAAATCACCAATAAAATCATTAATAAAGAAGCCGAAAACGCCAGCAGTGA
AATCACCAATTGAACCCATTATATTACCAACAGAGTCCCAATTGAAATCT
CCGATAAAGTTATCAATTTCGCCAACGAAATCATCAATGATGTCAACGAT
TTTGACAAAGCAGTCGGTGAAGTCCGAAAAGAATTCCCCTGAAGCCCATT
TCTCTGGAGAAGTAACCAATAAGGAAAATGCCGCTGAAGAAGATATTTCG
GAGCCACCTTCAAAACAGCCTCGTCTACATATTTTGCAAGTCAATTTGGG
GTCCCCATTCGCAATGACGCACAGCAAAAAACTGAAAGTAATTGCAGTAG
ATTCCAATGATGAAAATCAGGAAGCAAAAGAAGCACCTCCTGACAATTTA
AGCGAAATCAACACAAGTGAGGAAATGAAGTCCTTCGAAATCAAAAATTC
TTTTAAAAATGAGATAGAAAAATCGGACAAAAATTGTTTTATTTCGTAAG
GTTATCAAAGCTTTACTAAAAATAAATATGATTTGAAGCGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
IP10839.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:14:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18518-RA | 1090 | CG18518-RA | 1..1090 | 1..1090 | 5450 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:34:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 15833325..15834414 | 1090..1 | 5405 | 99.7 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:03:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:34:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15834566..15835658 | 1093..1 | 5465 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:08:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15834566..15835658 | 1093..1 | 5465 | 100 | Minus |
Blast to na_te.dros performed 2019-03-16 14:34:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tabor | 7345 | Tabor TABOR 7345bp | 6631..6752 | 468..588 | 112 | 55.7 | Plus |
IP10839.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:34:53 Download gff for
IP10839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 15833325..15834414 | 1..1090 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:47:23 Download gff for
IP10839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18518-RA | 1..999 | 51..1049 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:24:32 Download gff for
IP10839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18518-RA | 1..999 | 51..1049 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:27:36 Download gff for
IP10839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18518-RA | 1..999 | 51..1049 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:43:51 Download gff for
IP10839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18518-RA | 1..999 | 51..1049 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:33:18 Download gff for
IP10839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18518-RA | 1..999 | 51..1049 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:52:45 Download gff for
IP10839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18518-RA | 1..999 | 51..1049 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:24:32 Download gff for
IP10839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18518-RA | 1..1090 | 1..1090 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:36 Download gff for
IP10839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18518-RA | 1..1090 | 1..1090 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:43:52 Download gff for
IP10839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18518-RA | 1..999 | 51..1049 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:18 Download gff for
IP10839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18518-RA | 1..1090 | 1..1090 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:34:53 Download gff for
IP10839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15834569..15835658 | 1..1090 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:34:53 Download gff for
IP10839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15834569..15835658 | 1..1090 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:34:53 Download gff for
IP10839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15834569..15835658 | 1..1090 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:36 Download gff for
IP10839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15834569..15835658 | 1..1090 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:52:09 Download gff for
IP10839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15834569..15835658 | 1..1090 | 100 | | Minus |
IP10839.hyp Sequence
Translation from 50 to 1048
> IP10839.hyp
MSSKKNITPPNNSADKETDRKIPEESLSITNHPGATSTPTYMTRKRQRLL
SLQMDSALSLSLVDRVPQTFEDIRGRKGIRDASSPKTGKLPRTKARNIPK
TPARVSPSINHGRNSAKPKTPAKKKTTEKTPAKTPTDTPKISPKNTRQIS
PNKSPKTFSMMQNVPAKKSPIKSLIKKPKTPAVKSPIEPIILPTESQLKS
PIKLSISPTKSSMMSTILTKQSVKSEKNSPEAHFSGEVTNKENAAEEDIS
EPPSKQPRLHILQVNLGSPFAMTHSKKLKVIAVDSNDENQEAKEAPPDNL
SEINTSEEMKSFEIKNSFKNEIEKSDKNCFIS*
IP10839.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:32:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18518-PA | 332 | CG18518-PA | 1..332 | 1..332 | 1684 | 100 | Plus |
IP10839.pep Sequence
Translation from 50 to 1048
> IP10839.pep
MSSKKNITPPNNSADKETDRKIPEESLSITNHPGATSTPTYMTRKRQRLL
SLQMDSALSLSLVDRVPQTFEDIRGRKGIRDASSPKTGKLPRTKARNIPK
TPARVSPSINHGRNSAKPKTPAKKKTTEKTPAKTPTDTPKISPKNTRQIS
PNKSPKTFSMMQNVPAKKSPIKSLIKKPKTPAVKSPIEPIILPTESQLKS
PIKLSISPTKSSMMSTILTKQSVKSEKNSPEAHFSGEVTNKENAAEEDIS
EPPSKQPRLHILQVNLGSPFAMTHSKKLKVIAVDSNDENQEAKEAPPDNL
SEINTSEEMKSFEIKNSFKNEIEKSDKNCFIS*
IP10839.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:13:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG24191-PA | 310 | GG24191-PA | 1..310 | 1..332 | 612 | 48.4 | Plus |
Dere\GG23046-PA | 322 | GG23046-PA | 1..322 | 1..332 | 587 | 49.9 | Plus |
Dere\GG21928-PA | 285 | GG21928-PA | 1..285 | 1..332 | 444 | 44.4 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18518-PA | 332 | CG18518-PA | 1..332 | 1..332 | 1684 | 100 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:13:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM17930-PA | 295 | GM17930-PA | 1..292 | 1..309 | 924 | 67.5 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:13:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE19386-PA | 357 | GE19386-PA | 1..357 | 1..332 | 717 | 53.9 | Plus |