Clone IP11840 Report

Search the DGRC for IP11840

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:118
Well:40
Vector:pOT2
Associated Gene/TranscriptCG13074-RA
Protein status:IP11840.pep: gold
Preliminary Size:1356
Sequenced Size:1551

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13074 2005-01-01 Successful iPCR screen
CG13074 2008-04-29 Release 5.5 accounting
CG13074 2008-08-15 Release 5.9 accounting
CG13074 2008-12-18 5.12 accounting

Clone Sequence Records

IP11840.complete Sequence

1551 bp (1551 high quality bases) assembled on 2005-04-11

GenBank Submission: BT022524

> IP11840.complete
GAAAATGGACGTACTATCGCATTACAGCTCACCCATAGTTGAATTTCCGG
CCACGCAGCCTTTGGAGAAGCAGCATGCCCTGGTGGACAACTGTACGGGC
ACCGATCCACCTCCTCCCAGCCAAGATGCCGCCACAGGAACGCAGGAGAA
GCTGCATGTGGCCACACAAACAGAGCAACGAGTAGTTAGTAGTAAGGATG
TGGAATACGATGAGAGGGCTTTGGCGAAGTGGTTGCGACAGATCTGCCCC
ATGGTCGAACGGGAGCTAATGAATCCCACGCCTCTGATGGAGGATCTAAC
GATGAGCCAGTGCCGCTTGGAGGAGAAACTGCAGGTGTACACGTACCAGA
AACTGATAATGGGTGGTGCAGAAAACTCGCAAGGACTGGCTATCTGGCTG
TGTGTGCATACGAATAACGCCCCAGTTCTGGTGGCCACCACTGTAGCTCC
CCATGATGACTGGTGCGAGCATGTGGATCAGCAGCTAAAACTCTTTGTTC
CCCAAAGAATGTCCGTTGGCAACTTGGTGATTTATACAGAGGCCAAAACT
CTACCCCTAAAATCCTGTTTGCGAAGTCTGTGCACAAATCCGTTCAACAA
GACCATGTTCGCTGGTTCGACCATGGACGGAGAGCTCTTCATCTGGTTAT
ATGAGCAGGCGAGGGGTTCCGATTCCAGCGTCGATATCAAACAGCTATAC
AGTGTATCCTCCACCCAGGGAGCTGCAGTGGCTCTGGACTGGCCGCGGGA
ACATCTTCTGTTGGCCTGCTTTGCCAATGGCAGCGTTCGCCAGTGGGATT
TAAGCAGGCAGATGGCTCTGGATTGGGAATACACCCTGCCCGCAACGGTT
AGCTCAGAGCCTACGGCAATGGTGACCCTTGGTCTGGATGACTTCGTCGT
GGGCACTAACGATGGTGGCGTCTATCGCTGCTGGAACACCGGCCGGCAAA
CCGCAGCCATCAAGCAGATCAAATTGTTGGCCCTACGGCGACATCGATTC
ATGGTTTCCACCCTCCTCCGTACCGAAATGGAGGGCAACCTGTTCGTCCT
GAGCTGCGATCTCAGTGGACAGGCCTTTTATCACGATATGCGGCTTGTGG
ATGAGGACATGGCTCAGTTGATAGTACAAATTCCACTTCCCTTTAAAAAC
GTAATCGCCTGTAGTCGGGATGGCAACATCATCTTTTGCCCAGCCAATGA
TGGGTCACTGGAATACTATAGGGTGAGCGATGGAGCCCATGCCCATGTCA
AGGGAGGACTTCGCGGCAAGGGAAGCCTTATCCGTAGTAGCGACAATGGA
CGCTGGTTAATTGCAGGCCTCTATGGCGACGAGTTCCAGATATTCTACGT
AGAACACTAAATAGTCGTATTGAATTTTGTTCTCAGTTTTGAAATAATCG
CTTGTATTTGCATGACTGCTTATGTTAATATGTACGGTTTTATCTTCTCT
TAGGTTTGGTATATACACAATTTTATTTTAAAATTTCTCAGATCTCTAAC
AAATACCACATGTAAATATAGACTATGTATTGTAAAAAAAAAAAAAAAAA
A

