Clone IP11532 Report

Search the DGRC for IP11532

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:115
Well:32
Vector:pOT2
Associated Gene/TranscriptCSN1a-RA
Protein status:IP11532.pep: gold
Preliminary Size:1095
Sequenced Size:1321

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4697 2005-01-01 Successful iPCR screen
CSN1a 2008-04-29 Release 5.5 accounting
CSN1a 2008-08-15 Release 5.9 accounting
CSN1a 2008-12-18 5.12 accounting

Clone Sequence Records

IP11532.complete Sequence

1321 bp (1321 high quality bases) assembled on 2005-02-26

GenBank Submission: BT022388

> IP11532.complete
ATTTAGACTAAATAAGTAACAAATTTCGGAAAAAGTTTCCGAATTTCCTT
CCCCTTGATTTCCCGATCATCCTAAATTTTGATAACAGCCAATGCCATGG
ATAATGGGGAGGAGACCATGTTGCATCTGCCCAGCTATGCTGATCGCTAT
ACGGACATTCCCCGGCTTATCCGATTGAAGTTCATTGCCCAGGTCTGTCC
GGAGCTAAGTGTTCTTGCCCTCGAGTTGGCCCTCAATCATGTGAAGACCA
CCTACAATGTCAAGTTGTACGACGAACTCTACAAAACACTGTGCGTTGAG
GTGGACAGGAAGTACCCCAACCAGTCCAAGGGGAACGAAGAACTTCATAC
CACTGGTGGAAGCGAGCCAAGTACGTCGAGTGGCAGGGGGAGAGTTGTGG
TTCCCTATGATTCCTACTGGGTGGAGGACAACATTATGGAGGCCACTCTG
ATGCTTCAGGAACTAGACGCCGAACTGAACTTCAAGAAATCGAATTCGGG
CAGCTCCTATGTGCGACGCATTCTAGAGGAGATCGGGGATCACCACGAGA
AGAGTGGAAACTTGCAGATGGCGGTCAAGTTTTATGCTCGAGCCAGGCCC
TACTGTACCAGCAGCGAGAATGTCATCAATATGTTCCGGAATCTGATTAG
GGTATCAATTTATATGGAAAATTGGTGGCATGTCCTCACCTACATTGACG
AGGCCAAGCAGTATGCCTATGGCTTTGAAAATCTGGCCCAGGAGGTTCCA
GCACGTCTAAGCTGCGTCGCCGGTTTGGCTCATTTGGGCCTAAAGATATA
CAAGTCTGCTGCCCAATATTTCCTGAGTACTCCGTATGGGCGTTACGACT
ACGATAAAATCGTGGCACCCGAAGATGTTACTTTATATGCTGGCCTTTGC
GCTCTAGCCACTTTCGATCGGGAAACCTTACAGCTGAACGCTATCAACTC
GGAAGCATTTAAGCCATTCTTTCAGCTTTCGCCAAAAATGTGGACCATAT
TGGCCAAATTCTACGCGGGGGAATTCGATGCCTGTATGACCCTGTTGCGC
GAAATCGAAAATCATGTTAGGCTGGATGTTTATTTGTCTCCCCATGTTAG
TGCGCTTTACGATTTGATAATGGCCAGAATGCTGAAGAAAAGGAACAGGG
AAGTTATGACGGAATCTGTGAAAAAGCGGAAATCAAGATAAGGGCTAAAA
AAAAAGACATCAAAACATAGTATTTATTTGAATTTCGGGGACCCTATTGA
CATAAAGACCCTGTTCTCTTATACAGTAAATAAAGCCCAACCTGAAAGTC
TAAAAAAAAAAAAAAAAAAAA

IP11532.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:42:48
Subject Length Description Subject Range Query Range Score Percent Strand
CSN1a-RA 1301 CSN1a-RA 1..1301 1..1301 6505 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:35:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 14761486..14762786 1..1301 6505 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:09:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14762765..14764067 1..1303 6515 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14762765..14764067 1..1303 6515 100 Plus
Blast to na_te.dros performed on 2019-03-15 17:35:04 has no hits.

IP11532.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:35:43 Download gff for IP11532.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 14761486..14762786 1..1301 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:49:45 Download gff for IP11532.complete
Subject Subject Range Query Range Percent Splice Strand
CSN1a-RA 1..1095 97..1191 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:10:46 Download gff for IP11532.complete
Subject Subject Range Query Range Percent Splice Strand
CSN1a-RA 1..1095 97..1191 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:40:32 Download gff for IP11532.complete
Subject Subject Range Query Range Percent Splice Strand
CSN1a-RA 1..1095 97..1191 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:55:28 Download gff for IP11532.complete
Subject Subject Range Query Range Percent Splice Strand
CSN1a-RA 1..1095 97..1191 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:41:39 Download gff for IP11532.complete
Subject Subject Range Query Range Percent Splice Strand
CSN1a-RA 1..1095 97..1191 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:03:58 Download gff for IP11532.complete
Subject Subject Range Query Range Percent Splice Strand
CSN1a-RA 1..1095 97..1191 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:10:46 Download gff for IP11532.complete
Subject Subject Range Query Range Percent Splice Strand
CSN1a-RA 1..1301 1..1301 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:40:32 Download gff for IP11532.complete
Subject Subject Range Query Range Percent Splice Strand
CSN1a-RA 1..1301 1..1301 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:55:28 Download gff for IP11532.complete
Subject Subject Range Query Range Percent Splice Strand
CSN1a-RA 1..1095 97..1191 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:41:39 Download gff for IP11532.complete
Subject Subject Range Query Range Percent Splice Strand
CSN1a-RA 1..1301 1..1301 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:35:43 Download gff for IP11532.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14762765..14764065 1..1301 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:35:43 Download gff for IP11532.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14762765..14764065 1..1301 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:35:43 Download gff for IP11532.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14762765..14764065 1..1301 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:40:32 Download gff for IP11532.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14762765..14764065 1..1301 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:30:39 Download gff for IP11532.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14762765..14764065 1..1301 100   Plus

