Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
IP11147.complete Sequence
1034 bp assembled on 2007-02-12
GenBank Submission: BT030116
> IP11147.complete
TAAAAATTCATTTTCCACAAGAAAAATTCTAAATTTACCGTTATAATGCT
AAAGAGACCTGCGTTAGTTTATCGGTGCCTTCAGACTTCTGTTAAAAGGT
CCTACCATCTAAATGCACATGAACATTTAAGAAAAAAAGAAATTCTCAAG
CCCGAAAGCCAGCCTAGTCAAAAGCATAAGAAATTTGGAGACGGCTCCAT
TGGAGTGATTCATGTGATCAAGAACGAATATTATGGGCTCCCCAATCCCA
TGCACCGAAAATTCCGGGAAGATCTGGAGAAACACCAAGACCGGAGGAAG
GAATCAAACCTTTCGTTAAAGGAAGAAAAGCGTGAAGATCTTGAAAAGAT
GCTAAAGGAATGCCAGAAGCTTGTCAAAGAAATCACCATGCAGGCTAATG
ATGGCGATGTTACGAAGATCTGCAAGGAACTAGCCCAAAAAGAAAAGATG
GACAAGGAAAAAATAAAGAAAAAGTGCCGAGAGCTGGCAGCAAGAGAAAA
ATGTGAAAAGGATAAGCTGAAAAAGAAGTGCAAGAAGTTGCTCAAGAAGG
ATAAGTGCAAGAAAAAAGATACTTGCGAAGAAGAGAAGCCTTGTGAAGAA
GAAGATCCTTGCGAGAAAAAAAGCTGTTGCCCCAAAGATCCTTGCGCTAA
AAAACCCAAGAAAGTTGACCCCTGCAAAAAGAAAGATCCTTGCAAAAAAG
AGGATCCATGCAAAAAGAAGGCTGTAAATTGGAAGAAAAAGTGCAAGGAG
GTTGCGGAGAGGGAGCAATGCAAAAAGCTGGCCGAGAAGAAGAAGTTTAA
GAAAATGATAAAAATATGCAAAAACCTTGCGGCGAAGGAAAAATGCAAAA
AAATGGCCGAAAAAGAGATGTGCAGGAAAAAGGCCAAAAAGGGGAAAAAG
AAGTAAATGGACCGATCAAAACTAGCGCGGACTCATCAAAAAATCAAAAA
TATGGAATTCTTTAACATGTTTGATTGATTTGTGGTTAATAAAAACTTTT
CCCATCTGGCTTTTCAGTTAAAAAAAAAAAAAAA
IP11147.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:06:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
djl-RA | 1264 | djl-RA | 138..1156 | 1..1019 | 5095 | 100 | Plus |
dj.a | 1144 | dj.a | 561..610 | 670..719 | 190 | 92 | Plus |
dj.a | 1144 | dj.a | 522..574 | 667..719 | 190 | 90.5 | Plus |
dj-RB | 1169 | dj-RB | 586..635 | 670..719 | 190 | 92 | Plus |
dj-RB | 1169 | dj-RB | 547..599 | 667..719 | 190 | 90.5 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:28:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 2887067..2887948 | 138..1019 | 4395 | 99.9 | Plus |
chr3R | 27901430 | chr3R | 2886875..2887013 | 1..139 | 695 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:04:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:28:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7061038..7061919 | 138..1019 | 4410 | 100 | Plus |
3R | 32079331 | 3R | 7060846..7060984 | 1..139 | 695 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:01:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 6801869..6802750 | 138..1019 | 4410 | 100 | Plus |
3R | 31820162 | 3R | 6801677..6801815 | 1..139 | 695 | 100 | Plus |
3R | 31820162 | 3R | 6800764..6800813 | 670..719 | 190 | 92 | Plus |
3R | 31820162 | 3R | 6800725..6800777 | 667..719 | 190 | 90.5 | Plus |
Blast to na_te.dros performed on 2019-03-16 09:28:34 has no hits.
