Clone IP10875 Report

Search the DGRC for IP10875

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:108
Well:75
Vector:pOT2
Associated Gene/TranscriptTpl94D-RA
Protein status:IP10875.pep: gold
Preliminary Size:1093
Sequenced Size:1530

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31281 2005-01-01 Successful iPCR screen

Clone Sequence Records

IP10875.complete Sequence

1530 bp (1522 high quality bases) assembled on 2009-09-15

GenBank Submission: BT025106.2

> IP10875.complete
AAAAGCAGTTTTTTTTTTTTTTTTTTTTTCCATAAGGAATCATACTTTTA
CATTTATTATATAACCAAATCTCAAGATTTCTGCAATGGGTAGCGTTTTA
AGTAGATCAGATCAGCCTAGAGATTCTGTCGCCTACAGAAACTTCCTGAC
AGTCTACAGGAATCAGCACAAACAAATGAGTTCCAATGATGCACTTTTGA
GTGCATCACGTGAATGGGGAACTTTATCGCAGGCTCAGCGGAATCGATAT
GCTAACATGAAGGACTCCCCCAAGCGGGGCACAAAAAACATAACGGAGAA
TGCGGCTGCTCGTAGAAAGATTACTAAAAAGAATTCCCGGTCGAAGAGAA
TTTCTCAGCGGCGGATTCAAGATAAGGGGTCTGCTTATAAGCCGCTAACC
CTCAACAGATCTTACGTAATACGGAAGAGTTTGGTTCCCTCAAGAGGCTT
TCTAAACTTAGTGCAGTTCTTCCAAGAGATCCATAGCGAAATGCCAAGAT
CGTTGGCCGTGAAAGAGGCTGTTAGTTCCTGGTGCGCTATGAATGCGGAT
CAGCGTGGCATTTTCATATCAGACTTATAGTCATCATGTCACCCACTTCA
CTCAATCAATGCCCCCCACGCATGGCCGCCTGTCACGAGAGAATCCAATT
TCGAATCAAGCTTAGCCAAGCGGTTACACAATCGCCGTAAGTTCCGCGCC
CAAACACATGTATTCCATCACGCAACCAGCGGCACGAAATTTCAGAGCAA
CAGTATTAAAATTATAAGCAGGAGGAGCAGGAATAGAAACAGAAACAGAA
CCACAATCATTCACATTTAAATTAACATTTCCCGCCGACGATTATCCTAA
TTGCGAGCTGGCCTTAGCCTAGTCGCTCGTCCTGGCCAAAGATGTTGAAT
ATGCGCCGCTTTCCATTCACTATTTACATTCATGTCGGTGACACGCGGCA
CGCGAGATTCTGCTAAAAAATGGATTCAATGTAACGCAAAACAAGCGAGG
CCTCATAAAAATGAAATGCGGATAAATCAAATTAGCATTTTGTACAAATA
GCAAAGCATTAGCTCGCGTACGGCGGCAATTTGTAATGTCAGAAGGCCGC
AAGGAGTCTTGAGGAGAGGGTCCTGGAAAAAGGACATGCAAGCAGTTCGC
TTTGGAGGTCATGCCCAAAAGTCAAAAAGATTGTATAATTACTCGGGAAC
CATTTCGGTGAGACTTCTTCTTCAGATGTTGCAAGACCACAATCCCGAAA
TGAGAATTAAAACTAATGACACAAGCCGCAGCCAGACATCCCGATCCAAT
TAGGCTCCTCCTGTGGCCAGGATAACCATTCTAGGGCTACAGTAGTATCA
GGTCAAATTCACTGCTCCGACTAGCAAATGTTCGTGTTTTACTACGGCGA
CTTTATTGCAACACAATGGTATTTTAAGTGGCAGCAATAAAAATGATTTA
TTACCCCACAGAGGCGACCATCGAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

IP10875.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
Tpl94D.b 1563 Tpl94D.b 4..1478 1..1476 7340 99.9 Plus
Tpl94D-RA 1094 Tpl94D-RA 4..1094 1..1092 5420 99.9 Plus
Tpl94D.a 1090 Tpl94D.a 3..1090 1..1092 5350 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 18790086..18791300 259..1473 6030 99.8 Plus
chr3R 27901430 chr3R 18789761..18790018 1..259 1215 98.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:03:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22966628..22967845 259..1476 6090 100 Plus
3R 32079331 3R 22966311..22966560 10..259 1250 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 22707459..22708676 259..1476 6090 100 Plus
3R 31820162 3R 22707134..22707391 1..259 1255 99.6 Plus
Blast to na_te.dros performed on 2019-03-16 17:55:04 has no hits.

