Clone IP11376 Report

Search the DGRC for IP11376

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:113
Well:76
Vector:pOT2
Associated Gene/TranscriptSpn42Db-RD
Protein status:IP11376.pep: gold
Preliminary Size:1056
Sequenced Size:1491

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9454 2005-01-01 Successful iPCR screen
CG9454 2008-04-29 Release 5.5 accounting

Clone Sequence Records

IP11376.complete Sequence

1491 bp (1491 high quality bases) assembled on 2005-05-04

GenBank Submission: BT022284

> IP11376.complete
CATATTTAACATATTTAACCTGAGATCGTCTGCTTTCTTCATCATGAAAG
ATGAGGAGTTCGCACAGGGCTTGGAACAATTCGCTCTTTGTCTGCACGAC
CATTTGTGCCGGGCAAGTGCTGGCCTAAACATCATCTACTCCCCATTATC
CATCCACATCTCTGCGGCCATGCTGCGGATGGGAACATCCGAGGGATCGG
CTACAGCTAAGGAGATGGACGAGGGGCTCCGTTTCGGTGGGCTAGAAGCT
CAGCAAGTAGCTGAAAGCTTTGGTGTCGTCCTCAAGTCCTATGAACAGTG
CCAGGTTCTTAAAATGGCAAACGGCCTATATGTTATGAAGGGTCTCCAAG
TTGACGAGCAGTTTGGTCACATACTAGAGCAGAAGTTTCGCTCCAAGCCA
ATGGAGATTGACTTTGGCAGCGAGCAGGCTGCCAGCATAATCAACAAATG
GGTGGAGTCACAGACCAACAACCTGATCAAGGACATAATCGGTCCAAGAG
TTCTTACCAAGGACTCGCGGCTGTGCCTAGTAAACGGTATTCACTTCAAG
GGTGAGTGGTCAATCAGTTTCAATGAAAAAGAAACCCGCGAAGAGGATTT
CTTCGGATCGGATAGACCTACCAGAGTGAGAATGATGCATGTGTGCGAGA
ACTTCTTTTTTGCCGTACTTCCCATGTTCGAAGCCACTGCCCTTAGAATG
AATTATAGTGCCTGTAATTTGGCCATGATCATTTTACTTCCTGATGAGAA
GTCGAATCTCACGAGCCTCGAAAAGAAACTTAGTGATATTTCCCTAGAGG
TAGTGTCATCAGCAATGAATCTGGAAAAAGTGGATGTGAAGATTCCTAGC
TTTACAGCCGAGTTCCAGCAAGAACTATCCCAGGTTTTAATGCTGGTTAG
CTGAAATGGATTTGTTATTGAAATTTGATTATACGCAACCTGGCTACTCA
CAGATGGGCATGAACCGAATATTCAGTGGTCAGGCAGAGCTTGGGGGAAT
GCTACAATCCGAGGAAAGCCTTTTTGTCTCCCAGATCGTCCACAAAGCAT
TTATCGAGATTAACGAAGTGGGCACTGAAGCTGCAGCCGCAACGGGTGAG
CCTGCAAAAAAAAAAGGTTCCAAAACTTTTGGCAATTTGAAAGCCTCTTA
TATCTAGTACTCCGGATATTCTTACGAATGTCATACGAGGTGCTAAGCAA
GTCCAATATTAAAAATTTCACTCAAATATGTATATATTCGCATTAACTAA
TTTAAACTTCTTGTTCAGCTGCGGTTGCCACATTTAGAAGCATGCCTGCG
CGCCAAGGACCTCCAAAGGTATTCCACGCTAATAGACCTTTCTTCTATGC
TATAAAGGACAACACCCATGGCCTTCTATTTGCCGGTCATTTTATCACAA
CCAAGGTTGAGCAGTCTGAAAAATGTAACACATGTACCTAAAGGAAAAAT
AAATATGTATATCTTTGGCGTGGGAAAAAAAAAAAAAAAAA

IP11376.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG9454.d 1474 CG9454.d 1..1474 1..1474 7370 100 Plus
CG9454.b 1395 CG9454.b 1..1193 1..1193 5950 99.9 Plus
CG9454.a 1418 CG9454.a 3..897 1..895 4475 100 Plus
CG9454.a 1418 CG9454.a 897..1418 953..1474 2610 100 Plus
CG9454.b 1395 CG9454.b 1188..1395 1267..1474 1040 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 2766615..2768088 1474..1 7355 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:08:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6879282..6880758 1477..1 7385 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:15:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 6880481..6881957 1477..1 7385 100 Minus
Blast to na_te.dros performed on 2019-03-16 15:33:40 has no hits.

