Clone IP11527 Report

Search the DGRC for IP11527

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:115
Well:27
Vector:pOT2
Associated Gene/TranscriptCG4335-RA
Protein status:IP11527.pep: gold
Preliminary Size:1095
Sequenced Size:1214

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4335 2005-01-01 Successful iPCR screen
CG4335 2008-04-29 Release 5.5 accounting
CG4335 2008-08-15 Release 5.9 accounting
CG4335 2008-12-18 5.12 accounting

Clone Sequence Records

IP11527.complete Sequence

1214 bp (1214 high quality bases) assembled on 2005-04-11

GenBank Submission: BT022384

> IP11527.complete
CATTAACATGTTGCTTTTGAAGCACCCGAAAACCAGCCAATCAATAGAAA
TCAATGAGTTTTGGCTCCGTGATCATTGTCGATGTGTGGAGTGTCTAAAT
TTCGAAACAAATCAGAGGCGATACGATGTCTTAGATCTACCAGCTGATAT
AATGCCACTAGATGTCAAATACGACGGGATGAATCTACAAGTGCAGTGGA
GTGATGCTCACAAGTCGAACTATGACCTGGACTTTATCTTCGACTCACAG
CTGGAGAGGTTGATAGGTCGGCGATCAAAGTCCACTAATCTGACACCATG
GAATCGTAGCATTATCTTGCAAAACGAACGGCACTTACGATTCCCATTGC
CCCAGCTGGTTTCCAGTGATAACGAAGTCAGATCCCTGGTTGAATCTCTG
GTGCGTTATGGCATTGTCTTTATCGATGATGTGGCTCCCACCGCGAATAT
GACAGAATTGGCTCTGCGACGAGTTTTCCCCCTTATGAAAACGTTCTTTG
GCGAAATGTGGACTTTTAGCGATAACCCCGATCACGCGGACACCGCTTAT
ACCAAACTTTACCTGGGTTCCCATACGGATAATACCTATTTCTGCGATGC
AGCCGGACTACAGGCTCTACATTGCATTGAGCACTCGGGATCGGGTGGCG
AAAATTTCTTTGTTGATGGTCTGCATGTGGTTCACGAACTGAAACGCCGG
TATCCCGCCGCTTATGATGTACTGTGCAGTGTCCAAGTTCCTGGAGAGTA
CATCGAAAAAGGGGAGCACCACTACCACACTGCCCCCATTATACAGGTGG
ATCCACTGACTCAGGAATTTGTTCAACTCAGACTAAATGTATATGATCGC
GCCGTGTTTAATACCATCCCTCAAGCCGAAATGGCCGAGTTCTATGACAG
TCTTCGCCAGCTTTTGCTAATCGTCAGGGATAAGCAACAGCAGTGGGCTC
TCAAGCTATGTCCCGGCAGCATTGTTCTTTTCGATAACTGGAGAGTGCTC
CATGGTCGAGAGGCATACACAGGAAGTCGTACCATGTCCGGTTCCTATGT
GCAGCGCACAGATTTTCTCAGCAAGGCTCGAGTGCTGGGAATTATTGACT
GAAAGCTTATTGAAAAATACCTAATGTATACCGAATTAAAACCTTTTATG
AACTAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA

IP11527.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4335.a 1633 CG4335.a 43..1202 1..1160 5800 100 Plus
CG4335-RA 1360 CG4335-RA 64..1223 1..1160 5800 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 16230574..16231532 1157..198 4600 98.9 Minus
chr3R 27901430 chr3R 16231597..16231788 192..1 930 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:09:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20406612..20407574 1160..198 4815 100 Minus
3R 32079331 3R 20407633..20407830 198..1 990 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 20147443..20148405 1160..198 4815 100 Minus
3R 31820162 3R 20148464..20148661 198..1 990 100 Minus
Blast to na_te.dros performed on 2019-03-16 15:51:06 has no hits.

