Clone IP10872 Report

Search the DGRC for IP10872

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:108
Well:72
Vector:pOT2
Associated Gene/TranscriptCG34402-RD
Protein status:IP10872.pep: gold
Preliminary Size:1056
Sequenced Size:1980

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31218 2005-01-01 Successful iPCR screen
CG34402 2008-04-29 Release 5.5 accounting
CG34402 2008-08-15 Release 5.9 accounting
CG34402 2008-12-18 5.12 accounting

Clone Sequence Records

IP10872.complete Sequence

1980 bp (1980 high quality bases) assembled on 2005-05-04

GenBank Submission: BT023111

> IP10872.complete
ATTTATAGGGAGGCCGGCTGACCAACGAGCCAGCCCCAAAAGTATCGGCC
AATAAATTTTAGACATCATTACGCATCTGCTCTGGCCAATGCAAGCGGCC
TGGGGAATTCCACCTCTCTCTCCTCGCCACTCCTCCTCATCCAATGCCGA
TTGCAATTTCGTGACAGGTGCTTGGACAGCGTGGACATCTTTCCCTATTT
GCGGGAGCCCGTCATCGAGAACGCAACCCTGGCGGCGGACACCTTCTGCC
AGCACAGCCGGGAGCGCAGTGCCACGCCTATTTATAGCGCGGGTCGATTG
CTCGGACTGCGCCTCCGGTTCCAGCAGCCGCCCACCGACCTGGCCAGCTG
GAACTTGACCCTCAACGCCAGCTATCGATTTCTAAAGCGAGAAAACTTCC
GGACGGATGGTCGATTAGTTCCGCACAGCTTCTGTGACTTTTACTTCTTC
GCCAGCTTGTCCGGCGAGGAGGCCAATATGGGCCAAGGCTACTTCCACTC
GCCCCAGTTTCCAGCCCACTATCCGGCGCACATTAAGTGTGCCTACAAGT
TCATTGGTCGGCCGGACACGCACGTGGAGATCCTCTTCGAAGAACTGCAG
CTGCCGCCTGTGGTCAGTGGAGGCTGCCAGTTGGATGCACTTACTCTGTT
CGACGCAGAATCCGCTCACATGAACTCGGTCATCGATGTCATCTGCTCCA
GCCGACCCACACGCCGTCTGGTGAGCACTGGTCCAGATCTGCTGCTTGAG
TTTAATGCCAGCTCCAATCGCACGGCCAAAGGATTTCGTGGAAAGTACAA
GTTCGTGTCGAATGATCTGGGAGTACCGAACGCCTCTGTCCCACCTCCGG
CCGTTTTGGAGGCAGCCAGTGTGGTGGTTAAGCAGGAAAAGCTCCAGCAG
GAGCAGGCTTCTGCCGCCAAGGAGAACAGTCTGATGTCGGATGTGGAACT
ATCGAAGCCCGGACGCTCATTTGAACAATGCAAACAGACTTTCGACTCAC
GAGTAAATAAATCGGGAATATTTGACTCAAATCAGCTGTTGCTCGCCAAA
CACGCGCTCGGCGGCGTTGTAATTGGCGGCTCGAGAGTCTTGCAATGCCG
TTACGAATTTGAAGCTCAGGCGCCAGAACGGGTGCAGATTCGATTCCACG
ACTTCAACGTGCCTACGGAGCACGAGAATTCCACGGGTTGCCAGCCGGGC
GATGCGCTGCACGTGGTCACCGAGCTGCGTGGACGGTACGAGACGCAGGA
ACTGCTCTGCGGCGCCTTCCTGCCCAAGCCACTGATGTCCAGTGGACAGC
AGCTACACCTTCAGTTTGTCGGAAAATATCCGCCCACAATGACGAACAAG
GTGCAATACTACGGATTTCGCGCGGAGTACCGTTTCTTAACCAATTTTGG
TATCATGTCGGGGATTCAAAAGGAAGGATGTTCCTTTGTCTACAATAGCA
GCGAGCGAATAAGTGGCCTATTTCACTCTCCGAATTTTCCCGGATATTAC
CTGGAAAATGTTGTGTGCAATTATTATTTCTACGGAGCAAGTGACGAAAG
AGTTGTGCTTCACTTCACATATTTCGATATCGAGGGCATTGGAAGTTGTG
ACCACCAAACCGCCAGCGATTACATCGAGTTTTCCAATTTCATGAGCACG
GATCGAAAGTTCAGCAGATACTGCGGAAAGCTTCCCGATTTTGAAATGCG
TTCTGATGGACGTTTCTTTCGAGTCACCTTGCATTCCAATGATCGCTTTG
TGGCCATCGGATTCCGCGCCCTGTACACCTTTGAAACCGTTTCAGTGAAT
AATTCCATCACCGATCTTCGGGATAATGCCTCCATGCAGAGTTTCGTCTC
AACAGCGTCAACTCAGCCGGTTGCAAATGTAAACAAATTAATTGCATGTA
TCTTATGCACTTATAAAGCATACCAATCTTATGTTTAAAATATAGAGACA
AAATATTTCGAAAAAAAAAAAAAAAAAAAA