IP10875.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:55:50 Download gff for IP10875.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 18789796..18790018 37..259 99 -> Plus
chr3R 18790087..18791300 260..1473 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:54:21 Download gff for IP10875.complete
Subject Subject Range Query Range Percent Splice Strand
CG31281-RA 1..495 86..580 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:12:17 Download gff for IP10875.complete
Subject Subject Range Query Range Percent Splice Strand
Tpl94D-RA 1..495 86..580 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:41:39 Download gff for IP10875.complete
Subject Subject Range Query Range Percent Splice Strand
Tpl94D-RA 1..495 86..580 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 16:32:11 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:22:44 Download gff for IP10875.complete
Subject Subject Range Query Range Percent Splice Strand
Tpl94D-RA 1..495 86..580 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-15 12:33:52 Download gff for IP10875.complete
Subject Subject Range Query Range Percent Splice Strand
CG31281-RA 3..1093 1..1092 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:12:17 Download gff for IP10875.complete
Subject Subject Range Query Range Percent Splice Strand
Tpl94D-RA 3..1093 1..1092 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:39 Download gff for IP10875.complete
Subject Subject Range Query Range Percent Splice Strand
Tpl94D-RA 20..1491 1..1473 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:32:11 Download gff for IP10875.complete
Subject Subject Range Query Range Percent Splice Strand
CG31281-RA 31..1093 439..1501 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:22:44 Download gff for IP10875.complete
Subject Subject Range Query Range Percent Splice Strand
Tpl94D-RA 20..1491 1..1473 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:55:50 Download gff for IP10875.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22966303..22966560 1..259 99 -> Plus
3R 22966629..22967842 260..1473 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:55:50 Download gff for IP10875.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22966303..22966560 1..259 99 -> Plus
3R 22966629..22967842 260..1473 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:55:50 Download gff for IP10875.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22966303..22966560 1..259 99 -> Plus
3R 22966629..22967842 260..1473 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:39 Download gff for IP10875.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18792025..18792282 1..259 99 -> Plus
arm_3R 18792351..18793564 260..1473 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:03:15 Download gff for IP10875.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22707134..22707391 1..259 99 -> Plus
3R 22707460..22708673 260..1473 100   Plus

IP10875.pep Sequence

Translation from 85 to 579

> IP10875.pep
MGSVLSRSDQPRDSVAYRNFLTVYRNQHKQMSSNDALLSASREWGTLSQA
QRNRYANMKDSPKRGTKNITENAAARRKITKKNSRSKRISQRRIQDKGSA
YKPLTLNRSYVIRKSLVPSRGFLNLVQFFQEIHSEMPRSLAVKEAVSSWC
AMNADQRGIFISDL*

IP10875.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19889-PA 79 GF19889-PA 1..68 1..67 149 45.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11172-PA 175 GG11172-PA 1..175 1..164 480 54 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
Tpl94D-PA 164 CG31281-PA 1..164 1..164 828 100 Plus
Tpl94D-PB 163 CG31281-PB 1..163 1..164 811 99.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26474-PA 167 GM26474-PA 1..167 1..164 653 77.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20990-PA 167 GD20990-PA 1..167 1..164 651 77.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:01:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10340-PA 187 GE10340-PA 1..187 1..164 416 52.4 Plus

IP10875.hyp Sequence

Translation from 85 to 579

> IP10875.hyp
MGSVLSRSDQPRDSVAYRNFLTVYRNQHKQMSSNDALLSASREWGTLSQA
QRNRYANMKDSPKRGTKNITENAAARRKITKKNSRSKRISQRRIQDKGSA
YKPLTLNRSYVIRKSLVPSRGFLNLVQFFQEIHSEMPRSLAVKEAVSSWC
AMNADQRGIFISDL*

IP10875.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:33:17
Subject Length Description Subject Range Query Range Score Percent Strand
Tpl94D-PA 164 CG31281-PA 1..164 1..164 828 100 Plus
Tpl94D-PB 163 CG31281-PB 1..163 1..164 811 99.4 Plus