Clone IP11896 Report

Search the DGRC for IP11896

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:118
Well:96
Vector:pOT2
Associated Gene/TranscriptTeh4-RB
Protein status:IP11896.pep: gold
Preliminary Size:1551
Sequenced Size:2147

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15003 2005-01-01 Successful iPCR screen
Teh4 2008-04-29 Release 5.5 accounting
Teh4 2008-08-15 Release 5.9 accounting
Teh4 2008-12-18 5.12 accounting

Clone Sequence Records

IP11896.complete Sequence

2147 bp (2147 high quality bases) assembled on 2005-04-11

GenBank Submission: BT022560

> IP11896.complete
CAGGAACCACTACCAGGTGGATAAATGGGGCGGCGCAAGGACAAACCGCG
GGTGATTCCCGAACAGGATGCGCGCATCTGTCGCGCCATCTGCCTGTGCC
AGCTGACCATGGTGCTGTCCTGCGTGTCCATCGTCTACCTAAGCGTGGCC
ATCTACTCGCCCTCCCTAAAGGCCTTCAAGTCCGGCTTCGAGCTGGATCC
CGTCATGTGCCAGACGGTGGATCGCCAGATGCCCAACAACTGCCCCTGGG
CATCCTGCGGCGAGTGGTGCCTGACCAAGACCAGTGGCTTTTGCCCCCAG
ATCCACTCAATAGTGCGTCGCAACGGCACCGATATCCAGCTGAACAACTG
CACCAGAGTCACCAACACATCGTGCGCCATGATTGACCTGAGTCGGCTGA
ACAAGTTCAATTGCAACAACGGCACCGCCTGCAACAATATCAGAGGCGTC
TTCAACTGCTCCAATGGACACTGCAAGAATATGTCGGAGTTCTTCTTGTG
TCACCACAAAGCCGATGGACTTACGGTCAATTCGCAGAAGGATAACACCA
AGCTGAATGGATTCTTCGAGTGTCACGGGGTGCACTGCACCAAGATCAAG
AAGCCCTTCAGCTGCGATCGCTACTGTTCCAAGATAACAACTACCAATGT
GAACACCCTTATTATGCACGAGGATAATCTTATTGCCGCCGATTGTGAGA
ACGCAGTGGCTTTCAACCAAGCCCGAGGATCCGAGCACGGTGTGCGTATC
GAACCCTTTGAGTTTTGGAAAGAGGATGATGGCAACCTGCTGACCAACTG
CGCCACAGTCACAAGAGAGTCGGACAATCGCATCACTGCCACGGACTGCA
TAAATGGAACCCTCCTGGAACATGACACCTTGCCCGCTCCCTTCATGAAC
TTCACCCAGTTTTGGGCCATCTATGAGAACAGCACCAGGTCGGTGGATCC
CGAGCAGAGGTACCTGCCCAACCAGGCCAACCTGACCATCTACAGCTGGA
AGAAACTGTTCATCAACCTGGAGGGCTGCGTGAACACACTGCGTGGGGAG
TGCAAGGACTTTGTGGCTCGCTATGGCAACGATGGCGATAACAACACCGC
CCAGTCACGCTACCAGTGCTACTATAACAAGGACTCGAATGTGGAGTTTG
TGGTTGCACGCTACGATTTGGACAAGGTTTACAGGGAGCTTCTAGTCTCG
CTGATTGTGCCCATTGTGCTCTTTGTGATCTCATCTATATCGTTATGTAT
CATCACCAAATCCGTCAAGGTGGGTGACGATGCCAAGATGCGCTGTGTTT
GTGCCGGCGATGATTCAGATAATGATGGCCCCTTTGGCCCAGGACTAGCA
AACAAGCAGCAGGATCAGATGTACGATACAGACGACGATGTAGTTGACCT
GGAGCACCAAGCGGTGGATGGTCAAGAACTATCGGACCACGGACTTCCGC
TGGACAACCAAGAGCTAATCGGTAGCACCAAGTCGTTGATACCAATCAGT
CCCGTCGGAGAATCCGGAACTAGTGATCAAATCTTTGACCAGGATCAGGA
GAAAGCAACTACGTGCGATGTTCCCGAGAAACCACTAGTCATACTATAAG
CGGATTAACCGCATCGAAAGAAGGATACAAAACAGCACCAAACTTTAAGG
ACCTGTGCATTGTACAAGGGGAACTGAATTTAAATTCTAATCAGCGCATT
TATACAACGTTTACAACAACTAACAGATTAATGAAACGGATCTTTACTTT
GCTTGGTTGAAAAATGATAATCACACATATATAAATACTGGACATATAGC
TCCCAGATGAACAACGATGGGATGGCCGAGCTTTATATACCCGATCCCCA
CTCTAACCGTTGCAGCAGATGGGCCTTAGACATAGTTGCATTTATATAGA
GTATATAGCATAAACCAACTGACATCTGCTGAACGAAACCAAAGAAGAAA
ACACCAGGACAGACCAAGGATATAGGCATCCGACTCGCCTTAACTCTCGA
CTTTGTAGCTATGCAATATTCAGCGATTTCTTAAACTAGTTTAACCGGTG
GAGCAATAGTACCTACTTATATCTGATATACTTATACTCGAATTATAGCA
AATAAAACACCATTTGGAATTCTCTCTACAAAAAAAAAAAAAAAAAA