IP10872.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:24:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG34402-RD 1963 CG34402-RD 1..1963 1..1963 9815 100 Plus
CG34402-RC 2113 CG34402-RC 317..2113 167..1963 8985 100 Plus
Cyp9f2-RA 1976 Cyp9f2-RA 48..94 1963..1917 190 93.6 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8214871..8215454 390..973 2920 100 Plus
chr3R 27901430 chr3R 8227178..8227598 973..1393 2105 100 Plus
chr3R 27901430 chr3R 8214236..8214626 1..391 1940 99.7 Plus
chr3R 27901430 chr3R 8227924..8228290 1594..1960 1820 99.7 Plus
chr3R 27901430 chr3R 8227668..8227869 1394..1595 1010 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:03:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:33:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12389485..12390068 390..973 2920 100 Plus
3R 32079331 3R 12401790..12402210 973..1393 2105 100 Plus
3R 32079331 3R 12388850..12389240 1..391 1955 100 Plus
3R 32079331 3R 12402536..12402905 1594..1963 1850 100 Plus
3R 32079331 3R 12402280..12402481 1394..1595 1010 100 Plus
3R 32079331 3R 12406148..12406194 1917..1963 190 93.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 12130316..12130899 390..973 2920 100 Plus
3R 31820162 3R 12142621..12143041 973..1393 2105 100 Plus
3R 31820162 3R 12129681..12130071 1..391 1955 100 Plus
3R 31820162 3R 12143367..12143736 1594..1963 1850 100 Plus
3R 31820162 3R 12143111..12143312 1394..1595 1010 100 Plus
3R 31820162 3R 12146979..12147025 1917..1963 190 93.6 Plus
Blast to na_te.dros performed on 2019-03-16 08:33:45 has no hits.