IP11532.pep Sequence

Translation from 96 to 1190

> IP11532.pep
MDNGEETMLHLPSYADRYTDIPRLIRLKFIAQVCPELSVLALELALNHVK
TTYNVKLYDELYKTLCVEVDRKYPNQSKGNEELHTTGGSEPSTSSGRGRV
VVPYDSYWVEDNIMEATLMLQELDAELNFKKSNSGSSYVRRILEEIGDHH
EKSGNLQMAVKFYARARPYCTSSENVINMFRNLIRVSIYMENWWHVLTYI
DEAKQYAYGFENLAQEVPARLSCVAGLAHLGLKIYKSAAQYFLSTPYGRY
DYDKIVAPEDVTLYAGLCALATFDRETLQLNAINSEAFKPFFQLSPKMWT
ILAKFYAGEFDACMTLLREIENHVRLDVYLSPHVSALYDLIMARMLKKRN
REVMTESVKKRKSR*

IP11532.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14895-PA 345 GF14895-PA 23..326 5..345 1100 63.9 Plus
Dana\GF10799-PA 524 GF10799-PA 38..402 5..346 636 37.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25130-PA 361 GG25130-PA 1..357 1..360 1675 85.8 Plus
Dere\GG13444-PA 525 GG13444-PA 39..417 5..360 641 36.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10900-PA 417 GH10900-PA 51..379 11..345 1200 66.7 Plus
Dgri\GH16963-PA 537 GH16963-PA 168..413 104..346 550 42.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
CSN1a-PA 364 CG4697-PA 1..364 1..364 1897 100 Plus
CSN1b-PA 525 CG3889-PA 39..403 5..346 642 38.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13139-PA 413 GI13139-PA 30..381 5..350 1178 63.7 Plus
Dmoj\GI11827-PA 526 GI11827-PA 151..404 96..346 523 42.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26006-PA 399 GL26006-PA 23..373 3..349 1147 61.4 Plus
Dper\GL22061-PA 520 GL22061-PA 38..398 5..346 642 38 Plus
Dper\GL24316-PA 467 GL24316-PA 36..362 4..346 512 36.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18363-PA 399 GA18363-PA 24..373 4..349 1152 61.8 Plus
Dpse\GA17754-PA 520 GA17754-PA 38..398 5..346 642 38 Plus
Dpse\GA26568-PA 461 GA26568-PA 30..356 4..346 522 36.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15765-PA 364 GM15765-PA 1..364 1..364 1877 95.6 Plus
Dsec\GM14913-PA 525 GM14913-PA 158..403 104..346 550 42.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23977-PA 364 GD23977-PA 1..364 1..364 1888 96.2 Plus
Dsim\GD12321-PA 293 GD12321-PA 1..171 179..346 370 42.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11753-PA 408 GJ11753-PA 26..375 5..350 1247 67.8 Plus
Dvir\GJ13527-PA 529 GJ13527-PA 154..407 96..346 547 42.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18078-PA 394 GK18078-PA 30..388 6..350 1329 69.9 Plus
Dwil\GK12634-PA 526 GK12634-PA 38..403 5..346 634 37.7 Plus
Dwil\GK22443-PA 198 GK22443-PA 30..172 6..133 375 56.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19048-PA 363 GE19048-PA 1..361 1..362 1710 87.3 Plus
Dyak\GE22547-PA 497 GE22547-PA 158..375 104..346 428 36.2 Plus

IP11532.hyp Sequence

Translation from 96 to 1190

> IP11532.hyp
MDNGEETMLHLPSYADRYTDIPRLIRLKFIAQVCPELSVLALELALNHVK
TTYNVKLYDELYKTLCVEVDRKYPNQSKGNEELHTTGGSEPSTSSGRGRV
VVPYDSYWVEDNIMEATLMLQELDAELNFKKSNSGSSYVRRILEEIGDHH
EKSGNLQMAVKFYARARPYCTSSENVINMFRNLIRVSIYMENWWHVLTYI
DEAKQYAYGFENLAQEVPARLSCVAGLAHLGLKIYKSAAQYFLSTPYGRY
DYDKIVAPEDVTLYAGLCALATFDRETLQLNAINSEAFKPFFQLSPKMWT
ILAKFYAGEFDACMTLLREIENHVRLDVYLSPHVSALYDLIMARMLKKRN
REVMTESVKKRKSR*

IP11532.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
CSN1a-PA 364 CG4697-PA 1..364 1..364 1897 100 Plus
CSN1b-PA 525 CG3889-PA 39..403 5..346 642 38.4 Plus