Clone IP11908 Report

Search the DGRC for IP11908

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:119
Well:8
Vector:pOT2
Associated Gene/TranscriptPpat-Dpck-RA
Protein status:IP11908.pep: gold
Preliminary Size:1557
Sequenced Size:1730

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10575 2005-01-01 Successful iPCR screen
CG10575 2008-04-29 Release 5.5 accounting
CG10575 2008-08-15 Release 5.9 accounting
CG10575 2008-12-18 5.12 accounting

Clone Sequence Records

IP11908.complete Sequence

1730 bp (1730 high quality bases) assembled on 2006-01-24

GenBank Submission: BT024307

> IP11908.complete
TAGCCTTCATAATTAGTCGCAATCAATCGAGCAGAATGGCTTCATCCACA
GGTCTCCTGGTGGTGTCCAACATCAAGCACCTTGGCAAATCCCTGCGAGC
CATCGAGAAGTACGTGAATTCACTGTACATCCACCTAAATGTGGCGGGGT
CAACGTCCACGACGTCACCAGTTCCACCGCCTCCGGTTTGGGGTCGTCTA
ATCTCGCAGCTGTACGCCAACAGCAGCAGCTATGTGGGCAAGCAGTTGGA
CCTTCGCGTCCTTGTCTCTCCCCTACGACCAGGTGCCAATGGATCCCTGA
AGTTGCGCCAGCCCGTCGACCTAATCTTCTCGGATGCACATCATCCGGAG
CTGTGCGACAGGCTTCGCGCGGATCTTAACATCAGCAAGCCAACAATCTT
CCTGGATGACTCGGTCATCTCGGATTTAAGTGCCCAGCAGGATGACACCC
AGCCGCCTAAGGTGTATCCCTCGGTTGTCCTGGGCGGAACATTCGATCGC
ATCCATCTGGGACACAAGATATTCCTCACCCAGGCTGTACTGCGCACCTG
CAAGCGTTTGGTTGTGGGCGTAACCACCTCCGCCATGACGAAGGGAAAGA
CGCTGCCGGACTTGATTTTGCCCGTGGAAGAGCGCATCGCCCGGCTAAGG
GAGTTCCTGGTGGACATAGATGATACGCTGCAGTACGAAATTGTGCCCAT
CGATGATCCCTTTGGTCCCACGCAAGTGGATCCTGACCTGGACATGATTG
TGGTCAGTGCGGAGACGTTGCGAGGAGGGCAGAAGGTCAACGAGGTACGC
TCCGCTAAGCAACTGCGCGAGCTGGAGATCTTTGTGATTGACATTGTTGA
AAGCAACGTGCATGATGGCATCCACGAGACCAAGGTCAGCTCGAGTAACA
CACGCATCGATCTGCTGGGAACCCGCTGGAGAAGGCCGGAGCCACGACCA
CAGCTCCCGCCGCGCCCTTACATTATTGGACTCACTGGCGGCATCGCATC
TGGCAAGAGCAAGATGGGCGAGAGATTGGCCAACATGGGCGCCCACGTGA
TCGACTGCGATAAGGTGGCGCACGATGTTTACGAACCTGGTCAGTTGTGC
TACACCCGAATTGTGCAGCACTTCGGACAGGGTATTGTTTCAGACGATGG
TCGCATCGATCGGTCCAAGCTGGGACCCTTGGTGTTTGCCGATCCCAAGC
AGTTGCAAGCACTCAACGGCATTGTCTGGCCGGAACTTATTGCGGAGGTT
AACAGGCGGCTGGATGCACTGCGTTCCCAGGCGGACGTGCCGCGTGTGGT
GGTCCTGGAGGCAGCGGTGCTGCTGCGAGCGGGCTGGGAGACCAATTGCC
ATGAGGTGTGGTCCATGATTGTGCCACCGGATGAGGCTGTGCGGCGGATT
ATTGAGCGCAACAAGTTGAGCGAAGTGGAGGCCCAAAAGCGACTGGCCAG
TCAGGTGCCCAATTCTGAGATCGTGGCCAAGTCGCATGTGATATTCAGTT
CGCAATGGGATCACGAATTCACCCAGAAACAGGCGGAGCGTGCGTGGAAA
ATGCTTACCAAGGAACTGGACTCTTACCAGAGCAGCCTTTAACCCGATGG
ATATTTAGATTATCTTGTTGATCCTTATTTTGTATGATTTTTTATGCATT
TGTTGTATATTGTTTAGTTGTAAGTCCAAAGTTGAAAAGAAATGCTGGGA
CGTCATTGGGGAAAAAAAAAAAAAAAAAAA

