Clone IP11706 Report

Search the DGRC for IP11706

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:117
Well:6
Vector:pOT2
Associated Gene/TranscriptalphaKap4-RA
Protein status:IP11706.pep: gold
Preliminary Size:1329
Sequenced Size:1528

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10478 2005-01-01 Successful iPCR screen
CG10478 2008-04-29 Release 5.5 accounting
CG10478 2008-08-15 Release 5.9 accounting
CG10478 2008-12-18 5.12 accounting

Clone Sequence Records

IP11706.complete Sequence

1528 bp (1528 high quality bases) assembled on 2005-02-26

GenBank Submission: BT022432

> IP11706.complete
CAATTTTATCGTAGACCAAACACATAGCAAAATTTTAAATACACAATACA
AAATTTTCCATACAAATACAATGCAGAAGCGTAAACGCCGCTTCCTAAAA
AAAGGGCAGAACTTGATGATGCTGCGGACGCTTCGATTGGAAAAAGCCAA
AAAGGCTGAGCTCCAGAAAGAGCTGACTATTTACAATGCTTTAACCAAAT
GTAAATTAACCTCCTCGGAAGTTGTTCCCGACGTCAATAAGTTACTTAAG
AGCAATACGATAGGAAACCTGGTGGAGTCCCTTGGCCACGGAAATAAGAA
CAAAATTCGAGCCGACGCCGCAGATGCTTTAGCTCATATAGCCAGTGGCT
CATCGGAGCACTCAAATTTAATTGCGAAGGCTGGCGCCGTGCCACGATTG
ATTCGCCTTCTTCAGTCACCCGATCCTGAAGTCTGCGAAAAGGGTATATT
GAGTTTGGGGAATCTCTTGCACTTTGCTCCGAACCTCCGTGACTATATCA
TAAGACACGGACTTATGCAAAAGCTGATGTCTATTATTCAGGATAAAAGC
ACTTGCACTTTAATGTTGAGTCATGTAACCTGGGTTCTAAGAAAACTGTG
CATAAGCTCTCAACCATCGCCACCTGATAATGCAGCTGAGATCATTCAGG
CATTGAACATAGTATTGTACAACCCAGAGGCCAACGTTTTAGAGGACGCA
CTTATGGCAGTGCGTAATTTGGCCCATGGAAATGAAACGATTCAAATGTT
ACTTGATTTTGAAGTTGTACCCAGGATCATATACTTGCTGGAGCATCCGA
ACGTTACGGTTCAGAACGCCGCACTGCAAGCCCTAATAAATATAGCAACT
GGATCCGAAGAGCAGATTCAAGAGTTGCTTAACAATAACCTTTTGCCCCA
TTTATCGGCTCTGATGTCCAATAGTGATCCAGATATTCGCTGTCAAGTTC
TTAAGCTTTTGCTAAACATCGCTGACGGAAATATATTCCAAAGGCACGCC
ATTATGAATGCAGGTCTCCTGCATAAAATACTGGAGTGCTTAAAAGCTGA
TGCGATTTCATTAAAATCTGCAGCTGCCTTGACAATCACCACGTTGGCCA
TCGATAAGGACAAGAATCTCCTGTGCTATCTTATGAGACAGGGAGTAATT
CCAGAGTTCTGCAATTTACTCTTCTGCCAGGAAAGAGACATCTTATCTAA
TGTGCTCGATATACTGAGCACTATGCTAGATGTGGATCCATCTTTCTCGG
CAGAGGTGTCCGGCATCATCGAATGGAGTGGAGCTTTAAATAATATCAGG
ATGCTCCAAAGCAGCGAACATGAGGAAATCGCAGCTGTGGCACGTAAAAT
CATTGGTAACTACTTTCCCGCCAAACCACACATCGCAACTAAATTCTAAT
GTGCTTTTATATGAAGTAACATTAATCATACCTTTGTACTTTTCCATCCA
AATTCCAGAACTTTTTCTATATAAAGCGATTTTATATTGAGTGAATATAA
AATGATTTGAAAAAAAAAAAAAAAAAAA

IP11706.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10478.b 2740 CG10478.b 96..1606 1..1511 7555 100 Plus
CG10478-RA 1708 CG10478-RA 96..1606 1..1511 7555 100 Plus
CG10478.a 3635 CG10478.a 96..1606 1..1511 7555 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6002063..6003200 1508..371 5615 99.6 Minus
chr3L 24539361 chr3L 6003268..6003637 370..1 1850 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:09:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6009444..6010584 1511..371 5705 100 Minus
3L 28110227 3L 6010652..6011021 370..1 1850 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6002544..6003684 1511..371 5705 100 Minus
3L 28103327 3L 6003752..6004121 370..1 1850 100 Minus
Blast to na_te.dros performed 2019-03-16 13:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
transib3 2883 transib3 TRANSIB3 2883bp 41..79 57..19 114 76.9 Minus