IP11896.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
Teh4-RB 2854 Teh4-RB 718..2849 1..2132 10660 100 Plus
Teh4.a 2371 Teh4.a 413..2371 171..2129 9795 100 Plus
Teh4.a 2371 Teh4.a 176..346 1..171 855 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4174245..4175106 2129..1268 4310 100 Minus
chr3L 24539361 chr3L 4175389..4175684 1132..837 1480 100 Minus
chr3L 24539361 chr3L 4176606..4176816 381..171 1055 100 Minus
chr3L 24539361 chr3L 4175968..4176172 670..466 1025 100 Minus
chr3L 24539361 chr3L 4176883..4177053 171..1 855 100 Minus
chr3L 24539361 chr3L 4175738..4175904 836..670 835 100 Minus
chr3L 24539361 chr3L 4175169..4175315 1276..1130 735 100 Minus
chr3L 24539361 chr3L 4176235..4176321 467..381 435 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:11:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4174856..4175720 2132..1268 4325 100 Minus
3L 28110227 3L 4176003..4176298 1132..837 1480 100 Minus
3L 28110227 3L 4177220..4177430 381..171 1055 100 Minus
3L 28110227 3L 4176582..4176786 670..466 1025 100 Minus
3L 28110227 3L 4177497..4177667 171..1 855 100 Minus
3L 28110227 3L 4176352..4176518 836..670 835 100 Minus
3L 28110227 3L 4175783..4175929 1276..1130 735 100 Minus
3L 28110227 3L 4176849..4176935 467..381 435 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4174856..4175720 2132..1268 4325 100 Minus
3L 28103327 3L 4176003..4176298 1132..837 1480 100 Minus
3L 28103327 3L 4177220..4177430 381..171 1055 100 Minus
3L 28103327 3L 4176582..4176786 670..466 1025 100 Minus
3L 28103327 3L 4177497..4177667 171..1 855 100 Minus
3L 28103327 3L 4176352..4176518 836..670 835 100 Minus
3L 28103327 3L 4175783..4175929 1276..1130 735 100 Minus
3L 28103327 3L 4176849..4176935 467..381 435 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:21:34 has no hits.