IP11376.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:34:24 Download gff for IP11376.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 2766615..2768088 1..1474 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:49:23 Download gff for IP11376.complete
Subject Subject Range Query Range Percent Splice Strand
CG9454-RC 1..863 44..905 99 == Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:41:46 Download gff for IP11376.complete
Subject Subject Range Query Range Percent Splice Strand
Spn42Db-RC 1..863 44..905 99 == Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:48:45 Download gff for IP11376.complete
Subject Subject Range Query Range Percent Splice Strand
Spn42Db-RD 1..861 44..904 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:17:29 Download gff for IP11376.complete
Subject Subject Range Query Range Percent Splice Strand
CG9454-RA 1..863 44..905 99 == Plus
CG9454-RA 864..1056 965..1157 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:49:23 Download gff for IP11376.complete
Subject Subject Range Query Range Percent Splice Strand
Spn42Db-RD 1..861 44..904 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:14:40 Download gff for IP11376.complete
Subject Subject Range Query Range Percent Splice Strand
CG9454-RC 1..863 44..905 99 == Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:41:46 Download gff for IP11376.complete
Subject Subject Range Query Range Percent Splice Strand
Spn42Db-RC 1..863 44..905 99 == Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:48:45 Download gff for IP11376.complete
Subject Subject Range Query Range Percent Splice Strand
Spn42Db-RD 13..1486 1..1474 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:17:29 Download gff for IP11376.complete
Subject Subject Range Query Range Percent Splice Strand
CG9454-RA 1..863 44..905 99 == Plus
CG9454-RA 864..1056 965..1157 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:49:23 Download gff for IP11376.complete
Subject Subject Range Query Range Percent Splice Strand
Spn42Db-RD 13..1486 1..1474 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:34:24 Download gff for IP11376.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6879285..6880758 1..1474 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:34:24 Download gff for IP11376.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6879285..6880758 1..1474 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:34:24 Download gff for IP11376.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6879285..6880758 1..1474 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:48:45 Download gff for IP11376.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2766790..2768263 1..1474 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:03:49 Download gff for IP11376.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6880484..6881957 1..1474 100   Minus

IP11376.hyp Sequence

Translation from 0 to 903

> IP11376.hyp
IFNIFNLRSSAFFIMKDEEFAQGLEQFALCLHDHLCRASAGLNIIYSPLS
IHISAAMLRMGTSEGSATAKEMDEGLRFGGLEAQQVAESFGVVLKSYEQC
QVLKMANGLYVMKGLQVDEQFGHILEQKFRSKPMEIDFGSEQAASIINKW
VESQTNNLIKDIIGPRVLTKDSRLCLVNGIHFKGEWSISFNEKETREEDF
FGSDRPTRVRMMHVCENFFFAVLPMFEATALRMNYSACNLAMIILLPDEK
SNLTSLEKKLSDISLEVVSSAMNLEKVDVKIPSFTAEFQQELSQVLMLVS
*

IP11376.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
Spn42Db-PD 286 CG9454-PD 1..286 15..300 1451 100 Plus
Spn42Db-PC 388 CG9454-PC 1..285 15..299 1444 99.6 Plus
Spn42Da-PJ 374 CG9453-PJ 7..284 18..295 530 40.7 Plus
Spn42Da-PL 379 CG9453-PL 7..284 18..295 530 40.7 Plus
Spn42Da-PK 379 CG9453-PK 7..284 18..295 530 40.7 Plus

IP11376.pep Sequence

Translation from 1 to 903

> IP11376.pep
IFNIFNLRSSAFFIMKDEEFAQGLEQFALCLHDHLCRASAGLNIIYSPLS
IHISAAMLRMGTSEGSATAKEMDEGLRFGGLEAQQVAESFGVVLKSYEQC
QVLKMANGLYVMKGLQVDEQFGHILEQKFRSKPMEIDFGSEQAASIINKW
VESQTNNLIKDIIGPRVLTKDSRLCLVNGIHFKGEWSISFNEKETREEDF
FGSDRPTRVRMMHVCENFFFAVLPMFEATALRMNYSACNLAMIILLPDEK
SNLTSLEKKLSDISLEVVSSAMNLEKVDVKIPSFTAEFQQELSQVLMLVS
*