IP11706.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:26:13 Download gff for IP11706.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6002062..6003200 371..1509 99 <- Minus
chr3L 6003268..6003637 1..370 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:49:56 Download gff for IP11706.complete
Subject Subject Range Query Range Percent Splice Strand
CG10478-RA 1..1329 71..1399 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:10:48 Download gff for IP11706.complete
Subject Subject Range Query Range Percent Splice Strand
CG10478-RA 1..1329 71..1399 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:00:50 Download gff for IP11706.complete
Subject Subject Range Query Range Percent Splice Strand
alphaKap4-RA 1..1329 71..1399 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:55:30 Download gff for IP11706.complete
Subject Subject Range Query Range Percent Splice Strand
CG10478-RA 1..1329 71..1399 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:13:24 Download gff for IP11706.complete
Subject Subject Range Query Range Percent Splice Strand
alphaKap4-RA 1..1329 71..1399 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:04:04 Download gff for IP11706.complete
Subject Subject Range Query Range Percent Splice Strand
CG10478-RA 1..1329 71..1399 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:10:48 Download gff for IP11706.complete
Subject Subject Range Query Range Percent Splice Strand
CG10478-RA 1..1509 1..1509 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:50 Download gff for IP11706.complete
Subject Subject Range Query Range Percent Splice Strand
alphaKap4-RA 1..1509 1..1509 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:55:30 Download gff for IP11706.complete
Subject Subject Range Query Range Percent Splice Strand
CG10478-RA 1..1329 71..1399 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:24 Download gff for IP11706.complete
Subject Subject Range Query Range Percent Splice Strand
alphaKap4-RA 1..1509 1..1509 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:26:13 Download gff for IP11706.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6009446..6010584 371..1509 100 <- Minus
3L 6010652..6011021 1..370 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:26:13 Download gff for IP11706.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6009446..6010584 371..1509 100 <- Minus
3L 6010652..6011021 1..370 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:26:13 Download gff for IP11706.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6009446..6010584 371..1509 100 <- Minus
3L 6010652..6011021 1..370 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:50 Download gff for IP11706.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6002546..6003684 371..1509 100 <- Minus
arm_3L 6003752..6004121 1..370 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:30:42 Download gff for IP11706.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6002546..6003684 371..1509 100 <- Minus
3L 6003752..6004121 1..370 100   Minus

IP11706.hyp Sequence

Translation from 0 to 1398

> IP11706.hyp
NFIVDQTHSKILNTQYKIFHTNTMQKRKRRFLKKGQNLMMLRTLRLEKAK
KAELQKELTIYNALTKCKLTSSEVVPDVNKLLKSNTIGNLVESLGHGNKN
KIRADAADALAHIASGSSEHSNLIAKAGAVPRLIRLLQSPDPEVCEKGIL
SLGNLLHFAPNLRDYIIRHGLMQKLMSIIQDKSTCTLMLSHVTWVLRKLC
ISSQPSPPDNAAEIIQALNIVLYNPEANVLEDALMAVRNLAHGNETIQML
LDFEVVPRIIYLLEHPNVTVQNAALQALINIATGSEEQIQELLNNNLLPH
LSALMSNSDPDIRCQVLKLLLNIADGNIFQRHAIMNAGLLHKILECLKAD
AISLKSAAALTITTLAIDKDKNLLCYLMRQGVIPEFCNLLFCQERDILSN
VLDILSTMLDVDPSFSAEVSGIIEWSGALNNIRMLQSSEHEEIAAVARKI
IGNYFPAKPHIATKF*

IP11706.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:40:47
Subject Length Description Subject Range Query Range Score Percent Strand
alphaKap4-PA 442 CG10478-PA 1..442 24..465 2221 100 Plus
Kap-alpha3-PD 514 CG9423-PD 69..480 45..455 694 39.5 Plus
Kap-alpha3-PC 514 CG9423-PC 69..480 45..455 694 39.5 Plus
Kap-alpha3-PB 514 CG9423-PB 69..480 45..455 694 39.5 Plus
Kap-alpha3-PA 514 CG9423-PA 69..480 45..455 694 39.5 Plus

IP11706.pep Sequence

Translation from 70 to 1398

> IP11706.pep
MQKRKRRFLKKGQNLMMLRTLRLEKAKKAELQKELTIYNALTKCKLTSSE
VVPDVNKLLKSNTIGNLVESLGHGNKNKIRADAADALAHIASGSSEHSNL
IAKAGAVPRLIRLLQSPDPEVCEKGILSLGNLLHFAPNLRDYIIRHGLMQ
KLMSIIQDKSTCTLMLSHVTWVLRKLCISSQPSPPDNAAEIIQALNIVLY
NPEANVLEDALMAVRNLAHGNETIQMLLDFEVVPRIIYLLEHPNVTVQNA
ALQALINIATGSEEQIQELLNNNLLPHLSALMSNSDPDIRCQVLKLLLNI
ADGNIFQRHAIMNAGLLHKILECLKADAISLKSAAALTITTLAIDKDKNL
LCYLMRQGVIPEFCNLLFCQERDILSNVLDILSTMLDVDPSFSAEVSGII
EWSGALNNIRMLQSSEHEEIAAVARKIIGNYFPAKPHIATKF*

