Clone IP11237 Report

Search the DGRC for IP11237

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:112
Well:37
Vector:pOT2
Associated Gene/TranscriptCG5321-RB
Protein status:IP11237.pep: gold
Preliminary Size:1251
Sequenced Size:1334

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5321 2005-01-01 Successful iPCR screen
CG5321 2008-04-29 Release 5.5 accounting
CG5321 2008-08-15 Release 5.9 accounting
CG5321 2008-12-18 5.12 accounting

Clone Sequence Records

IP11237.complete Sequence

1334 bp (1334 high quality bases) assembled on 2005-05-04

GenBank Submission: BT022931

> IP11237.complete
TCGGCACACACCGAGTCGATCGCCATGTGGGTTCCGAGATTACTGGGTCG
TTCCCTGAGTCAACTGAAGACCATTAACTCCGCTCAGTTTTCTCGCCAAA
TCAGTGCCAAGATCGTGAATGAATCGAGTATCGAGGTTCAACCGGAGGCA
AATTCCAAACCGCTTACTTTTCCGGGTATTTGGCTGCGGGACAATTGCAT
GTGCGAGGATTGCTTCCACGGCAGCTCCAAGTCGCGTAAGCTGGACTGGG
ATAACTTCGATACCCGCATCCGGCCAGTCAGCCTGCAGACAGATGAGCAA
TCCAAGGAAGTGCTGGTCAAGTGGAGCGATGCACACGAGAGCAGGTTCTC
TTTGAAGTGGCTAAAGGAGCGATGTTTCGAGCCTGATAAACAGCAGGAAT
ACCTGCGGGACTTCTACAGACCCACGACTAGACACTGGTCGGGTGCAGAG
TTTCAGGATATTGCCCAGCACTTTAGCTACGATGAGGTGATGTCCCAGGA
TTCGGTGCTGATGCAGTGGCTCCAGGCGCTGGCCATCTACGGTGTGGCTC
TGCTCCGAGGAGCTCCACTGGACGAGGGCGTGGTGCGACGACTGGCGGAC
CGGGTGGGCTTCATCCGGCGCACCACCTACGGCGAGGAGTTTGTGGTGCA
GGCCAAGCCGGGTGCCCAGAACTTCGCCTACCTTTCGCTGACACTGCCCC
TCCACACGGATCTGCCCTACTACGAGTACAAGCCAAGCGTCAACATCCTG
CACTGCGTTGTCCAAACGGATTCACCTGGTGGCAGCAATATGCTCGTGGA
TGGCTTCCATGTCGCCGATCTCCTGCGTCGCGATCATCCCGAAGACTTCG
AGCGACTGAGTCGCATAGTAGTCGATTGGAACGACATTGGCAGCGAGGAT
GGACGAGAGTTCCACAACATTTGGAGGGCACCAGTCATTTGCTTGGACGA
GGAGGGGCGATACACGCGGATAAATCACAGCGTGCCGCAGCGGGACAGTC
ACTTCAATGTGCCGCTCGAGGAGGTCCTTCCGTGGTATGAGTCCTACGCC
CTTTTCGTTCGCCTGGCCATCGCCGATAGCCACGCCTTCAAAACGCGTCC
CGGCGACGTCCTGACCTTCAACAATATTCGCCTGCTCCACGGACGTACTG
GTTATGATGATTCGGAGGAGAGTCCGCGCTATATTGTGGGCGCCTATCTG
GACTGGGACATCATATATTCGCGCCTAAGGGTATTGAAAAAACGCTTGAC
TGCGAGTTGCCAATAAAAAGCGAGATAACATAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

IP11237.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5321-RB 1526 CG5321-RB 61..1342 1..1282 6410 100 Plus
CG5321.a 1717 CG5321.a 61..1342 1..1282 6410 100 Plus
CG10814-RA 1525 CG10814-RA 954..1087 908..1041 220 77.6 Plus
CG10814-RA 1525 CG10814-RA 1145..1194 1099..1148 145 86 Plus
CG10814-RA 1525 CG10814-RA 645..687 599..641 140 88.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 14569918..14570858 1..941 4690 99.9 Plus
chrX 22417052 chrX 14570929..14571269 941..1281 1705 100 Plus
chr2R 21145070 chr2R 9263551..9263842 1232..941 200 71.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:05:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:12:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14679580..14680520 1..941 4705 100 Plus
X 23542271 X 14680591..14680932 941..1282 1710 100 Plus
2R 25286936 2R 13376206..13376497 1232..941 200 71.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:16:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 14687678..14688618 1..941 4705 100 Plus
X 23527363 X 14688689..14689030 941..1282 1710 100 Plus
2R 25260384 2R 13377489..13377538 1148..1099 145 86 Minus
2R 25260384 2R 13378295..13378337 641..599 140 88.3 Minus
Blast to na_te.dros performed on 2019-03-15 17:12:04 has no hits.