IP11896.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:22:44 Download gff for IP11896.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4175390..4175684 837..1131 100 <- Minus
chr3L 4175738..4175904 670..836 100 <- Minus
chr3L 4174245..4175104 1270..2129 100 <- Minus
chr3L 4175176..4175313 1132..1269 100 <- Minus
chr3L 4175969..4176171 467..669 100 <- Minus
chr3L 4176236..4176320 382..466 100 <- Minus
chr3L 4176606..4176816 171..381 100 <- Minus
chr3L 4176884..4177053 1..170 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:50:45 Download gff for IP11896.complete
Subject Subject Range Query Range Percent Splice Strand
Teh4-RA 1..319 25..343 100 == Plus
Teh4-RA 320..1551 367..1599 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:04:15 Download gff for IP11896.complete
Subject Subject Range Query Range Percent Splice Strand
Teh4-RB 1..1575 25..1599 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:16:07 Download gff for IP11896.complete
Subject Subject Range Query Range Percent Splice Strand
Teh4-RB 1..1575 25..1599 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:49:23 Download gff for IP11896.complete
Subject Subject Range Query Range Percent Splice Strand
Teh4-RA 1..319 25..343 100 == Plus
Teh4-RA 320..1551 367..1599 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:18:59 Download gff for IP11896.complete
Subject Subject Range Query Range Percent Splice Strand
Teh4-RB 1..1575 25..1599 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:50:51 Download gff for IP11896.complete
Subject Subject Range Query Range Percent Splice Strand
Teh4-RA 1..319 25..343 100 == Plus
Teh4-RA 320..1551 367..1599 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:04:14 Download gff for IP11896.complete
Subject Subject Range Query Range Percent Splice Strand
Teh4-RB 604..2732 1..2129 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:16:07 Download gff for IP11896.complete
Subject Subject Range Query Range Percent Splice Strand
Teh4-RB 604..2732 1..2129 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:49:24 Download gff for IP11896.complete
Subject Subject Range Query Range Percent Splice Strand
Teh4-RA 1..319 25..343 100 == Plus
Teh4-RA 320..1551 367..1599 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:18:59 Download gff for IP11896.complete
Subject Subject Range Query Range Percent Splice Strand
Teh4-RB 604..2732 1..2129 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:22:44 Download gff for IP11896.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4176850..4176934 382..466 100 <- Minus
3L 4177220..4177430 171..381 100 <- Minus
3L 4177498..4177667 1..170 100   Minus
3L 4176004..4176298 837..1131 100 <- Minus
3L 4176352..4176518 670..836 100 <- Minus
3L 4176583..4176785 467..669 100 <- Minus
3L 4174859..4175718 1270..2129 100 <- Minus
3L 4175790..4175927 1132..1269 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:22:44 Download gff for IP11896.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4176850..4176934 382..466 100 <- Minus
3L 4177220..4177430 171..381 100 <- Minus
3L 4177498..4177667 1..170 100   Minus
3L 4176004..4176298 837..1131 100 <- Minus
3L 4176352..4176518 670..836 100 <- Minus
3L 4176583..4176785 467..669 100 <- Minus
3L 4174859..4175718 1270..2129 100 <- Minus
3L 4175790..4175927 1132..1269 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:22:44 Download gff for IP11896.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4176850..4176934 382..466 100 <- Minus
3L 4177220..4177430 171..381 100 <- Minus
3L 4177498..4177667 1..170 100   Minus
3L 4176004..4176298 837..1131 100 <- Minus
3L 4176352..4176518 670..836 100 <- Minus
3L 4176583..4176785 467..669 100 <- Minus
3L 4174859..4175718 1270..2129 100 <- Minus
3L 4175790..4175927 1132..1269 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:16:07 Download gff for IP11896.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4174859..4175718 1270..2129 100 <- Minus
arm_3L 4175790..4175927 1132..1269 100 <- Minus
arm_3L 4176004..4176298 837..1131 100 <- Minus
arm_3L 4176352..4176518 670..836 100 <- Minus
arm_3L 4176583..4176785 467..669 100 <- Minus
arm_3L 4176850..4176934 382..466 100 <- Minus
arm_3L 4177220..4177430 171..381 100 <- Minus
arm_3L 4177498..4177667 1..170 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:24:01 Download gff for IP11896.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4174859..4175718 1270..2129 100 <- Minus
3L 4175790..4175927 1132..1269 100 <- Minus
3L 4176004..4176298 837..1131 100 <- Minus
3L 4176352..4176518 670..836 100 <- Minus
3L 4176583..4176785 467..669 100 <- Minus
3L 4176850..4176934 382..466 100 <- Minus
3L 4177220..4177430 171..381 100 <- Minus
3L 4177498..4177667 1..170 100   Minus

IP11896.hyp Sequence

Translation from 24 to 1598

> IP11896.hyp
MGRRKDKPRVIPEQDARICRAICLCQLTMVLSCVSIVYLSVAIYSPSLKA
FKSGFELDPVMCQTVDRQMPNNCPWASCGEWCLTKTSGFCPQIHSIVRRN
GTDIQLNNCTRVTNTSCAMIDLSRLNKFNCNNGTACNNIRGVFNCSNGHC
KNMSEFFLCHHKADGLTVNSQKDNTKLNGFFECHGVHCTKIKKPFSCDRY
CSKITTTNVNTLIMHEDNLIAADCENAVAFNQARGSEHGVRIEPFEFWKE
DDGNLLTNCATVTRESDNRITATDCINGTLLEHDTLPAPFMNFTQFWAIY
ENSTRSVDPEQRYLPNQANLTIYSWKKLFINLEGCVNTLRGECKDFVARY
GNDGDNNTAQSRYQCYYNKDSNVEFVVARYDLDKVYRELLVSLIVPIVLF
VISSISLCIITKSVKVGDDAKMRCVCAGDDSDNDGPFGPGLANKQQDQMY
DTDDDVVDLEHQAVDGQELSDHGLPLDNQELIGSTKSLIPISPVGESGTS
DQIFDQDQEKATTCDVPEKPLVIL*