IP11527.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:52:11 Download gff for IP11527.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 16230574..16231532 198..1157 98 <- Minus
chr3R 16231592..16231788 1..197 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:49:44 Download gff for IP11527.complete
Subject Subject Range Query Range Percent Splice Strand
CG4335-RA 1..1095 8..1102 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:04:43 Download gff for IP11527.complete
Subject Subject Range Query Range Percent Splice Strand
CG4335-RA 1..1095 8..1102 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:55:49 Download gff for IP11527.complete
Subject Subject Range Query Range Percent Splice Strand
CG4335-RA 1..1095 8..1102 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:49:49 Download gff for IP11527.complete
Subject Subject Range Query Range Percent Splice Strand
CG4335-RA 1..1095 8..1102 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:55:29 Download gff for IP11527.complete
Subject Subject Range Query Range Percent Splice Strand
CG4335-RA 1..1095 8..1102 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:51:52 Download gff for IP11527.complete
Subject Subject Range Query Range Percent Splice Strand
CG4335-RA 17..1173 1..1157 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:04:43 Download gff for IP11527.complete
Subject Subject Range Query Range Percent Splice Strand
CG4335-RA 17..1173 1..1157 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:55:49 Download gff for IP11527.complete
Subject Subject Range Query Range Percent Splice Strand
CG4335-RA 42..1198 1..1157 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:49:49 Download gff for IP11527.complete
Subject Subject Range Query Range Percent Splice Strand
CG4335-RA 17..1173 1..1157 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:55:29 Download gff for IP11527.complete
Subject Subject Range Query Range Percent Splice Strand
CG4335-RA 42..1198 1..1157 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:52:11 Download gff for IP11527.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20406615..20407574 198..1157 100 <- Minus
3R 20407634..20407830 1..197 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:52:11 Download gff for IP11527.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20406615..20407574 198..1157 100 <- Minus
3R 20407634..20407830 1..197 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:52:11 Download gff for IP11527.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20406615..20407574 198..1157 100 <- Minus
3R 20407634..20407830 1..197 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:55:49 Download gff for IP11527.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16232337..16233296 198..1157 100 <- Minus
arm_3R 16233356..16233552 1..197 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:24:30 Download gff for IP11527.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20147446..20148405 198..1157 100 <- Minus
3R 20148465..20148661 1..197 100   Minus

IP11527.hyp Sequence

Translation from 0 to 1101

> IP11527.hyp
INMLLLKHPKTSQSIEINEFWLRDHCRCVECLNFETNQRRYDVLDLPADI
MPLDVKYDGMNLQVQWSDAHKSNYDLDFIFDSQLERLIGRRSKSTNLTPW
NRSIILQNERHLRFPLPQLVSSDNEVRSLVESLVRYGIVFIDDVAPTANM
TELALRRVFPLMKTFFGEMWTFSDNPDHADTAYTKLYLGSHTDNTYFCDA
AGLQALHCIEHSGSGGENFFVDGLHVVHELKRRYPAAYDVLCSVQVPGEY
IEKGEHHYHTAPIIQVDPLTQEFVQLRLNVYDRAVFNTIPQAEMAEFYDS
LRQLLLIVRDKQQQWALKLCPGSIVLFDNWRVLHGREAYTGSRTMSGSYV
QRTDFLSKARVLGIID*

IP11527.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4335-PA 364 CG4335-PA 1..364 3..366 1936 100 Plus
CG5321-PC 413 CG5321-PC 44..404 12..362 320 26.7 Plus
CG5321-PB 413 CG5321-PB 44..404 12..362 320 26.7 Plus
CG10814-PA 402 CG10814-PA 36..396 13..362 316 25.1 Plus
CG14630-PA 406 CG14630-PA 39..399 5..362 302 26.4 Plus

IP11527.pep Sequence

Translation from 1 to 1101

> IP11527.pep
INMLLLKHPKTSQSIEINEFWLRDHCRCVECLNFETNQRRYDVLDLPADI
MPLDVKYDGMNLQVQWSDAHKSNYDLDFIFDSQLERLIGRRSKSTNLTPW
NRSIILQNERHLRFPLPQLVSSDNEVRSLVESLVRYGIVFIDDVAPTANM
TELALRRVFPLMKTFFGEMWTFSDNPDHADTAYTKLYLGSHTDNTYFCDA
AGLQALHCIEHSGSGGENFFVDGLHVVHELKRRYPAAYDVLCSVQVPGEY
IEKGEHHYHTAPIIQVDPLTQEFVQLRLNVYDRAVFNTIPQAEMAEFYDS
LRQLLLIVRDKQQQWALKLCPGSIVLFDNWRVLHGREAYTGSRTMSGSYV
QRTDFLSKARVLGIID*

