Clone IP11728 Report

Search the DGRC for IP11728

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:117
Well:28
Vector:pOT2
Associated Gene/TranscriptCG11983-RA
Protein status:IP11728.pep: gold
Preliminary Size:1417
Sequenced Size:1682

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11983 2005-01-01 Successful iPCR screen
CG11983 2008-04-29 Release 5.5 accounting
CG11983 2008-08-15 Release 5.9 accounting
CG11983 2008-12-18 5.12 accounting

Clone Sequence Records

IP11728.complete Sequence

1682 bp (1682 high quality bases) assembled on 2006-01-24

GenBank Submission: BT024309

> IP11728.complete
TCAAATTGTTTAAATTCCCATTTGACTGAAAATCTGACTTAACCGTTTAA
GAACTCCGCCAAAATGCGTAAAGTCAATTGAAGTGAAGAATATAACGCCG
TGACCAACGAAATAATATGACACACGAAGGAAGTAACGATTTTGTGGTGC
TCACCGACGTGGTGCGCAAGCAATATGTGCTCTATTTGGAGCGCCAGCTG
CAGGAGAATGTCTGCGCCTGGGCCAACCAATCCCGTAATCGCCACAAGCC
CACAGCCTGGGCGTGCATTCCCGCGAGCTTGGAGCAACTGGAGAACAAGG
CGAAGAAGGCTTCCATGGCGGCACAGATCTACCAAAGAGCCATGGTCAAA
ACGATAGCTGCGGTACGTAGGAACACTCAGGAATGCCGTTTGGCCAACAT
TCTATTTGAACAAATGCAGCATGCAGCTGGAGAGGATGCTGTGCCCGTAA
AAACAGACCACCGTCTGGTGGATAAGGCCACACAAACAACCGTCATAGAA
GCCCAGAATGGCCACATAACTCCTACGGAGGACTACGATGATGATAGCTA
TGAGCTGCGTAGAAAAATCGATATGTTTCAGGCTAGTCTCGAACGGTCGG
AAGTTCAGAACGAAACGCATTGCCCACATTGCCGTAGTAAGATCATGACC
CCAGAGAATAAGCCCCTAGCCAATCAAGAATCTCTCTACTCCGAAACCGA
AGATGCTGTGGCCCAGGAGTTGGCCATGTTGTTTGGAGAAGAGCCTACTG
ATCTTAATCATATATTCGGCATCGAACCAACTGCTGTTACTGACGATCCG
CAGATCTCGGCCATACTAAAGGAAATAGCGAATGCGGAACTACCTGAAAA
AATTGAGCATCCACCCACATCCCCAACCGCCACACCACCAACTGGGCATC
ACAGCGAGGTGGATCTTCGCCAGAGTCGCTGGCCTTGCGAACTCTACGCC
CAGAGGAGGCGTCTCAATGCCTGTTTAGTTCGCTTACTGGAAGCGGATTG
GCGGTGCGAGGACCGCTTGAGATATAAGTTTCACCTGATTTTTGGCGAAG
ACAGCGATGATGAGTTCGCAAACCAGTTATCCAGCCCGTCAATTGATTTA
GTGGACGAAGTTCTGCTGGCCAGCTGCTTGCTTCGTATTCGCCCATGGAT
TGTACGTCATTTGATGTCTCCCCTGGAGGAGGGCCTTATCGCCAATCGAT
TTCTGTTCAAGAAGCTAGCCAAGATGCTGGCGCACTCCATTGTCATGGTC
AATCCATATTGCTCCGAGCTGGAGATCAAGCAGGCTGTTGAGCACTTGTT
CTGCCTTAGACCTAGAGGAATCCAGAGCGCATATGATCTGGACAATCTGC
CACCCTTGGAGGTCTCAAAATTCGAAGTTTAAGGACAATTTACCGATTTT
CAGTTTTAAAATATCAATATAGTTATTAAGATGCGAGAAACTATGACCCT
CAGGATAATACTAGTATTTACGAATGATTCTAAGCAATGAGACAATGATT
TTCGATTGAACCTACAACGAATTTAGTGAAAGCAAAATGGAATATGTTCT
TCAGTTTAATACTCAAATATAAAACTCTGTAAAAGTAAGTTATATACATA
CATGAATGCTTCCATGTCCATACGCTAAAAGTTGTGTGTCGAATAAAGCC
AAAGCACAAAGACTAAAAAAAAAAAAAAAAAA