IP11237.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:13:21 Download gff for IP11237.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 14569918..14570858 1..941 99 -> Plus
chrX 14570930..14571269 942..1281 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:48:40 Download gff for IP11237.complete
Subject Subject Range Query Range Percent Splice Strand
CG5321-RB 1..1242 25..1266 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:42:35 Download gff for IP11237.complete
Subject Subject Range Query Range Percent Splice Strand
CG5321-RB 1..1242 25..1266 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:28:19 Download gff for IP11237.complete
Subject Subject Range Query Range Percent Splice Strand
CG5321-RB 1..1242 25..1266 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:22:09 Download gff for IP11237.complete
Subject Subject Range Query Range Percent Splice Strand
CG5321-RB 1..1242 25..1266 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:27:54 Download gff for IP11237.complete
Subject Subject Range Query Range Percent Splice Strand
CG5321-RB 1..1242 25..1266 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:15:29 Download gff for IP11237.complete
Subject Subject Range Query Range Percent Splice Strand
CG5321-RB 1..1281 1..1281 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:42:34 Download gff for IP11237.complete
Subject Subject Range Query Range Percent Splice Strand
CG5321-RB 1..1281 1..1281 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:28:19 Download gff for IP11237.complete
Subject Subject Range Query Range Percent Splice Strand
CG5321-RB 13..1293 1..1281 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:22:10 Download gff for IP11237.complete
Subject Subject Range Query Range Percent Splice Strand
CG5321-RB 1..1281 1..1281 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:27:54 Download gff for IP11237.complete
Subject Subject Range Query Range Percent Splice Strand
CG5321-RB 13..1293 1..1281 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:13:21 Download gff for IP11237.complete
Subject Subject Range Query Range Percent Splice Strand
X 14679580..14680520 1..941 100 -> Plus
X 14680592..14680931 942..1281 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:13:21 Download gff for IP11237.complete
Subject Subject Range Query Range Percent Splice Strand
X 14679580..14680520 1..941 100 -> Plus
X 14680592..14680931 942..1281 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:13:21 Download gff for IP11237.complete
Subject Subject Range Query Range Percent Splice Strand
X 14679580..14680520 1..941 100 -> Plus
X 14680592..14680931 942..1281 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:28:19 Download gff for IP11237.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14573613..14574553 1..941 100 -> Plus
arm_X 14574625..14574964 942..1281 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:04:20 Download gff for IP11237.complete
Subject Subject Range Query Range Percent Splice Strand
X 14687678..14688618 1..941 100 -> Plus
X 14688690..14689029 942..1281 100   Plus

IP11237.hyp Sequence

Translation from 0 to 1265

> IP11237.hyp
SAHTESIAMWVPRLLGRSLSQLKTINSAQFSRQISAKIVNESSIEVQPEA
NSKPLTFPGIWLRDNCMCEDCFHGSSKSRKLDWDNFDTRIRPVSLQTDEQ
SKEVLVKWSDAHESRFSLKWLKERCFEPDKQQEYLRDFYRPTTRHWSGAE
FQDIAQHFSYDEVMSQDSVLMQWLQALAIYGVALLRGAPLDEGVVRRLAD
RVGFIRRTTYGEEFVVQAKPGAQNFAYLSLTLPLHTDLPYYEYKPSVNIL
HCVVQTDSPGGSNMLVDGFHVADLLRRDHPEDFERLSRIVVDWNDIGSED
GREFHNIWRAPVICLDEEGRYTRINHSVPQRDSHFNVPLEEVLPWYESYA
LFVRLAIADSHAFKTRPGDVLTFNNIRLLHGRTGYDDSEESPRYIVGAYL
DWDIIYSRLRVLKKRLTASCQ*

IP11237.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5321-PC 413 CG5321-PC 1..413 9..421 2208 100 Plus
CG5321-PB 413 CG5321-PB 1..413 9..421 2208 100 Plus
CG10814-PA 402 CG10814-PA 23..397 40..413 1142 54.7 Plus
CG14630-PA 406 CG14630-PA 30..400 44..413 1041 48.7 Plus
CG4335-PA 364 CG4335-PA 10..360 52..412 320 26.7 Plus

IP11237.pep Sequence

Translation from 0 to 1265

> IP11237.pep
SAHTESIAMWVPRLLGRSLSQLKTINSAQFSRQISAKIVNESSIEVQPEA
NSKPLTFPGIWLRDNCMCEDCFHGSSKSRKLDWDNFDTRIRPVSLQTDEQ
SKEVLVKWSDAHESRFSLKWLKERCFEPDKQQEYLRDFYRPTTRHWSGAE
FQDIAQHFSYDEVMSQDSVLMQWLQALAIYGVALLRGAPLDEGVVRRLAD
RVGFIRRTTYGEEFVVQAKPGAQNFAYLSLTLPLHTDLPYYEYKPSVNIL
HCVVQTDSPGGSNMLVDGFHVADLLRRDHPEDFERLSRIVVDWNDIGSED
GREFHNIWRAPVICLDEEGRYTRINHSVPQRDSHFNVPLEEVLPWYESYA
LFVRLAIADSHAFKTRPGDVLTFNNIRLLHGRTGYDDSEESPRYIVGAYL
DWDIIYSRLRVLKKRLTASCQ*

