Clone IP11827 Report

Search the DGRC for IP11827

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:118
Well:27
Vector:pOT2
Associated Gene/TranscriptCG11913-RB
Protein status:IP11827.pep: gold
Preliminary Size:1509
Sequenced Size:1751

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11913 2005-01-01 Successful iPCR screen
CG11913 2008-04-29 Release 5.5 accounting
CG11913 2008-08-15 Release 5.9 accounting
CG11913 2008-12-18 5.12 accounting

Clone Sequence Records

IP11827.complete Sequence

1751 bp (1751 high quality bases) assembled on 2006-01-24

GenBank Submission: BT024310

> IP11827.complete
TTTTTTTTAATACTCCGGTAATCATGTCTGGCGGAACGCAAGGGATTCGC
AAGCTGGCGGATAAGCTATTCACACCCAACGAAATTAGACGTTTCCAGGC
ATACAAGAACCGCCTCAGTGAAAAGTATTTGACCGTGGAGGGCTTAAAGT
CCACCTTCAAGAGACCGGATTTGGGAAAACTATTCAACCGTCGCGTGTTT
TCATCAAACAAAGAAGATTGCCCCGAAGAGCCAAAAGTTAAGGAATGTGA
CCCCAGCTGGGATGAGCTGTATCCTCCAGGCCCGCCATACGAGCCCTATG
ACACACACTACTGGTATCCAGATCCCGAGTTCATGAATAAACAACAGTAT
ATAGTTTGGTATCCCGAAGGTGACGAGTGGAAAAAGCGTCCCAATTTTAA
GGGAAAACAGATTCCACCCGTTGATCGTACATTTCGCACCAAGCTCATAA
ACTTTGGACCCGCGCATCCGGCGGCACACGGAGTACTCCGCATGATCCTC
GAGCTGGATAATGAAACGGTGCTGAATGCCGATCCGCACATTGGGCTACT
GCATCGCGGAACCGAGAAACTGATCGAGTACAAGACGTACACTCAAGCAC
TGCCCTATTTCGATCGTCTGGACTATGTGTCCTGCATGGCCAATGAGTTG
GCCTACTGCTTGGCGGTGGAGAAGTTGCTGAATGTGGAGGTTCCACGCCG
GGCCAAGTACATACGCACCATGTTTTCGGAGATAATGAGGCTGACGAATC
ACACGATGGCCATTGGTTCGTCGGTACTGGACTGTGGAGCTATAACTCCA
CTCTTTTGGCTGTTCGAGGAACGTGAGAAGTTGTATGAGTTTTCGGAACG
CGCTTCGGGAGCTCGTCTCCATGCCGCCTACATTCGACCGGGGGGCGTGG
CCAGTGATATACCTCTAGGGTTTCTCCACGATTTGTATCAGTTTATCAAT
CAATTCAACGAACGATTGGACGAAGTGGAGGACGTAGTGACCGATAATCG
CATCTGGCGTATGCGTAATATTGGCATTGGAGTCATATCCGCACACGATG
CCTTAAACTATGGATGCACTGGACCCGTTCTGAGGGCCACCGGCGTAAAG
TGGGATTTGCGTAAGCAACAGCCATACGATGCCTATGACGAGATGGATTT
TGACGTGGTTGTGGGATCGAATGGAGACTGCTACGATCGCTACTTGGTGC
GCATGCGAGAAATGCGCGAGTCGGTGAATATCATCAAGCAATGCATCGAC
GCCATGCCACCGGGTGAGATCAAGGTGGATGATCTGAAGATCTGCCCTCC
GCAACGAAGCAAGATGAAGGAGGGCATGGAGGATCTGATCCATCATTTCA
AGCACTTCTCGCAAGGATTCCGGGTGCCTCCGGGACAGACGTACTGTGCC
GTTGAATCGCCCAAGGGTGAATTCGGAGCATTCCTCATCTCCGATGGTTC
ATCGCGTCCCTATCGCTGCAAGATTCGTCCAGCTTCCTATGCTCATCTAG
CCCTCATGGCCAAAATGGCACCCGCACACCTGCTGGCCGATGTTGTGGCC
ATTATTGGATCGCTGGACATCGTTTTTGGTGAAATCGACCGTTAGTCAGG
GTTTGGTAATTTCAATTACATTTATTATAAACCCCATTTTGTGTATGAAC
GTCAAATGCCCAAAACCTAAATAAAACGGAAGCCTATTTATGCAGCATGT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A