IP10872.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:34:38 Download gff for IP10872.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8214236..8214626 1..391 99 -> Plus
chr3R 8214873..8215454 392..973 100 -> Plus
chr3R 8227179..8227598 974..1393 100 -> Plus
chr3R 8227668..8227869 1394..1595 100 -> Plus
chr3R 8227926..8228290 1596..1960 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:23:25 Download gff for IP10872.complete
Subject Subject Range Query Range Percent Splice Strand
CG34402-RC 310..2088 160..1938 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:43:43 Download gff for IP10872.complete
Subject Subject Range Query Range Percent Splice Strand
CG34402-RC 310..2088 160..1938 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:51:24 Download gff for IP10872.complete
Subject Subject Range Query Range Percent Splice Strand
CG34402-RC 310..2088 160..1938 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:24:52 Download gff for IP10872.complete
Subject Subject Range Query Range Percent Splice Strand
CG34402-RC 310..2088 160..1938 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:43:45 Download gff for IP10872.complete
Subject Subject Range Query Range Percent Splice Strand
CG34402-RC 310..2088 160..1938 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:23:24 Download gff for IP10872.complete
Subject Subject Range Query Range Percent Splice Strand
CG34402-RD 1..1960 1..1960 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:43:43 Download gff for IP10872.complete
Subject Subject Range Query Range Percent Splice Strand
CG34402-RD 1..1960 1..1960 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:24 Download gff for IP10872.complete
Subject Subject Range Query Range Percent Splice Strand
CG34402-RD 1..1960 1..1960 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:24:53 Download gff for IP10872.complete
Subject Subject Range Query Range Percent Splice Strand
CG34402-RD 1..1960 1..1960 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:43:45 Download gff for IP10872.complete
Subject Subject Range Query Range Percent Splice Strand
CG34402-RD 1..1960 1..1960 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:34:38 Download gff for IP10872.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12388850..12389240 1..391 100 -> Plus
3R 12389487..12390068 392..973 100 -> Plus
3R 12401791..12402210 974..1393 100 -> Plus
3R 12402280..12402481 1394..1595 100 -> Plus
3R 12402538..12402902 1596..1960 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:34:38 Download gff for IP10872.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12388850..12389240 1..391 100 -> Plus
3R 12389487..12390068 392..973 100 -> Plus
3R 12401791..12402210 974..1393 100 -> Plus
3R 12402280..12402481 1394..1595 100 -> Plus
3R 12402538..12402902 1596..1960 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:34:38 Download gff for IP10872.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12388850..12389240 1..391 100 -> Plus
3R 12389487..12390068 392..973 100 -> Plus
3R 12401791..12402210 974..1393 100 -> Plus
3R 12402280..12402481 1394..1595 100 -> Plus
3R 12402538..12402902 1596..1960 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:24 Download gff for IP10872.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8228002..8228203 1394..1595 100 -> Plus
arm_3R 8214572..8214962 1..391 100 -> Plus
arm_3R 8215209..8215790 392..973 100 -> Plus
arm_3R 8227513..8227932 974..1393 100 -> Plus
arm_3R 8228260..8228624 1596..1960 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:05:07 Download gff for IP10872.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12129681..12130071 1..391 100 -> Plus
3R 12130318..12130899 392..973 100 -> Plus
3R 12142622..12143041 974..1393 100 -> Plus
3R 12143111..12143312 1394..1595 100 -> Plus
3R 12143369..12143733 1596..1960 100   Plus

IP10872.pep Sequence

Translation from 477 to 1937

> IP10872.pep
MGQGYFHSPQFPAHYPAHIKCAYKFIGRPDTHVEILFEELQLPPVVSGGC
QLDALTLFDAESAHMNSVIDVICSSRPTRRLVSTGPDLLLEFNASSNRTA
KGFRGKYKFVSNDLGVPNASVPPPAVLEAASVVVKQEKLQQEQASAAKEN
SLMSDVELSKPGRSFEQCKQTFDSRVNKSGIFDSNQLLLAKHALGGVVIG
GSRVLQCRYEFEAQAPERVQIRFHDFNVPTEHENSTGCQPGDALHVVTEL
RGRYETQELLCGAFLPKPLMSSGQQLHLQFVGKYPPTMTNKVQYYGFRAE
YRFLTNFGIMSGIQKEGCSFVYNSSERISGLFHSPNFPGYYLENVVCNYY
FYGASDERVVLHFTYFDIEGIGSCDHQTASDYIEFSNFMSTDRKFSRYCG
KLPDFEMRSDGRFFRVTLHSNDRFVAIGFRALYTFETVSVNNSITDLRDN
ASMQSFVSTASTQPVANVNKLIACILCTYKAYQSYV*