IP11840.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG13074-RA 1533 CG13074-RA 1..1533 1..1533 7665 100 Plus
CG5284-RB 3396 CG5284-RB 3228..3396 1538..1370 830 99.4 Minus
CG5284-RA 3641 CG5284-RA 3473..3641 1538..1370 830 99.4 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16086435..16087262 828..1 4110 99.8 Minus
chr3L 24539361 chr3L 16086084..16086360 1106..830 1355 99.3 Minus
chr3L 24539361 chr3L 16085537..16085771 1533..1299 1175 100 Minus
chr3L 24539361 chr3L 16085831..16086026 1299..1104 980 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:11:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16096666..16097493 828..1 4140 100 Minus
3L 28110227 3L 16096315..16096592 1106..829 1390 100 Minus
3L 28110227 3L 16095763..16096002 1538..1299 1185 99.6 Minus
3L 28110227 3L 16096062..16096257 1299..1104 980 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16089766..16090593 828..1 4140 100 Minus
3L 28103327 3L 16089415..16089692 1106..829 1390 100 Minus
3L 28103327 3L 16088863..16089102 1538..1299 1185 99.5 Minus
3L 28103327 3L 16089162..16089357 1299..1104 980 100 Minus
Blast to na_te.dros performed on 2019-03-15 12:36:31 has no hits.

IP11840.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:37:11 Download gff for IP11840.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16085537..16085770 1300..1533 100 <- Minus
chr3L 16085831..16086024 1106..1299 100 <- Minus
chr3L 16086085..16086361 829..1105 98 <- Minus
chr3L 16086435..16087262 1..828 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:50:34 Download gff for IP11840.complete
Subject Subject Range Query Range Percent Splice Strand
CG13074-RA 1..1356 5..1360 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:04:21 Download gff for IP11840.complete
Subject Subject Range Query Range Percent Splice Strand
CG13074-RA 1..1356 5..1360 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:47:11 Download gff for IP11840.complete
Subject Subject Range Query Range Percent Splice Strand
CG13074-RA 1..1356 5..1360 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:49:30 Download gff for IP11840.complete
Subject Subject Range Query Range Percent Splice Strand
CG13074-RA 1..1356 5..1360 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:05:50 Download gff for IP11840.complete
Subject Subject Range Query Range Percent Splice Strand
CG13074-RA 1..1356 5..1360 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:51:04 Download gff for IP11840.complete
Subject Subject Range Query Range Percent Splice Strand
CG13074-RA 1..1356 5..1360 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:04:21 Download gff for IP11840.complete
Subject Subject Range Query Range Percent Splice Strand
CG13074-RA 1..1533 1..1533 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:47:11 Download gff for IP11840.complete
Subject Subject Range Query Range Percent Splice Strand
CG13074-RA 1..1533 1..1533 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:49:30 Download gff for IP11840.complete
Subject Subject Range Query Range Percent Splice Strand
CG13074-RA 1..1356 5..1360 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:05:50 Download gff for IP11840.complete
Subject Subject Range Query Range Percent Splice Strand
CG13074-RA 1..1533 1..1533 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:37:11 Download gff for IP11840.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16096316..16096592 829..1105 100 <- Minus
3L 16096666..16097493 1..828 100   Minus
3L 16095768..16096001 1300..1533 100 <- Minus
3L 16096062..16096255 1106..1299 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:37:11 Download gff for IP11840.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16096316..16096592 829..1105 100 <- Minus
3L 16096666..16097493 1..828 100   Minus
3L 16095768..16096001 1300..1533 100 <- Minus
3L 16096062..16096255 1106..1299 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:37:11 Download gff for IP11840.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16096316..16096592 829..1105 100 <- Minus
3L 16096666..16097493 1..828 100   Minus
3L 16095768..16096001 1300..1533 100 <- Minus
3L 16096062..16096255 1106..1299 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:47:11 Download gff for IP11840.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16089162..16089355 1106..1299 100 <- Minus
arm_3L 16089416..16089692 829..1105 100 <- Minus
arm_3L 16088868..16089101 1300..1533 100 <- Minus
arm_3L 16089766..16090593 1..828 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:24:08 Download gff for IP11840.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16089162..16089355 1106..1299 100 <- Minus
3L 16088868..16089101 1300..1533 100 <- Minus
3L 16089416..16089692 829..1105 100 <- Minus
3L 16089766..16090593 1..828 100   Minus