IP11527.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23210-PA 732 GF23210-PA 1..358 3..359 1539 80.7 Plus
Dana\GF19297-PA 405 GF19297-PA 39..399 12..362 331 26.5 Plus
Dana\GF22125-PA 407 GF22125-PA 38..400 12..362 328 26.1 Plus
Dana\GF11192-PA 409 GF11192-PA 35..397 11..362 302 24.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:52:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15479-PA 364 GG15479-PA 1..364 3..366 1825 91.5 Plus
Dere\GG12825-PA 405 GG12825-PA 43..398 19..362 324 25.6 Plus
Dere\GG22499-PA 409 GG22499-PA 36..396 13..362 324 25.7 Plus
Dere\GG17850-PA 469 GG17850-PA 52..406 20..364 308 27.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14171-PA 368 GH14171-PA 1..368 3..366 1431 72.3 Plus
Dgri\GH20273-PA 391 GH20273-PA 13..383 4..362 350 26.6 Plus
Dgri\GH12513-PA 426 GH12513-PA 37..403 6..362 336 27.3 Plus
Dgri\GH11991-PA 408 GH11991-PA 39..405 12..366 333 27.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4335-PA 364 CG4335-PA 1..364 3..366 1936 100 Plus
CG5321-PC 413 CG5321-PC 44..404 12..362 320 26.7 Plus
CG5321-PB 413 CG5321-PB 44..404 12..362 320 26.7 Plus
CG10814-PA 402 CG10814-PA 36..396 13..362 316 25.1 Plus
CG14630-PA 406 CG14630-PA 39..399 5..362 302 26.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10544-PA 367 GI10544-PA 1..367 3..366 1479 73 Plus
Dmoj\GI14867-PA 429 GI14867-PA 52..403 21..362 358 28.7 Plus
Dmoj\GI15613-PA 409 GI15613-PA 40..402 12..362 341 27.2 Plus
Dmoj\GI19441-PA 421 GI19441-PA 51..412 12..362 335 25.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:52:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24093-PA 365 GL24093-PA 1..365 3..366 1623 81.6 Plus
Dper\GL14222-PA 380 GL14222-PA 11..373 3..362 335 27.9 Plus
Dper\GL11099-PA 413 GL11099-PA 48..406 15..362 335 27.3 Plus
Dper\GL20147-PA 431 GL20147-PA 36..366 11..339 317 26.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18117-PA 365 GA18117-PA 1..365 3..366 1620 81.6 Plus
Dpse\GA18803-PA 404 GA18803-PA 37..397 12..362 369 27.9 Plus
Dpse\GA22704-PA 405 GA22704-PA 36..398 12..362 365 28.3 Plus
Dpse\GA10576-PA 413 GA10576-PA 48..406 15..362 332 27.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23194-PA 364 GM23194-PA 1..364 3..366 1887 95.6 Plus
Dsec\GM19110-PA 405 GM19110-PA 38..398 5..362 326 26 Plus
Dsec\GM20285-PA 409 GM20285-PA 36..396 13..362 309 24.9 Plus
Dsec\GM12042-PA 416 GM12042-PA 43..406 11..364 307 26.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20068-PA 364 GD20068-PA 1..364 3..366 1901 96.4 Plus
Dsim\GD17176-PA 416 GD17176-PA 43..406 11..364 317 27.4 Plus
Dsim\GD25765-PA 409 GD25765-PA 36..396 13..362 310 24.9 Plus
Dsim\GD16541-PA 255 GD16541-PA 8..248 130..362 217 26.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24198-PA 367 GJ24198-PA 1..367 3..366 1503 75.7 Plus
Dvir\GJ19528-PA 420 GJ19528-PA 56..407 21..362 334 27.5 Plus
Dvir\GJ21194-PA 392 GJ21194-PA 25..384 14..362 311 25.2 Plus
Dvir\GJ15218-PA 404 GJ15218-PA 30..397 6..362 310 25.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22732-PA 367 GK22732-PA 1..367 3..366 1535 76.6 Plus
Dwil\GK14708-PA 411 GK14708-PA 41..401 12..362 347 27.7 Plus
Dwil\GK16355-PA 408 GK16355-PA 31..401 4..362 320 24.6 Plus
Dwil\GK17984-PA 405 GK17984-PA 38..397 15..362 278 26.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25077-PA 364 GE25077-PA 1..364 3..366 1853 93.4 Plus
Dyak\GE11073-PA 73 GE11073-PA 1..73 294..366 370 95.9 Plus
Dyak\GE16657-PA 405 GE16657-PA 38..398 5..362 331 26.3 Plus
Dyak\GE13368-PA 409 GE13368-PA 36..396 13..362 326 26.2 Plus
Dyak\GE17150-PA 413 GE17150-PA 53..404 21..362 318 27.4 Plus