IP11376.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:30:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11762-PA 406 GF11762-PA 4..289 15..299 767 52.1 Plus
Dana\GF11763-PA 376 GF11763-PA 7..285 18..296 571 42 Plus
Dana\GF11691-PA 374 GF11691-PA 7..284 19..296 399 32.9 Plus
Dana\GF12698-PA 390 GF12698-PA 30..299 27..296 350 31 Plus
Dana\GF13145-PA 438 GF13145-PA 32..289 43..296 338 29.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10789-PA 381 GG10789-PA 1..283 15..297 1282 82.3 Plus
Dere\GG10790-PA 424 GG10790-PA 23..316 5..295 548 39.2 Plus
Dere\GG21843-PA 374 GG21843-PA 7..284 19..296 383 31.4 Plus
Dere\GG23231-PA 404 GG23231-PA 31..312 23..296 372 34.5 Plus
Dere\GG23229-PA 401 GG23229-PA 3..290 19..296 370 33.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18180-PA 386 GH18180-PA 2..280 19..295 660 46.2 Plus
Dgri\GH19862-PA 382 GH19862-PA 11..285 19..293 569 41.2 Plus
Dgri\GH20251-PA 377 GH20251-PA 7..284 19..296 389 32.1 Plus
Dgri\GH21519-PA 384 GH21519-PA 24..293 27..296 319 28.1 Plus
Dgri\GH22013-PA 401 GH22013-PA 11..289 27..296 304 27.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
Spn42Db-PD 286 CG9454-PD 1..286 15..300 1451 100 Plus
Spn42Db-PC 388 CG9454-PC 1..285 15..299 1444 99.6 Plus
Spn42Da-PJ 374 CG9453-PJ 7..284 18..295 530 40.7 Plus
Spn42Da-PL 379 CG9453-PL 7..284 18..295 530 40.7 Plus
Spn42Da-PK 379 CG9453-PK 7..284 18..295 530 40.7 Plus
Spn42Da-PH 379 CG9453-PH 7..284 18..295 530 40.7 Plus
Spn42Da-PG 379 CG9453-PG 7..284 18..295 530 40.7 Plus
Spn42Da-PA 392 CG9453-PA 7..284 18..295 530 40.7 Plus
Spn42Da-PI 406 CG9453-PI 39..316 18..295 530 40.7 Plus
Spn42Da-PF 411 CG9453-PF 39..316 18..295 530 40.7 Plus
Spn42Da-PE 411 CG9453-PE 39..316 18..295 530 40.7 Plus
Spn42Da-PD 411 CG9453-PD 39..316 18..295 530 40.7 Plus
Spn42Da-PB 424 CG9453-PB 39..316 18..295 530 40.7 Plus
Spn55B-PA 374 CG10913-PA 7..284 19..296 382 31.1 Plus
Spn42Dc-PB 403 CG9455-PB 6..290 22..296 350 31.9 Plus
Spn42Dc-PA 403 CG9455-PA 6..290 22..296 350 31.9 Plus
Spn42De-PB 386 CG9460-PB 13..294 23..296 344 32.4 Plus
Spn42De-PA 404 CG9460-PA 31..312 23..296 344 32.4 Plus
Spn43Aa-PA 390 CG12172-PA 30..299 27..296 335 31.8 Plus
Spn28F-PA 375 CG8137-PA 16..283 26..297 318 31.7 Plus
Spn42Dd-PB 372 CG9456-PB 21..284 31..296 314 31 Plus
Spn38F-PB 370 CG9334-PB 21..282 31..297 308 28.8 Plus
Spn38F-PA 372 CG9334-PA 21..282 31..297 308 28.8 Plus
Spn43Ab-PB 393 CG1865-PB 48..295 43..288 293 28.4 Plus
nec-PA 476 CG1857-PA 107..383 24..296 272 27.9 Plus
Spn28B-PB 378 CG6717-PB 25..282 35..295 267 28.2 Plus
Spn28B-PA 378 CG6717-PA 25..282 35..295 267 28.2 Plus
Spn28Da-PB 384 CG31902-PB 14..282 24..296 260 29.9 Plus
Spn47C-PC 382 CG7722-PC 33..287 42..292 239 25.7 Plus
Spn47C-PB 382 CG7722-PB 33..287 42..292 239 25.7 Plus
Spn47C-PA 382 CG7722-PA 33..287 42..292 239 25.7 Plus
Spn88Eb-PA 426 CG6687-PA 27..332 13..299 228 24.5 Plus
Spn27A-PB 447 CG11331-PB 89..347 39..296 207 26.1 Plus
Spn27A-PA 447 CG11331-PA 89..347 39..296 207 26.1 Plus
Spn28Db-PB 377 CG33121-PB 38..281 43..296 204 25.4 Plus
Spn88Ea-PB 427 CG18525-PB 38..331 22..296 193 23.2 Plus
Spn88Ea-PA 427 CG18525-PA 38..331 22..296 193 23.2 Plus