IP11827.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG11913-RB 1865 CG11913-RB 87..1788 1..1702 8510 100 Plus
CG1970-RA 1663 CG1970-RA 452..612 465..625 250 77 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 21181654..21183140 214..1700 7285 99.3 Plus
chr3R 27901430 chr3R 21181383..21181598 1..216 1035 98.6 Plus
chr4 1351717 chr4 590616..590714 625..527 240 82.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:11:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25358548..25360036 214..1702 7445 100 Plus
3R 32079331 3R 25358285..25358500 1..216 1080 100 Plus
4 1348131 4 570067..570165 625..527 240 82.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 25099379..25100867 214..1702 7445 100 Plus
3R 31820162 3R 25099116..25099331 1..216 1080 100 Plus
4 1331231 4 570067..570165 625..527 240 82.8 Minus
Blast to na_te.dros performed on 2019-03-15 23:56:04 has no hits.

IP11827.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:57:06 Download gff for IP11827.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 21181383..21181598 1..216 98 -> Plus
chr3R 21181657..21183140 217..1700 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:50:32 Download gff for IP11827.complete
Subject Subject Range Query Range Percent Splice Strand
CG11913-RB 1..1572 24..1595 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:35:13 Download gff for IP11827.complete
Subject Subject Range Query Range Percent Splice Strand
CG11913-RB 1..1572 24..1595 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:09:49 Download gff for IP11827.complete
Subject Subject Range Query Range Percent Splice Strand
CG11913-RB 1..1572 24..1595 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:09:45 Download gff for IP11827.complete
Subject Subject Range Query Range Percent Splice Strand
CG11913-RB 1..1572 24..1595 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:51:38 Download gff for IP11827.complete
Subject Subject Range Query Range Percent Splice Strand
CG11913-RB 1..1572 24..1595 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:06:37 Download gff for IP11827.complete
Subject Subject Range Query Range Percent Splice Strand
CG11913-RB 1..1700 1..1700 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:35:13 Download gff for IP11827.complete
Subject Subject Range Query Range Percent Splice Strand
CG11913-RB 1..1700 1..1700 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:09:49 Download gff for IP11827.complete
Subject Subject Range Query Range Percent Splice Strand
CG11913-RB 1..1700 1..1700 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:09:45 Download gff for IP11827.complete
Subject Subject Range Query Range Percent Splice Strand
CG11913-RB 1..1700 1..1700 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:51:38 Download gff for IP11827.complete
Subject Subject Range Query Range Percent Splice Strand
CG11913-RB 1..1700 1..1700 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:57:06 Download gff for IP11827.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25358285..25358500 1..216 100 -> Plus
3R 25358551..25360034 217..1700 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:57:06 Download gff for IP11827.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25358285..25358500 1..216 100 -> Plus
3R 25358551..25360034 217..1700 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:57:06 Download gff for IP11827.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25358285..25358500 1..216 100 -> Plus
3R 25358551..25360034 217..1700 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:09:49 Download gff for IP11827.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21184007..21184222 1..216 100 -> Plus
arm_3R 21184273..21185756 217..1700 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:59:05 Download gff for IP11827.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25099116..25099331 1..216 100 -> Plus
3R 25099382..25100865 217..1700 100   Plus

IP11827.pep Sequence

Translation from 2 to 1594

> IP11827.pep
FFNTPVIMSGGTQGIRKLADKLFTPNEIRRFQAYKNRLSEKYLTVEGLKS
TFKRPDLGKLFNRRVFSSNKEDCPEEPKVKECDPSWDELYPPGPPYEPYD
THYWYPDPEFMNKQQYIVWYPEGDEWKKRPNFKGKQIPPVDRTFRTKLIN
FGPAHPAAHGVLRMILELDNETVLNADPHIGLLHRGTEKLIEYKTYTQAL
PYFDRLDYVSCMANELAYCLAVEKLLNVEVPRRAKYIRTMFSEIMRLTNH
TMAIGSSVLDCGAITPLFWLFEEREKLYEFSERASGARLHAAYIRPGGVA
SDIPLGFLHDLYQFINQFNERLDEVEDVVTDNRIWRMRNIGIGVISAHDA
LNYGCTGPVLRATGVKWDLRKQQPYDAYDEMDFDVVVGSNGDCYDRYLVR
MREMRESVNIIKQCIDAMPPGEIKVDDLKICPPQRSKMKEGMEDLIHHFK
HFSQGFRVPPGQTYCAVESPKGEFGAFLISDGSSRPYRCKIRPASYAHLA
LMAKMAPAHLLADVVAIIGSLDIVFGEIDR*