IP11237.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19297-PA 405 GF19297-PA 1..402 9..415 1724 76.2 Plus
Dana\GF11192-PA 409 GF11192-PA 14..399 42..414 1136 53.9 Plus
Dana\GF22125-PA 407 GF22125-PA 21..401 36..413 1016 48.6 Plus
Dana\GF23210-PA 732 GF23210-PA 6..370 47..421 320 27.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17850-PA 469 GG17850-PA 1..405 9..413 2010 90.9 Plus
Dere\GG22499-PA 409 GG22499-PA 10..398 27..414 1153 54.8 Plus
Dere\GG12825-PA 405 GG12825-PA 29..399 44..413 1046 48.9 Plus
Dere\GG15479-PA 364 GG15479-PA 9..360 51..412 322 27.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12513-PA 426 GH12513-PA 1..410 9..419 1571 69.2 Plus
Dgri\GH20273-PA 391 GH20273-PA 4..387 29..416 1122 52.2 Plus
Dgri\GH11991-PA 408 GH11991-PA 1..402 14..413 1114 48.9 Plus
Dgri\GH14171-PA 368 GH14171-PA 18..364 60..412 335 27.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5321-PC 413 CG5321-PC 1..413 9..421 2208 100 Plus
CG5321-PB 413 CG5321-PB 1..413 9..421 2208 100 Plus
CG10814-PA 402 CG10814-PA 23..397 40..413 1142 54.7 Plus
CG14630-PA 406 CG14630-PA 30..400 44..413 1041 48.7 Plus
CG4335-PA 364 CG4335-PA 10..360 52..412 320 26.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:33:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14867-PA 429 GI14867-PA 21..407 32..416 1567 72.1 Plus
Dmoj\GI19441-PA 421 GI19441-PA 50..416 51..416 1157 57.8 Plus
Dmoj\GI15613-PA 409 GI15613-PA 15..403 29..413 1105 49.9 Plus
Dmoj\GI10544-PA 367 GI10544-PA 2..363 44..412 307 26.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20147-PA 431 GL20147-PA 1..383 9..402 1520 71 Plus
Dper\GL11099-PA 413 GL11099-PA 48..413 55..419 1171 57.4 Plus
Dper\GL14222-PA 380 GL14222-PA 14..374 55..413 1016 49.6 Plus
Dper\GL24093-PA 365 GL24093-PA 18..361 60..412 329 28.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18803-PA 404 GA18803-PA 1..400 9..415 1701 75.8 Plus
Dpse\GA10576-PA 413 GA10576-PA 48..408 55..414 1174 58.2 Plus
Dpse\GA22704-PA 405 GA22704-PA 15..399 32..413 1071 49.5 Plus
Dpse\GA18117-PA 365 GA18117-PA 18..361 60..412 327 28.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12042-PA 416 GM12042-PA 1..405 9..413 2109 96.8 Plus
Dsec\GM20285-PA 409 GM20285-PA 11..403 28..419 1144 53.7 Plus
Dsec\GM19110-PA 405 GM19110-PA 29..399 44..413 1024 47.6 Plus
Dsec\GM23194-PA 364 GM23194-PA 18..360 60..412 304 26.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17176-PA 416 GD17176-PA 1..405 9..413 2126 97.3 Plus
Dsim\GD25765-PA 409 GD25765-PA 10..403 27..419 1145 53.6 Plus
Dsim\GD16541-PA 255 GD16541-PA 5..249 171..413 768 54.7 Plus
Dsim\GD20068-PA 364 GD20068-PA 10..360 52..412 314 27.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19528-PA 420 GJ19528-PA 2..414 14..419 1548 67.8 Plus
Dvir\GJ21194-PA 392 GJ21194-PA 26..388 55..416 1144 55.6 Plus
Dvir\GJ15218-PA 404 GJ15218-PA 2..398 11..413 1093 46.9 Plus
Dvir\GJ24198-PA 367 GJ24198-PA 2..363 44..412 304 27.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14708-PA 411 GK14708-PA 1..404 9..415 1637 72.5 Plus
Dwil\GK17984-PA 405 GK17984-PA 37..403 54..418 1155 55.9 Plus
Dwil\GK16355-PA 408 GK16355-PA 21..402 36..413 1056 48.7 Plus
Dwil\GK22732-PA 367 GK22732-PA 18..363 60..412 338 26.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17150-PA 413 GE17150-PA 1..413 9..421 2117 94.4 Plus
Dyak\GE13368-PA 409 GE13368-PA 10..403 27..419 1122 52.5 Plus
Dyak\GE16657-PA 405 GE16657-PA 29..399 44..413 1050 49.2 Plus
Dyak\GE25077-PA 364 GE25077-PA 18..360 60..412 308 26.5 Plus