IP11908.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
Ppat-Dpck-RA 1933 Ppat-Dpck-RA 180..1895 1..1716 8580 100 Plus
Txl-RA 1274 Txl-RA 1108..1274 1716..1550 835 100 Minus
Txl.b 1121 Txl.b 1020..1121 1716..1615 510 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 5759540..5760657 1711..594 5440 99.1 Minus
chr3L 24539361 chr3L 5760716..5761317 602..1 2950 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:11:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:18:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5767012..5768134 1716..594 5615 100 Minus
3L 28110227 3L 5768193..5768794 602..1 2995 99.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:12:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 5760112..5761234 1716..594 5615 100 Minus
3L 28103327 3L 5761293..5761894 602..1 2995 99.8 Minus
Blast to na_te.dros performed on 2019-03-16 16:18:32 has no hits.

IP11908.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:19:30 Download gff for IP11908.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 5759540..5760656 595..1711 99 <- Minus
chr3L 5760724..5761317 1..594 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:50:48 Download gff for IP11908.complete
Subject Subject Range Query Range Percent Splice Strand
CG10575-RA 1..1557 36..1592 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:35:15 Download gff for IP11908.complete
Subject Subject Range Query Range Percent Splice Strand
Ppat-Dpck-RA 1..1557 36..1592 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:07:32 Download gff for IP11908.complete
Subject Subject Range Query Range Percent Splice Strand
Ppat-Dpck-RA 1..1557 36..1592 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:09:47 Download gff for IP11908.complete
Subject Subject Range Query Range Percent Splice Strand
CG10575-RA 1..1557 36..1592 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:25:03 Download gff for IP11908.complete
Subject Subject Range Query Range Percent Splice Strand
Ppat-Dpck-RA 1..1557 36..1592 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:06:39 Download gff for IP11908.complete
Subject Subject Range Query Range Percent Splice Strand
CG10575-RA 1..1557 36..1592 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:35:15 Download gff for IP11908.complete
Subject Subject Range Query Range Percent Splice Strand
Ppat-Dpck-RA 1..1711 1..1711 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:07:32 Download gff for IP11908.complete
Subject Subject Range Query Range Percent Splice Strand
Ppat-Dpck-RA 1..1711 1..1711 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:09:47 Download gff for IP11908.complete
Subject Subject Range Query Range Percent Splice Strand
CG10575-RA 1..1557 36..1592 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:25:03 Download gff for IP11908.complete
Subject Subject Range Query Range Percent Splice Strand
Ppat-Dpck-RA 1..1711 1..1711 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:19:30 Download gff for IP11908.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5767017..5768133 595..1711 100 <- Minus
3L 5768201..5768794 1..594 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:19:30 Download gff for IP11908.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5767017..5768133 595..1711 100 <- Minus
3L 5768201..5768794 1..594 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:19:30 Download gff for IP11908.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5767017..5768133 595..1711 100 <- Minus
3L 5768201..5768794 1..594 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:07:32 Download gff for IP11908.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5760117..5761233 595..1711 100 <- Minus
arm_3L 5761301..5761894 1..594 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:59:06 Download gff for IP11908.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5760117..5761233 595..1711 100 <- Minus
3L 5761301..5761894 1..594 100   Minus

IP11908.hyp Sequence

Translation from 2 to 1591

> IP11908.hyp
AFIISRNQSSRMASSTGLLVVSNIKHLGKSLRAIEKYVNSLYIHLNVAGS
TSTTSPVPPPPVWGRLISQLYANSSSYVGKQLDLRVLVSPLRPGANGSLK
LRQPVDLIFSDAHHPELCDRLRADLNISKPTIFLDDSVISDLSAQQDDTQ
PPKVYPSVVLGGTFDRIHLGHKIFLTQAVLRTCKRLVVGVTTSAMTKGKT
LPDLILPVEERIARLREFLVDIDDTLQYEIVPIDDPFGPTQVDPDLDMIV
VSAETLRGGQKVNEVRSAKQLRELEIFVIDIVESNVHDGIHETKVSSSNT
RIDLLGTRWRRPEPRPQLPPRPYIIGLTGGIASGKSKMGERLANMGAHVI
DCDKVAHDVYEPGQLCYTRIVQHFGQGIVSDDGRIDRSKLGPLVFADPKQ
LQALNGIVWPELIAEVNRRLDALRSQADVPRVVVLEAAVLLRAGWETNCH
EVWSMIVPPDEAVRRIIERNKLSEVEAQKRLASQVPNSEIVAKSHVIFSS
QWDHEFTQKQAERAWKMLTKELDSYQSSL*