Spn53F-PB 379 CG10956-PB 26..286 31..293 182 21.9 Plus
Spn77Ba-PC 450 CG6680-PC 73..361 21..297 177 25.8 Plus
Spn77Ba-PB 450 CG6680-PB 73..361 21..297 177 25.8 Plus
Spn77Ba-PA 450 CG6680-PA 73..361 21..297 177 25.8 Plus
Spn43Ad-PA 407 CG1859-PA 38..318 26..296 172 22.1 Plus
Spn31A-PA 382 CG4804-PA 18..288 31..296 164 24.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10134-PA 406 GI10134-PA 9..288 19..296 635 42.9 Plus
Dmoj\GI10133-PA 403 GI10133-PA 7..287 18..296 627 42 Plus
Dmoj\GI19810-PA 401 GI19810-PA 11..287 19..295 541 41.2 Plus
Dmoj\GI19420-PA 376 GI19420-PA 7..284 19..296 418 33.9 Plus
Dmoj\GI10132-PA 308 GI10132-PA 1..187 112..296 363 42.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10964-PA 379 GL10964-PA 1..280 15..293 777 51.4 Plus
Dper\GL10965-PA 393 GL10965-PA 5..284 16..295 544 40.4 Plus
Dper\GL10534-PA 376 GL10534-PA 7..284 19..296 413 32.9 Plus
Dper\GL13962-PA 395 GL13962-PA 24..301 23..296 382 33.8 Plus
Dper\GL11125-PA 404 GL11125-PA 10..290 26..296 366 30.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24549-PA 379 GA24549-PA 1..280 15..293 780 51.4 Plus
Dpse\GA21798-PA 393 GA21798-PA 5..284 16..295 552 41.1 Plus
Dpse\GA10637-PA 376 GA10637-PA 7..284 19..296 410 32.5 Plus
Dpse\GA26906-PA 395 GA26906-PA 27..301 26..296 374 33.5 Plus
Dpse\GA21800-PA 404 GA21800-PA 10..290 26..296 368 30.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20839-PA 388 GM20839-PA 1..283 15..297 1374 89.4 Plus
Dsec\GM11072-PA 397 GM11072-PA 143..318 1..176 857 89.2 Plus
Dsec\GM11072-PA 397 GM11072-PA 1..139 15..153 665 87.1 Plus
Dsec\GM11074-PA 321 GM11074-PA 28..316 10..295 585 41.9 Plus
Dsec\GM20841-PA 347 GM20841-PA 1..239 57..295 504 41.9 Plus
Dsec\GM21844-PA 374 GM21844-PA 7..284 19..296 393 31.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10291-PA 388 GD10291-PA 1..283 15..297 1369 89.4 Plus
Dsim\GD10292-PA 424 GD10292-PA 28..316 10..295 570 41.2 Plus
Dsim\GD11338-PA 374 GD11338-PA 7..284 19..296 394 31.8 Plus
Dsim\GD10430-PA 403 GD10430-PA 3..290 19..296 367 33 Plus
Dsim\GD10459-PA 390 GD10459-PA 30..299 27..296 346 31.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23351-PA 348 GJ23351-PA 1..242 57..296 618 48.8 Plus
Dvir\GJ18486-PA 377 GJ18486-PA 11..287 19..295 538 41 Plus
Dvir\GJ22484-PA 376 GJ22484-PA 7..284 19..296 387 31.8 Plus
Dvir\GJ17545-PA 407 GJ17545-PA 11..289 27..296 333 29.2 Plus
Dvir\GJ15151-PA 387 GJ15151-PA 27..296 27..296 318 28.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20756-PA 361 GK20756-PA 16..298 19..299 626 45.1 Plus
Dwil\GK20760-PA 433 GK20760-PA 45..322 19..296 600 43.2 Plus
Dwil\GK20758-PA 404 GK20758-PA 31..306 19..295 551 42 Plus
Dwil\GK20759-PA 401 GK20759-PA 31..306 19..295 540 41.6 Plus
Dwil\GK20757-PA 332 GK20757-PA 1..239 57..296 450 40.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24378-PA 351 GE24378-PA 1..285 15..299 1252 80.4 Plus
Dyak\GE24388-PA 392 GE24388-PA 7..284 18..295 573 41.8 Plus
Dyak\GE11922-PA 374 GE11922-PA 7..284 19..296 398 32.1 Plus
Dyak\GE19082-PA 386 GE19082-PA 13..294 23..296 368 34.2 Plus
Dyak\GE19110-PA 390 GE19110-PA 30..299 27..296 346 31.8 Plus