IP11840.hyp Sequence

Translation from 0 to 1359

> IP11840.hyp
KMDVLSHYSSPIVEFPATQPLEKQHALVDNCTGTDPPPPSQDAATGTQEK
LHVATQTEQRVVSSKDVEYDERALAKWLRQICPMVERELMNPTPLMEDLT
MSQCRLEEKLQVYTYQKLIMGGAENSQGLAIWLCVHTNNAPVLVATTVAP
HDDWCEHVDQQLKLFVPQRMSVGNLVIYTEAKTLPLKSCLRSLCTNPFNK
TMFAGSTMDGELFIWLYEQARGSDSSVDIKQLYSVSSTQGAAVALDWPRE
HLLLACFANGSVRQWDLSRQMALDWEYTLPATVSSEPTAMVTLGLDDFVV
GTNDGGVYRCWNTGRQTAAIKQIKLLALRRHRFMVSTLLRTEMEGNLFVL
SCDLSGQAFYHDMRLVDEDMAQLIVQIPLPFKNVIACSRDGNIIFCPAND
GSLEYYRVSDGAHAHVKGGLRGKGSLIRSSDNGRWLIAGLYGDEFQIFYV
EH*

IP11840.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG13074-PA 451 CG13074-PA 1..451 2..452 2384 100 Plus

IP11840.pep Sequence

Translation from 1 to 1359

> IP11840.pep
KMDVLSHYSSPIVEFPATQPLEKQHALVDNCTGTDPPPPSQDAATGTQEK
LHVATQTEQRVVSSKDVEYDERALAKWLRQICPMVERELMNPTPLMEDLT
MSQCRLEEKLQVYTYQKLIMGGAENSQGLAIWLCVHTNNAPVLVATTVAP
HDDWCEHVDQQLKLFVPQRMSVGNLVIYTEAKTLPLKSCLRSLCTNPFNK
TMFAGSTMDGELFIWLYEQARGSDSSVDIKQLYSVSSTQGAAVALDWPRE
HLLLACFANGSVRQWDLSRQMALDWEYTLPATVSSEPTAMVTLGLDDFVV
GTNDGGVYRCWNTGRQTAAIKQIKLLALRRHRFMVSTLLRTEMEGNLFVL
SCDLSGQAFYHDMRLVDEDMAQLIVQIPLPFKNVIACSRDGNIIFCPAND
GSLEYYRVSDGAHAHVKGGLRGKGSLIRSSDNGRWLIAGLYGDEFQIFYV
EH*

IP11840.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:27:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10659-PA 454 GF10659-PA 1..453 2..451 1995 78.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13498-PA 451 GG13498-PA 1..451 2..452 2300 93.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14707-PA 458 GH14707-PA 1..454 2..452 1836 74.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG13074-PA 451 CG13074-PA 1..451 2..452 2384 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12254-PA 455 GI12254-PA 1..450 2..451 1839 73.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25098-PA 454 GL25098-PA 1..454 2..452 2094 84.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:27:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12024-PA 454 GA12024-PA 1..454 2..452 2093 84.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:27:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24447-PA 451 GM24447-PA 1..451 2..452 2357 95.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:27:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17567-PA 451 GD17567-PA 1..451 2..452 2349 95.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11485-PA 458 GJ11485-PA 1..454 2..452 1885 76 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23926-PA 463 GK23926-PA 1..462 2..451 1784 72.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19797-PA 450 GE19797-PA 1..450 2..452 2304 94 Plus
Dyak\GE22810-PA 450 GE22810-PA 1..450 2..452 2303 93.8 Plus