IP11908.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
Ppat-Dpck-PA 518 CG10575-PA 1..518 12..529 2657 100 Plus
Dpck-PA 236 CG1939-PA 2..196 323..518 243 29.9 Plus

IP11908.pep Sequence

Translation from 35 to 1591

> IP11908.pep
MASSTGLLVVSNIKHLGKSLRAIEKYVNSLYIHLNVAGSTSTTSPVPPPP
VWGRLISQLYANSSSYVGKQLDLRVLVSPLRPGANGSLKLRQPVDLIFSD
AHHPELCDRLRADLNISKPTIFLDDSVISDLSAQQDDTQPPKVYPSVVLG
GTFDRIHLGHKIFLTQAVLRTCKRLVVGVTTSAMTKGKTLPDLILPVEER
IARLREFLVDIDDTLQYEIVPIDDPFGPTQVDPDLDMIVVSAETLRGGQK
VNEVRSAKQLRELEIFVIDIVESNVHDGIHETKVSSSNTRIDLLGTRWRR
PEPRPQLPPRPYIIGLTGGIASGKSKMGERLANMGAHVIDCDKVAHDVYE
PGQLCYTRIVQHFGQGIVSDDGRIDRSKLGPLVFADPKQLQALNGIVWPE
LIAEVNRRLDALRSQADVPRVVVLEAAVLLRAGWETNCHEVWSMIVPPDE
AVRRIIERNKLSEVEAQKRLASQVPNSEIVAKSHVIFSSQWDHEFTQKQA
ERAWKMLTKELDSYQSSL*

IP11908.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10448-PA 524 GF10448-PA 2..524 3..518 2300 84.3 Plus
Dana\GF17648-PA 236 GF17648-PA 2..198 312..509 256 31.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14115-PA 520 GG14115-PA 1..520 1..518 2476 93.1 Plus
Dere\GG13797-PA 236 GG13797-PA 2..188 312..503 230 31.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:20:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15947-PA 518 GH15947-PA 2..512 3..515 2091 76.5 Plus
Dgri\GH19000-PA 236 GH19000-PA 2..196 312..507 234 29.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
Ppat-Dpck-PA 518 CG10575-PA 1..518 1..518 2657 100 Plus
Dpck-PA 236 CG1939-PA 2..196 312..507 243 29.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:20:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16599-PA 514 GI16599-PA 2..507 3..512 2110 77.3 Plus
Dmoj\GI24502-PA 236 GI24502-PA 2..196 312..507 233 29.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:20:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16316-PA 517 GL16316-PA 2..515 3..517 2275 81.7 Plus
Dper\GL11944-PA 233 GL11944-PA 2..205 312..516 232 28.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:20:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10406-PA 517 GA10406-PA 2..515 3..517 2278 81.9 Plus
Dpse\GA15141-PA 233 GA15141-PA 2..205 312..516 231 28.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:20:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13900-PA 518 GM13900-PA 1..518 1..518 2566 95.9 Plus
Dsec\GM10930-PA 236 GM10930-PA 2..196 312..507 239 29.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17598-PA 257 GD17598-PA 1..257 1..236 928 80.6 Plus
Dsim\GD13177-PA 171 GD13177-PA 16..171 363..518 782 96.2 Plus
Dsim\GD19908-PA 236 GD19908-PA 2..196 312..507 239 29.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12852-PA 515 GJ12852-PA 2..513 3..517 2044 74.7 Plus
Dvir\GJ24567-PA 236 GJ24567-PA 2..196 312..507 249 31 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16881-PA 524 GK16881-PA 2..516 3..512 2042 77.5 Plus
Dwil\GK14519-PA 238 GK14519-PA 2..207 312..518 241 29.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20540-PA 518 GE20540-PA 1..518 1..518 2512 94.2 Plus
Dyak\GE24899-PA 236 GE24899-PA 2..188 312..503 243 31.1 Plus