IP11896.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
Teh4-PB 524 CG15003-PB 1..524 1..524 2837 100 Plus
Teh3-PA 448 CG18676-PA 1..413 1..423 820 39.5 Plus

IP11896.pep Sequence

Translation from 24 to 1598

> IP11896.pep
MGRRKDKPRVIPEQDARICRAICLCQLTMVLSCVSIVYLSVAIYSPSLKA
FKSGFELDPVMCQTVDRQMPNNCPWASCGEWCLTKTSGFCPQIHSIVRRN
GTDIQLNNCTRVTNTSCAMIDLSRLNKFNCNNGTACNNIRGVFNCSNGHC
KNMSEFFLCHHKADGLTVNSQKDNTKLNGFFECHGVHCTKIKKPFSCDRY
CSKITTTNVNTLIMHEDNLIAADCENAVAFNQARGSEHGVRIEPFEFWKE
DDGNLLTNCATVTRESDNRITATDCINGTLLEHDTLPAPFMNFTQFWAIY
ENSTRSVDPEQRYLPNQANLTIYSWKKLFINLEGCVNTLRGECKDFVARY
GNDGDNNTAQSRYQCYYNKDSNVEFVVARYDLDKVYRELLVSLIVPIVLF
VISSISLCIITKSVKVGDDAKMRCVCAGDDSDNDGPFGPGLANKQQDQMY
DTDDDVVDLEHQAVDGQELSDHGLPLDNQELIGSTKSLIPISPVGESGTS
DQIFDQDQEKATTCDVPEKPLVIL*

IP11896.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23882-PA 524 GF23882-PA 1..524 1..524 2616 91.6 Plus
Dana\GF23880-PA 448 GF23880-PA 1..413 1..423 819 41.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14214-PA 524 GG14214-PA 1..524 1..524 2797 98.7 Plus
Dere\GG14212-PA 448 GG14212-PA 1..413 1..423 798 40.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15551-PA 530 GH15551-PA 1..530 1..524 2370 85.3 Plus
Dgri\GH15549-PA 449 GH15549-PA 1..413 1..423 825 42 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:36
Subject Length Description Subject Range Query Range Score Percent Strand
Teh4-PB 524 CG15003-PB 1..524 1..524 2837 100 Plus
Teh3-PA 448 CG18676-PA 1..413 1..423 820 39.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16826-PA 525 GI16826-PA 1..525 1..524 2400 84.5 Plus
Dmoj\GI16824-PA 448 GI16824-PA 1..413 1..423 818 41.5 Plus
Dmoj\GI21411-PA 75 GI21411-PA 1..63 1..61 188 55.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:28:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12734-PA 129 GL12734-PA 1..125 1..133 633 88 Plus
Dper\GL12732-PA 331 GL12732-PA 1..212 1..206 461 44.1 Plus
Dper\GL20473-PA 77 GL20473-PA 1..77 449..524 309 79.2 Plus
Dper\GL12732-PA 331 GL12732-PA 208..296 334..423 224 47.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13421-PA 524 GA13421-PA 1..524 1..524 2563 89.9 Plus
Dpse\GA15048-PA 448 GA15048-PA 1..413 1..423 819 41.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14006-PA 519 GM14006-PA 1..519 1..524 2743 97.5 Plus
Dsec\GM14004-PA 448 GM14004-PA 1..413 1..423 797 40.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:28:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13287-PA 524 GD13287-PA 1..524 1..524 2793 98.7 Plus
Dsim\GD13284-PA 448 GD13284-PA 1..413 1..423 797 40.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:28:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12574-PA 518 GJ12574-PA 1..518 1..524 2363 86.8 Plus
Dvir\GJ12572-PA 448 GJ12572-PA 1..413 1..423 828 42.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10278-PA 544 GK10278-PA 1..544 1..524 2428 84.2 Plus
Dwil\GK10258-PA 449 GK10258-PA 1..414 1..423 805 41 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20642-PA 524 GE20642-PA 1..524 1..524 2788 98.3 Plus
Dyak\GE20640-PA 448 GE20640-PA 1..413 1..423 798 40.2 Plus