IP11827.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16933-PA 519 GF16933-PA 2..519 13..530 2366 83.8 Plus
Dana\GF19015-PA 470 GF19015-PA 44..470 104..530 1563 65.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11402-PA 523 GG11402-PA 1..523 8..530 2726 96.2 Plus
Dere\GG16443-PA 468 GG16443-PA 42..468 104..530 1572 66 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18233-PA 529 GH18233-PA 1..529 8..530 2133 74.6 Plus
Dgri\GH23924-PA 469 GH23924-PA 43..469 104..530 1576 66.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
ND-49L-PB 523 CG11913-PB 1..523 8..530 2817 100 Plus
ND-49-PB 468 CG1970-PB 42..468 104..530 1537 65.5 Plus
ND-49-PA 468 CG1970-PA 42..468 104..530 1537 65.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10189-PA 478 GI10189-PA 6..478 58..530 1965 76.1 Plus
Dmoj\GI14091-PA 449 GI14091-PA 7..449 88..530 1584 64.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12099-PA 495 GL12099-PA 2..495 35..530 2101 78.7 Plus
Dper\GL18172-PA 452 GL18172-PA 26..452 104..530 1568 65.5 Plus
Dper\GL16671-PA 127 GL16671-PA 47..123 104..180 183 45.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11278-PA 517 GA11278-PA 3..517 14..530 2168 78.2 Plus
Dpse\GA25154-PA 440 GA25154-PA 14..440 104..530 1567 65.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17844-PA 502 GM17844-PA 1..502 8..530 2615 94.3 Plus
Dsec\GM26777-PA 468 GM26777-PA 42..468 104..530 1567 65.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21215-PA 194 GD21215-PA 1..194 337..530 1035 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23477-PA 501 GJ23477-PA 1..501 15..530 2037 73.2 Plus
Dvir\GJ13840-PA 468 GJ13840-PA 42..468 104..530 1569 66.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11092-PA 510 GK11092-PA 3..510 14..530 2062 74.7 Plus
Dwil\GK13585-PA 469 GK13585-PA 43..469 104..530 1568 65 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23599-PA 523 GE23599-PA 1..523 8..530 2658 96 Plus
Dyak\GE14510-PA 468 GE14510-PA 42..468 104..530 1567 65.7 Plus

IP11827.hyp Sequence

Translation from 2 to 1594

> IP11827.hyp
FFNTPVIMSGGTQGIRKLADKLFTPNEIRRFQAYKNRLSEKYLTVEGLKS
TFKRPDLGKLFNRRVFSSNKEDCPEEPKVKECDPSWDELYPPGPPYEPYD
THYWYPDPEFMNKQQYIVWYPEGDEWKKRPNFKGKQIPPVDRTFRTKLIN
FGPAHPAAHGVLRMILELDNETVLNADPHIGLLHRGTEKLIEYKTYTQAL
PYFDRLDYVSCMANELAYCLAVEKLLNVEVPRRAKYIRTMFSEIMRLTNH
TMAIGSSVLDCGAITPLFWLFEEREKLYEFSERASGARLHAAYIRPGGVA
SDIPLGFLHDLYQFINQFNERLDEVEDVVTDNRIWRMRNIGIGVISAHDA
LNYGCTGPVLRATGVKWDLRKQQPYDAYDEMDFDVVVGSNGDCYDRYLVR
MREMRESVNIIKQCIDAMPPGEIKVDDLKICPPQRSKMKEGMEDLIHHFK
HFSQGFRVPPGQTYCAVESPKGEFGAFLISDGSSRPYRCKIRPASYAHLA
LMAKMAPAHLLADVVAIIGSLDIVFGEIDR*

IP11827.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:42:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11913-PB 523 CG11913-PB 1..523 8..530 2817 100 Plus
CG1970-PB 468 CG1970-PB 42..468 104..530 1537 65.5 Plus
CG1970-PA 468 CG1970-PA 42..468 104..530 1537 65.5 Plus