IP11147.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:29:10 Download gff for
IP11147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 2886875..2887013 | 1..139 | 100 | -> | Plus |
chr3R | 2887069..2887948 | 140..1019 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:48:17 Download gff for
IP11147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
djl-RA | 1..861 | 46..906 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:07:51 Download gff for
IP11147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
djl-RA | 1..861 | 46..906 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:36:51 Download gff for
IP11147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
djl-RA | 1..861 | 46..906 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:17:59 Download gff for
IP11147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
djl-RA | 1..861 | 46..906 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:10:46 Download gff for
IP11147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
djl-RA | 1..861 | 46..906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:36:50 Download gff for
IP11147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
djl-RA | 80..1098 | 1..1019 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:07:51 Download gff for
IP11147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
djl-RA | 80..1098 | 1..1019 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:36:51 Download gff for
IP11147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
djl-RA | 80..1098 | 1..1019 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:18:01 Download gff for
IP11147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
djl-RA | 1..971 | 46..1016 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:46 Download gff for
IP11147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
djl-RA | 80..1098 | 1..1019 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:29:10 Download gff for
IP11147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7060846..7060984 | 1..139 | 100 | -> | Plus |
3R | 7061040..7061919 | 140..1019 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:29:10 Download gff for
IP11147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7060846..7060984 | 1..139 | 100 | -> | Plus |
3R | 7061040..7061919 | 140..1019 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:29:10 Download gff for
IP11147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7060846..7060984 | 1..139 | 100 | -> | Plus |
3R | 7061040..7061919 | 140..1019 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:36:51 Download gff for
IP11147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2886568..2886706 | 1..139 | 100 | -> | Plus |
arm_3R | 2886762..2887641 | 140..1019 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:40:55 Download gff for
IP11147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6801677..6801815 | 1..139 | 100 | -> | Plus |
3R | 6801871..6802750 | 140..1019 | 100 | | Plus |
IP11147.hyp Sequence
Translation from 45 to 905
> IP11147.hyp