IP11728.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG11983-RA 1813 CG11983-RA 150..1813 1..1664 8320 100 Plus
CG11983.b 1755 CG11983.b 96..1755 1..1664 8235 99.7 Plus
CG11983.a 1742 CG11983.a 448..1742 370..1664 6475 100 Plus
CG11983.a 1742 CG11983.a 96..448 1..353 1765 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4834857..4836168 353..1664 6545 99.9 Plus
chr3R 27901430 chr3R 4834607..4834799 161..353 950 99.5 Plus
chr3R 27901430 chr3R 4834364..4834526 1..163 800 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:10:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9008963..9010275 353..1665 6565 100 Plus
3R 32079331 3R 9008713..9008905 161..353 965 100 Plus
3R 32079331 3R 9008470..9008632 1..163 815 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8749794..8751106 353..1665 6565 100 Plus
3R 31820162 3R 8749544..8749736 161..353 965 100 Plus
3R 31820162 3R 8749301..8749463 1..163 815 100 Plus
Blast to na_te.dros performed 2019-03-16 02:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 4751..4844 1482..1569 114 63.2 Plus

IP11728.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:03:39 Download gff for IP11728.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4834364..4834524 1..161 99 -> Plus
chr3R 4834608..4834799 162..353 99 -> Plus
chr3R 4834858..4836168 354..1664 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:50:04 Download gff for IP11728.complete
Subject Subject Range Query Range Percent Splice Strand
CG11983-RA 1..1266 117..1382 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:35:10 Download gff for IP11728.complete
Subject Subject Range Query Range Percent Splice Strand
CG11983-RA 1..1266 117..1382 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:14:13 Download gff for IP11728.complete
Subject Subject Range Query Range Percent Splice Strand
CG11983-RA 1..1266 117..1382 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:09:38 Download gff for IP11728.complete
Subject Subject Range Query Range Percent Splice Strand
CG11983-RA 1..1266 117..1382 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:56:09 Download gff for IP11728.complete
Subject Subject Range Query Range Percent Splice Strand
CG11983-RA 1..1266 117..1382 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:06:32 Download gff for IP11728.complete
Subject Subject Range Query Range Percent Splice Strand
CG11983-RA 36..1417 1..1382 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:35:10 Download gff for IP11728.complete
Subject Subject Range Query Range Percent Splice Strand
CG11983-RA 36..1699 1..1664 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:14:13 Download gff for IP11728.complete
Subject Subject Range Query Range Percent Splice Strand
CG11983-RA 150..1813 1..1664 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:09:39 Download gff for IP11728.complete
Subject Subject Range Query Range Percent Splice Strand
CG11983-RA 36..1417 1..1382 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:56:09 Download gff for IP11728.complete
Subject Subject Range Query Range Percent Splice Strand
CG11983-RA 150..1813 1..1664 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:03:39 Download gff for IP11728.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9008470..9008630 1..161 100 -> Plus
3R 9008714..9008905 162..353 100 -> Plus
3R 9008964..9010274 354..1664 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:03:39 Download gff for IP11728.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9008470..9008630 1..161 100 -> Plus
3R 9008714..9008905 162..353 100 -> Plus
3R 9008964..9010274 354..1664 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:03:39 Download gff for IP11728.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9008470..9008630 1..161 100 -> Plus
3R 9008714..9008905 162..353 100 -> Plus
3R 9008964..9010274 354..1664 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:14:13 Download gff for IP11728.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4834436..4834627 162..353 100 -> Plus
arm_3R 4834192..4834352 1..161 100 -> Plus
arm_3R 4834686..4835996 354..1664 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:59:02 Download gff for IP11728.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8749301..8749461 1..161 100 -> Plus
3R 8749795..8751105 354..1664 100   Plus
3R 8749545..8749736 162..353 100 -> Plus

