Clone IP10839 Report

Search the DGRC for IP10839

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:108
Well:39
Vector:pOT2
Associated Gene/TranscriptCG18518-RA
Protein status:IP10839.pep: gold
Preliminary Size:999
Sequenced Size:1158

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18518 2005-01-01 Successful iPCR screen
CG18518 2008-04-29 Release 5.5 accounting
CG18518 2008-08-15 Release 5.9 accounting
CG18518 2008-12-18 5.12 accounting

Clone Sequence Records

IP10839.complete Sequence

1158 bp (1158 high quality bases) assembled on 2006-09-27

GenBank Submission: BT029083

> IP10839.complete
ATTACAAGCAAACGGTCGTTTTGAGCTAAATAAGTTAAAACAATTAAAAA
ATGAGTTCCAAAAAGAATATAACTCCACCAAACAATTCAGCCGATAAGGA
AACGGATCGCAAAATCCCCGAAGAGTCTCTATCAATCACTAACCATCCGG
GGGCCACATCAACGCCAACTTATATGACACGCAAACGGCAGAGGCTTTTA
TCTCTCCAGATGGATTCTGCATTGTCATTGTCATTGGTGGATCGAGTTCC
ACAAACATTCGAGGATATTCGTGGACGAAAGGGTATTCGTGATGCCAGTT
CTCCAAAAACTGGTAAACTCCCAAGGACTAAAGCCCGGAATATACCGAAA
ACACCAGCGCGTGTTTCCCCAAGTATAAATCATGGTAGGAATTCTGCTAA
GCCAAAGACCCCAGCTAAAAAGAAGACTACGGAGAAAACTCCTGCGAAGA
CGCCCACAGACACGCCGAAAATATCGCCAAAAAATACGCGACAAATATCG
CCGAACAAGTCGCCAAAAACTTTCTCGATGATGCAAAATGTTCCAGCAAA
AAAATCACCAATAAAATCATTAATAAAGAAGCCGAAAACGCCAGCAGTGA
AATCACCAATTGAACCCATTATATTACCAACAGAGTCCCAATTGAAATCT
CCGATAAAGTTATCAATTTCGCCAACGAAATCATCAATGATGTCAACGAT
TTTGACAAAGCAGTCGGTGAAGTCCGAAAAGAATTCCCCTGAAGCCCATT
TCTCTGGAGAAGTAACCAATAAGGAAAATGCCGCTGAAGAAGATATTTCG
GAGCCACCTTCAAAACAGCCTCGTCTACATATTTTGCAAGTCAATTTGGG
GTCCCCATTCGCAATGACGCACAGCAAAAAACTGAAAGTAATTGCAGTAG
ATTCCAATGATGAAAATCAGGAAGCAAAAGAAGCACCTCCTGACAATTTA
AGCGAAATCAACACAAGTGAGGAAATGAAGTCCTTCGAAATCAAAAATTC
TTTTAAAAATGAGATAGAAAAATCGGACAAAAATTGTTTTATTTCGTAAG
GTTATCAAAGCTTTACTAAAAATAAATATGATTTGAAGCGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA

IP10839.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG18518-RA 1090 CG18518-RA 1..1090 1..1090 5450 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 15833325..15834414 1090..1 5405 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:03:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15834566..15835658 1093..1 5465 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15834566..15835658 1093..1 5465 100 Minus
Blast to na_te.dros performed 2019-03-16 14:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 6631..6752 468..588 112 55.7 Plus