IP11706.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16531-PA 514 GF16531-PA 92..480 45..432 691 40.3 Plus
Dana\GF23594-PA 547 GF23594-PA 124..515 45..432 461 30.9 Plus
Dana\GF15741-PA 522 GF15741-PA 95..486 45..432 313 25.9 Plus
Dana\GF21735-PA 602 GF21735-PA 126..537 26..433 270 24.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14095-PA 441 GG14095-PA 1..432 1..432 1796 78.9 Plus
Dere\GG17355-PA 514 GG17355-PA 92..480 45..432 694 40.5 Plus
Dere\GG16059-PA 549 GG16059-PA 126..517 45..432 468 30.6 Plus
Dere\GG10083-PA 522 GG10083-PA 95..486 45..432 318 25.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19298-PA 513 GH19298-PA 63..480 14..432 702 39.2 Plus
Dgri\GH14657-PA 549 GH14657-PA 126..517 45..432 460 30.1 Plus
Dgri\GH11093-PA 432 GH11093-PA 38..389 45..398 332 26.1 Plus
Dgri\GH11072-PA 522 GH11072-PA 95..486 45..432 319 25.4 Plus
Dgri\GH20236-PA 464 GH20236-PA 44..432 45..432 256 23.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:14
Subject Length Description Subject Range Query Range Score Percent Strand
alphaKap4-PA 442 CG10478-PA 1..442 1..442 2221 100 Plus
Kap-alpha3-PD 514 CG9423-PD 69..480 22..432 694 39.5 Plus
Kap-alpha3-PC 514 CG9423-PC 69..480 22..432 694 39.5 Plus
Kap-alpha3-PB 514 CG9423-PB 69..480 22..432 694 39.5 Plus
Kap-alpha3-PA 514 CG9423-PA 69..480 22..432 694 39.5 Plus
Kap-alpha1-PA 543 CG8548-PA 120..511 45..432 456 30.4 Plus
Pen-PA 522 CG4799-PA 63..486 12..432 384 25.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23514-PA 513 GI23514-PA 92..480 45..432 693 40.8 Plus
Dmoj\GI11643-PA 542 GI11643-PA 119..510 45..432 466 30.4 Plus
Dmoj\GI17589-PA 522 GI17589-PA 95..495 45..441 371 27 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21493-PA 514 GL21493-PA 92..480 45..432 685 40.1 Plus
Dper\GL15735-PA 548 GL15735-PA 125..516 45..432 453 30.1 Plus
Dper\GL18958-PA 522 GL18958-PA 63..486 12..432 301 25.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21775-PB 514 GA21775-PB 92..480 45..432 685 40.1 Plus
Dpse\GA21775-PA 514 GA21775-PA 92..480 45..432 685 40.1 Plus
Dpse\GA21156-PA 548 GA21156-PA 125..516 45..432 453 30.1 Plus
Dpse\GA18440-PA 522 GA18440-PA 63..486 12..432 301 25.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13879-PA 442 GM13879-PA 1..442 1..442 1899 84.8 Plus
Dsec\GM26241-PA 514 GM26241-PA 92..480 45..432 708 41 Plus
Dsec\GM19652-PA 543 GM19652-PA 120..511 45..432 469 30.6 Plus
Dsec\GM17916-PA 522 GM17916-PA 95..486 45..432 315 25.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13162-PA 447 GD13162-PA 1..433 1..433 1845 84.1 Plus
Dsim\GD20781-PA 501 GD20781-PA 117..467 83..432 662 41.8 Plus
Dsim\GD14829-PA 543 GD14829-PA 120..511 45..432 468 30.6 Plus
Dsim\GD23655-PA 524 GD23655-PA 135..488 83..432 304 26.7 Plus
Dsim\GD17931-PA 171 GD17931-PA 15..169 165..317 217 36.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10266-PA 513 GJ10266-PA 92..480 45..432 690 41.1 Plus
Dvir\GJ11324-PA 556 GJ11324-PA 133..524 45..432 457 30.1 Plus
Dvir\GJ17933-PA 521 GJ17933-PA 128..485 79..432 331 27.5 Plus
Dvir\GJ14921-PA 470 GJ14921-PA 119..434 121..432 260 25.9 Plus
Dvir\GJ15941-PA 447 GJ15941-PA 118..367 129..367 159 25.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14517-PA 514 GK14517-PA 63..480 14..432 684 38.5 Plus
Dwil\GK17499-PA 565 GK17499-PA 142..533 45..432 478 31.4 Plus
Dwil\GK18399-PA 522 GK18399-PA 129..486 79..432 317 27.3 Plus
Dwil\GK17501-PA 535 GK17501-PA 92..503 27..432 310 28 Plus
Dwil\GK23224-PA 491 GK23224-PA 78..474 45..436 305 26.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20518-PA 433 GE20518-PA 1..431 1..432 1762 77.8 Plus
Dyak\GE24760-PA 514 GE24760-PA 92..480 45..432 700 40.8 Plus
Dyak\GE19625-PA 549 GE19625-PA 126..517 45..432 470 30.6 Plus
Dyak\GE18896-PA 522 GE18896-PA 63..486 12..432 342 25.6 Plus