MLKRPALVYRCLQTSVKRSYHLNAHEHLRKKEILKPESQPSQKHKKFGDG
SIGVIHVIKNEYYGLPNPMHRKFREDLEKHQDRRKESNLSLKEEKREDLE
KMLKECQKLVKEITMQANDGDVTKICKELAQKEKMDKEKIKKKCRELAAR
EKCEKDKLKKKCKKLLKKDKCKKKDTCEEEKPCEEEDPCEKKSCCPKDPC
AKKPKKVDPCKKKDPCKKEDPCKKKAVNWKKKCKEVAEREQCKKLAEKKK
FKKMIKICKNLAAKEKCKKMAEKEMCRKKAKKGKKK*
IP11147.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:35:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
djl-PA | 286 | CG1984-PA | 1..286 | 1..286 | 1546 | 100 | Plus |
dj-PA | 248 | CG1980-PA | 1..248 | 1..279 | 626 | 48 | Plus |
dj-PB | 218 | CG1980-PB | 12..218 | 46..279 | 575 | 51.1 | Plus |
dj-PC | 187 | CG1980-PC | 1..187 | 69..279 | 563 | 52.8 | Plus |
CG6209-PA | 607 | CG6209-PA | 183..506 | 7..281 | 290 | 29.3 | Plus |
IP11147.pep Sequence
Translation from 45 to 905
> IP11147.pep
MLKRPALVYRCLQTSVKRSYHLNAHEHLRKKEILKPESQPSQKHKKFGDG
SIGVIHVIKNEYYGLPNPMHRKFREDLEKHQDRRKESNLSLKEEKREDLE
KMLKECQKLVKEITMQANDGDVTKICKELAQKEKMDKEKIKKKCRELAAR
EKCEKDKLKKKCKKLLKKDKCKKKDTCEEEKPCEEEDPCEKKSCCPKDPC
AKKPKKVDPCKKKDPCKKEDPCKKKAVNWKKKCKEVAEREQCKKLAEKKK
FKKMIKICKNLAAKEKCKKMAEKEMCRKKAKKGKKK*
IP11147.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:50:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG13741-PA | 283 | GG13741-PA | 1..268 | 1..272 | 674 | 77.2 | Plus |
Dere\GG13730-PA | 276 | GG13730-PA | 1..181 | 1..187 | 201 | 46.3 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
djl-PA | 286 | CG1984-PA | 1..286 | 1..286 | 1546 | 100 | Plus |
dj-PA | 248 | CG1980-PA | 1..248 | 1..279 | 626 | 48 | Plus |
dj-PB | 218 | CG1980-PB | 12..218 | 46..279 | 575 | 51.1 | Plus |
dj-PC | 187 | CG1980-PC | 1..187 | 69..279 | 563 | 52.8 | Plus |
CG6209-PA | 607 | CG6209-PA | 183..506 | 7..281 | 290 | 29.3 | Plus |
CG1988-PD | 530 | CG1988-PD | 73..335 | 65..284 | 225 | 31.3 | Plus |
CG1988-PC | 556 | CG1988-PC | 73..320 | 65..286 | 212 | 29.4 | Plus |
CG1988-PB | 578 | CG1988-PB | 95..342 | 65..286 | 212 | 29.4 | Plus |
CG7069-PA | 744 | CG7069-PA | 461..658 | 110..286 | 205 | 27.8 | Plus |
CG4836-PA | 836 | CG4836-PA | 484..652 | 122..283 | 205 | 40.8 | Plus |
CG4836-PD | 843 | CG4836-PD | 491..659 | 122..283 | 205 | 40.8 | Plus |
CG4836-PB | 1214 | CG4836-PB | 484..652 | 122..283 | 205 | 40.8 | Plus |
CG4836-PC | 1217 | CG4836-PC | 484..652 | 122..283 | 205 | 40.8 | Plus |
CG4836-PE | 1224 | CG4836-PE | 491..659 | 122..283 | 205 | 40.8 | Plus |
CG6209-PA | 607 | CG6209-PA | 390..607 | 74..281 | 204 | 30.7 | Plus |
CG1988-PD | 530 | CG1988-PD | 161..372 | 71..285 | 203 | 28.6 | Plus |
CG13337-PB | 680 | CG13337-PB | 337..608 | 6..284 | 200 | 23.7 | Plus |
CG13337-PA | 680 | CG13337-PA | 337..608 | 6..284 | 200 | 23.7 | Plus |
CG18368-PA | 1154 | CG18368-PA | 716..958 | 75..286 | 194 | 26.5 | Plus |
rudhira-PE | 2075 | CG43154-PE | 1409..1644 | 75..286 | 194 | 30 | Plus |
rudhira-PC | 2075 | CG43154-PC | 1409..1644 | 75..286 | 194 | 30 | Plus |
rudhira-PE | 2075 | CG43154-PE | 1341..1603 | 35..286 | 191 | 29.5 | Plus |
rudhira-PC | 2075 | CG43154-PC | 1341..1603 | 35..286 | 191 | 29.5 | Plus |