IP10839.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:34:53 Download gff for IP10839.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 15833325..15834414 1..1090 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:47:23 Download gff for IP10839.complete
Subject Subject Range Query Range Percent Splice Strand
CG18518-RA 1..999 51..1049 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:24:32 Download gff for IP10839.complete
Subject Subject Range Query Range Percent Splice Strand
CG18518-RA 1..999 51..1049 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:27:36 Download gff for IP10839.complete
Subject Subject Range Query Range Percent Splice Strand
CG18518-RA 1..999 51..1049 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:43:51 Download gff for IP10839.complete
Subject Subject Range Query Range Percent Splice Strand
CG18518-RA 1..999 51..1049 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:33:18 Download gff for IP10839.complete
Subject Subject Range Query Range Percent Splice Strand
CG18518-RA 1..999 51..1049 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:52:45 Download gff for IP10839.complete
Subject Subject Range Query Range Percent Splice Strand
CG18518-RA 1..999 51..1049 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:24:32 Download gff for IP10839.complete
Subject Subject Range Query Range Percent Splice Strand
CG18518-RA 1..1090 1..1090 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:36 Download gff for IP10839.complete
Subject Subject Range Query Range Percent Splice Strand
CG18518-RA 1..1090 1..1090 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:43:52 Download gff for IP10839.complete
Subject Subject Range Query Range Percent Splice Strand
CG18518-RA 1..999 51..1049 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:18 Download gff for IP10839.complete
Subject Subject Range Query Range Percent Splice Strand
CG18518-RA 1..1090 1..1090 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:34:53 Download gff for IP10839.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15834569..15835658 1..1090 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:34:53 Download gff for IP10839.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15834569..15835658 1..1090 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:34:53 Download gff for IP10839.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15834569..15835658 1..1090 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:36 Download gff for IP10839.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15834569..15835658 1..1090 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:52:09 Download gff for IP10839.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15834569..15835658 1..1090 100   Minus

IP10839.hyp Sequence

Translation from 50 to 1048

> IP10839.hyp
MSSKKNITPPNNSADKETDRKIPEESLSITNHPGATSTPTYMTRKRQRLL
SLQMDSALSLSLVDRVPQTFEDIRGRKGIRDASSPKTGKLPRTKARNIPK
TPARVSPSINHGRNSAKPKTPAKKKTTEKTPAKTPTDTPKISPKNTRQIS
PNKSPKTFSMMQNVPAKKSPIKSLIKKPKTPAVKSPIEPIILPTESQLKS
PIKLSISPTKSSMMSTILTKQSVKSEKNSPEAHFSGEVTNKENAAEEDIS
EPPSKQPRLHILQVNLGSPFAMTHSKKLKVIAVDSNDENQEAKEAPPDNL
SEINTSEEMKSFEIKNSFKNEIEKSDKNCFIS*

IP10839.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG18518-PA 332 CG18518-PA 1..332 1..332 1684 100 Plus

IP10839.pep Sequence

Translation from 50 to 1048

> IP10839.pep
MSSKKNITPPNNSADKETDRKIPEESLSITNHPGATSTPTYMTRKRQRLL
SLQMDSALSLSLVDRVPQTFEDIRGRKGIRDASSPKTGKLPRTKARNIPK
TPARVSPSINHGRNSAKPKTPAKKKTTEKTPAKTPTDTPKISPKNTRQIS
PNKSPKTFSMMQNVPAKKSPIKSLIKKPKTPAVKSPIEPIILPTESQLKS
PIKLSISPTKSSMMSTILTKQSVKSEKNSPEAHFSGEVTNKENAAEEDIS
EPPSKQPRLHILQVNLGSPFAMTHSKKLKVIAVDSNDENQEAKEAPPDNL
SEINTSEEMKSFEIKNSFKNEIEKSDKNCFIS*

IP10839.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24191-PA 310 GG24191-PA 1..310 1..332 612 48.4 Plus
Dere\GG23046-PA 322 GG23046-PA 1..322 1..332 587 49.9 Plus
Dere\GG21928-PA 285 GG21928-PA 1..285 1..332 444 44.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG18518-PA 332 CG18518-PA 1..332 1..332 1684 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:13:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17930-PA 295 GM17930-PA 1..292 1..309 924 67.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:13:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19386-PA 357 GE19386-PA 1..357 1..332 717 53.9 Plus