IP10872.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17951-PA 427 GF17951-PA 110..419 1..312 1294 76.8 Plus
Dana\GF23226-PA 932 GF23226-PA 342..615 207..466 235 29.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18850-PA 189 GG18850-PA 7..189 304..486 892 89.1 Plus
Dere\GG16488-PA 325 GG16488-PA 106..270 1..165 782 89.1 Plus
Dere\GG23097-PA 926 GG23097-PA 184..577 4..438 244 23.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17522-PA 262 GH17522-PA 11..261 166..415 1047 75.6 Plus
Dgri\GH20613-PA 869 GH20613-PA 11..248 166..402 955 73 Plus
Dgri\GH20602-PA 411 GH20602-PA 121..274 1..164 586 67.7 Plus
Dgri\GH13954-PA 1009 GH13954-PA 417..663 207..438 220 29 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG34402-PE 682 CG34402-PE 197..682 1..486 2561 100 Plus
CG34402-PD 486 CG34402-PD 1..486 1..486 2561 100 Plus
CG34402-PC 695 CG34402-PC 210..695 1..486 2561 100 Plus
CG42613-PF 845 CG42613-PF 92..510 4..454 268 24.5 Plus
CG42613-PG 1051 CG42613-PG 402..820 4..454 268 24.5 Plus
CG42613-PH 1155 CG42613-PH 402..820 4..454 268 24.5 Plus
CG42613-PE 1188 CG42613-PE 435..853 4..454 268 24.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23200-PA 214 GI23200-PA 1..214 270..484 794 70.5 Plus
Dmoj\GI23199-PA 520 GI23199-PA 335..474 1..152 578 72.4 Plus
Dmoj\GI24841-PA 951 GI24841-PA 360..606 207..438 220 29.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27307-PA 302 GL27307-PA 111..280 1..165 652 75.3 Plus
Dper\GL23444-PA 854 GL23444-PA 33..505 3..438 216 24.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18705-PA 612 GA18705-PA 1..243 247..470 876 68.4 Plus
Dpse\GA16101-PA 302 GA16101-PA 111..280 1..165 649 75.3 Plus
Dpse\GA30151-PB 1221 GA30151-PB 630..877 207..438 208 28.6 Plus
Dpse\GA30151-PA 1186 GA30151-PA 595..842 207..438 207 28.6 Plus
Dpse\GA30151-PD 1124 GA30151-PD 595..842 207..438 207 28.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:36:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19553-PA 344 GM19553-PA 152..313 1..165 821 94.5 Plus
Dsec\GM24025-PA 298 GM24025-PA 106..267 1..165 818 94.5 Plus
Dsec\GM13643-PA 855 GM13643-PA 331..496 207..369 169 30.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18826-PA 217 GD18826-PA 1..217 270..486 1102 94 Plus
Dsim\GD18825-PA 344 GD18825-PA 120..281 1..165 818 93.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22861-PA 216 GJ22861-PA 1..195 270..461 822 78.6 Plus
Dvir\GJ22860-PA 269 GJ22860-PA 110..241 1..136 577 77.2 Plus
Dvir\GJ24485-PA 922 GJ24485-PA 331..577 207..438 218 29.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11882-PA 269 GK11882-PA 111..260 3..165 605 71.8 Plus
Dwil\GK22748-PA 1003 GK22748-PA 419..665 207..438 218 29.1 Plus
Dwil\GK22748-PA 1003 GK22748-PA 99..310 144..368 154 27.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25571-PA 924 GE25571-PA 184..577 4..438 244 23.9 Plus

IP10872.hyp Sequence

Translation from 477 to 1937

> IP10872.hyp
MGQGYFHSPQFPAHYPAHIKCAYKFIGRPDTHVEILFEELQLPPVVSGGC
QLDALTLFDAESAHMNSVIDVICSSRPTRRLVSTGPDLLLEFNASSNRTA
KGFRGKYKFVSNDLGVPNASVPPPAVLEAASVVVKQEKLQQEQASAAKEN
SLMSDVELSKPGRSFEQCKQTFDSRVNKSGIFDSNQLLLAKHALGGVVIG
GSRVLQCRYEFEAQAPERVQIRFHDFNVPTEHENSTGCQPGDALHVVTEL
RGRYETQELLCGAFLPKPLMSSGQQLHLQFVGKYPPTMTNKVQYYGFRAE
YRFLTNFGIMSGIQKEGCSFVYNSSERISGLFHSPNFPGYYLENVVCNYY
FYGASDERVVLHFTYFDIEGIGSCDHQTASDYIEFSNFMSTDRKFSRYCG
KLPDFEMRSDGRFFRVTLHSNDRFVAIGFRALYTFETVSVNNSITDLRDN
ASMQSFVSTASTQPVANVNKLIACILCTYKAYQSYV*

IP10872.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG34402-PE 682 CG34402-PE 197..682 1..486 2561 100 Plus
CG34402-PD 486 CG34402-PD 1..486 1..486 2561 100 Plus
CG34402-PC 695 CG34402-PC 210..695 1..486 2561 100 Plus
CG42613-PF 845 CG42613-PF 92..510 4..454 268 24.5 Plus
CG42613-PG 1051 CG42613-PG 402..820 4..454 268 24.5 Plus