CG13337-PB | 680 | CG13337-PB | 459..656 | 76..284 | 189 | 30.6 | Plus |
CG13337-PA | 680 | CG13337-PA | 459..656 | 76..284 | 189 | 30.6 | Plus |
CG6209-PA | 607 | CG6209-PA | 372..595 | 74..286 | 188 | 28.4 | Plus |
CG13337-PB | 680 | CG13337-PB | 129..370 | 85..286 | 188 | 28 | Plus |
CG13337-PA | 680 | CG13337-PA | 129..370 | 85..286 | 188 | 28 | Plus |
CG1988-PD | 530 | CG1988-PD | 257..520 | 79..285 | 185 | 26.2 | Plus |
CG1988-PC | 556 | CG1988-PC | 275..546 | 71..285 | 184 | 25.8 | Plus |
CG1988-PB | 578 | CG1988-PB | 297..568 | 71..285 | 184 | 25.8 | Plus |
CG6209-PA | 607 | CG6209-PA | 135..392 | 2..284 | 182 | 27.4 | Plus |
CG4836-PA | 836 | CG4836-PA | 486..660 | 82..234 | 181 | 38.3 | Plus |
CG4836-PD | 843 | CG4836-PD | 493..667 | 82..234 | 181 | 38.3 | Plus |
CG4836-PB | 1214 | CG4836-PB | 486..660 | 82..234 | 181 | 38.3 | Plus |
CG4836-PC | 1217 | CG4836-PC | 486..660 | 82..234 | 181 | 38.3 | Plus |
CG4836-PE | 1224 | CG4836-PE | 493..667 | 82..234 | 181 | 38.3 | Plus |
CG13337-PB | 680 | CG13337-PB | 532..680 | 94..252 | 181 | 30.6 | Plus |
CG13337-PA | 680 | CG13337-PA | 532..680 | 94..252 | 181 | 30.6 | Plus |
CG1988-PC | 556 | CG1988-PC | 204..398 | 71..285 | 179 | 28.9 | Plus |
CG1988-PB | 578 | CG1988-PB | 226..420 | 71..285 | 179 | 28.9 | Plus |
CG18368-PA | 1154 | CG18368-PA | 680..868 | 93..276 | 175 | 30.3 | Plus |
CG7069-PA | 744 | CG7069-PA | 509..744 | 71..285 | 174 | 30.3 | Plus |
CG2839-PA | 826 | CG2839-PA | 567..792 | 71..286 | 169 | 26.8 | Plus |
CG13337-PB | 680 | CG13337-PB | 366..580 | 81..286 | 166 | 30 | Plus |
CG13337-PA | 680 | CG13337-PA | 366..580 | 81..286 | 166 | 30 | Plus |
CG4836-PA | 836 | CG4836-PA | 474..642 | 137..284 | 155 | 35.4 | Plus |
CG4836-PD | 843 | CG4836-PD | 481..649 | 137..284 | 155 | 35.4 | Plus |
CG4836-PB | 1214 | CG4836-PB | 474..642 | 137..284 | 155 | 35.4 | Plus |
CG4836-PC | 1217 | CG4836-PC | 474..642 | 137..284 | 155 | 35.4 | Plus |
CG4836-PE | 1224 | CG4836-PE | 481..649 | 137..284 | 155 | 35.4 | Plus |
rudhira-PE | 2075 | CG43154-PE | 1470..1672 | 72..272 | 152 | 27.5 | Plus |
rudhira-PC | 2075 | CG43154-PC | 1470..1672 | 72..272 | 152 | 27.5 | Plus |
CG2839-PA | 826 | CG2839-PA | 342..550 | 71..286 | 152 | 23.6 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:50:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM10924-PA | 286 | GM10924-PA | 1..277 | 1..277 | 786 | 91.7 | Plus |
Dsec\GM10923-PA | 248 | GM10923-PA | 1..182 | 1..213 | 183 | 41.1 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:50:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\dj-PA | 259 | GD19904-PA | 1..162 | 1..172 | 224 | 41.6 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:50:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE24893-PA | 281 | GE24893-PA | 1..271 | 1..277 | 610 | 70.4 | Plus |
Dyak\GE24892-PA | 281 | GE24892-PA | 1..271 | 1..277 | 577 | 70 | Plus |
Dyak\GE24890-PA | 255 | GE24890-PA | 1..163 | 1..172 | 203 | 41 | Plus |
Dyak\GE24891-PA | 255 | GE24891-PA | 1..163 | 1..172 | 195 | 41.6 | Plus |