IP11728.pep Sequence

Translation from 116 to 1381

> IP11728.pep
MTHEGSNDFVVLTDVVRKQYVLYLERQLQENVCAWANQSRNRHKPTAWAC
IPASLEQLENKAKKASMAAQIYQRAMVKTIAAVRRNTQECRLANILFEQM
QHAAGEDAVPVKTDHRLVDKATQTTVIEAQNGHITPTEDYDDDSYELRRK
IDMFQASLERSEVQNETHCPHCRSKIMTPENKPLANQESLYSETEDAVAQ
ELAMLFGEEPTDLNHIFGIEPTAVTDDPQISAILKEIANAELPEKIEHPP
TSPTATPPTGHHSEVDLRQSRWPCELYAQRRRLNACLVRLLEADWRCEDR
LRYKFHLIFGEDSDDEFANQLSSPSIDLVDEVLLASCLLRIRPWIVRHLM
SPLEEGLIANRFLFKKLAKMLAHSIVMVNPYCSELEIKQAVEHLFCLRPR
GIQSAYDLDNLPPLEVSKFEV*

IP11728.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16576-PA 425 GF16576-PA 1..425 1..421 1417 66 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14538-PA 423 GG14538-PA 4..423 2..421 1926 88.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:20:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19380-PA 397 GH19380-PA 4..397 6..421 1096 56.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11983-PB 421 CG11983-PB 1..421 1..421 2202 100 Plus
CG11983-PA 421 CG11983-PA 1..421 1..421 2202 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22583-PA 414 GI22583-PA 7..413 6..420 1163 56.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12114-PA 427 GL12114-PA 1..426 1..420 1390 64.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11310-PA 427 GA11310-PA 1..426 1..420 1386 63.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23779-PA 421 GM23779-PA 1..421 1..421 2189 96.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18589-PA 421 GD18589-PA 1..421 1..421 2088 94.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10304-PA 415 GJ10304-PA 3..414 2..420 1188 56.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11677-PA 420 GK11677-PA 1..409 1..418 1215 60.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25923-PA 423 GE25923-PA 4..423 2..421 1942 89.3 Plus

IP11728.hyp Sequence

Translation from 116 to 1381

> IP11728.hyp
MTHEGSNDFVVLTDVVRKQYVLYLERQLQENVCAWANQSRNRHKPTAWAC
IPASLEQLENKAKKASMAAQIYQRAMVKTIAAVRRNTQECRLANILFEQM
QHAAGEDAVPVKTDHRLVDKATQTTVIEAQNGHITPTEDYDDDSYELRRK
IDMFQASLERSEVQNETHCPHCRSKIMTPENKPLANQESLYSETEDAVAQ
ELAMLFGEEPTDLNHIFGIEPTAVTDDPQISAILKEIANAELPEKIEHPP
TSPTATPPTGHHSEVDLRQSRWPCELYAQRRRLNACLVRLLEADWRCEDR
LRYKFHLIFGEDSDDEFANQLSSPSIDLVDEVLLASCLLRIRPWIVRHLM
SPLEEGLIANRFLFKKLAKMLAHSIVMVNPYCSELEIKQAVEHLFCLRPR
GIQSAYDLDNLPPLEVSKFEV*

IP11728.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG11983-PB 421 CG11983-PB 1..421 1..421 2202 100 Plus
CG11983-PA 421 CG11983-PA 1..421 1..421 2202 100 Plus