Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
IP12209.complete Sequence
1447 bp assembled on 2006-11-21
GenBank Submission: BT030117
> IP12209.complete
CGATATTTTAGATTTATTTGGCATTGTGTGTTGCACGTGAAAAAAAATCG
CTGCCGGACATGGACACAACAATGCCGATGGGCATGGTGCCCAACAGTCT
CAATCCGATCCTCAATCCTCGACCCCTGCCGATACCCGTTACCAAGCCCA
GAACCAAACTCCAGCCGGATGAGCCACACGATGGCGTTTTAGCGTTTAAC
AAGGGAAAAGTACCTCCGCCGGTATCCTCACGTCCTATTCCGCTCCAGCG
TGCAATGTCTGAGGTTCGGGACGCGCTGCGAGCTCAGCCTCAGGCCAGTG
ACATTCGCCTGTTGATCTTCACGGCGGCGGCCAGCAGTGTGGAGCACGAG
AGAACTCTCATTCCGGTGCCGCCACAATTTCAAGCGGCACCAGGCTCCGG
CTGCCAAGTGGATCGATTGCGTCACGCCGTCGCCGATAATTGGCCCTCCT
GTCGCATCATGTTGGACTGCCCCAGTACTGACGAGCAGTATGCCGCTTTG
ATGCCGGACGATGTGGACGCCCTGCATTTGCTGCACTGGATCCTGGTGGC
CACGCCCTCGTCGCCCACTCTGCGCCGCATGTCGGGATTGCATTTGCGGC
GACTTTGCCGCTTTCTGGGCCTGGCACGACCCACCTTGGAGCCCGGCCAT
CTGCTGAGCATCAGTTATGAGCGGAATGTTCAGCGGCTGGGCGATTCGAG
TCCAAGGCCAAGATCCAGTTACGCCTATCTGGGCTTGCCCTTTCAGTACC
TATATCGTTTCCTGGCCACTGGACGTCTGGAGCAACCGCCAGGTGTTGCC
ATTCGTTTGTATGCCCAACCGGAAACAGCCTTGGTTCACTGCGACGAGCT
GAGCTCGCTGCCGCAGCAGCAGCATGTCCAGTCGGAGGAGCAATCGTCCA
GCCAATCCATTGCAGAGAGGGAGCAGTCTGGAAATTCAAGCTCGCTGTGC
TGGCGGAACTCCACGCTCACTGCACCGCAAAGGGCACTGGTCATATGCGA
ACTACCCTCGGAGTTGGACGAATCCATTGCCCATTCGCCGGAGAAGCATT
TTCTCGAGTACTTTGTGCAGGAATCGCTGTCACTGCGACCCTGCTATCTG
CTCCTCTTCGACGAGGCGGTGGCCTCCAACATAATGTTCGTCTGGCCGGG
CAAATGTATTGAGCTGGAGCATCCGGGTCCTTCGATGGTCCAGAGATCGC
GTATCAGGATCATGAATATCGTCCGGAATCTGAGCAACCGGTTGGGAGCA
GTTAGGCGGGCTTTAGCCGCCATTTAGATTTTTATTTTATATATGGCCAA
GGACACTGATCTCGGCCAGGTGCCGTCCGTCGTTCAAAGTCCTGGACATG
CCAACTCCGGTGAACTGGAGCTACTTAATTTTTTTGGAATTTCTCAAACA
ATTGTTAATAAATATTTGGCAACTTATACTAAAAAAAAAAAAAAAAA
IP12209.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:11:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15337-RA | 1506 | CG15337-RA | 76..1506 | 1..1431 | 7155 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:01:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 8052168..8053400 | 200..1430 | 5980 | 99.2 | Plus |
chrX | 22417052 | chrX | 8051900..8052098 | 1..199 | 995 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:13:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:01:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8160322..8161554 | 200..1432 | 6165 | 100 | Plus |
X | 23542271 | X | 8160054..8160252 | 1..199 | 995 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:05:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 8168420..8169652 | 200..1432 | 6165 | 100 | Plus |
X | 23527363 | X | 8168152..8168350 | 1..199 | 995 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-16 06:01:12 has no hits.
IP12209.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:02:25 Download gff for
IP12209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 8051900..8052098 | 1..199 | 100 | -> | Plus |
chrX | 8052168..8053400 | 200..1430 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:51:27 Download gff for
IP12209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15337-RA | 1..1218 | 60..1277 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:18:35 Download gff for
IP12209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15337-RA | 1..1218 | 60..1277 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:14:27 Download gff for
IP12209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15337-RA | 1..1218 | 60..1277 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:32:17 Download gff for
IP12209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15337-RA | 1..1218 | 60..1277 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:12:58 Download gff for
IP12209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15337-RA | 1..1218 | 60..1277 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:46:49 Download gff for
IP12209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15337-RA | 1..1371 | 60..1430 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:18:34 Download gff for
IP12209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15337-RA | 1..1371 | 60..1430 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:14:27 Download gff for
IP12209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15337-RA | 1..1430 | 1..1430 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:32:18 Download gff for
IP12209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15337-RA | 1..1371 | 60..1430 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:12:58 Download gff for
IP12209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15337-RA | 1..1430 | 1..1430 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:02:25 Download gff for
IP12209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8160054..8160252 | 1..199 | 100 | -> | Plus |
X | 8160322..8161552 | 200..1430 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:02:25 Download gff for
IP12209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8160054..8160252 | 1..199 | 100 | -> | Plus |
X | 8160322..8161552 | 200..1430 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:02:25 Download gff for
IP12209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8160054..8160252 | 1..199 | 100 | -> | Plus |
X | 8160322..8161552 | 200..1430 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:14:27 Download gff for
IP12209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8054087..8054285 | 1..199 | 100 | -> | Plus |
arm_X | 8054355..8055585 | 200..1430 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:48:12 Download gff for
IP12209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8168152..8168350 | 1..199 | 100 | -> | Plus |
X | 8168420..8169650 | 200..1430 | 100 | | Plus |
IP12209.hyp Sequence
Translation from 59 to 1276
> IP12209.hyp
MDTTMPMGMVPNSLNPILNPRPLPIPVTKPRTKLQPDEPHDGVLAFNKGK
VPPPVSSRPIPLQRAMSEVRDALRAQPQASDIRLLIFTAAASSVEHERTL
IPVPPQFQAAPGSGCQVDRLRHAVADNWPSCRIMLDCPSTDEQYAALMPD
DVDALHLLHWILVATPSSPTLRRMSGLHLRRLCRFLGLARPTLEPGHLLS
ISYERNVQRLGDSSPRPRSSYAYLGLPFQYLYRFLATGRLEQPPGVAIRL
YAQPETALVHCDELSSLPQQQHVQSEEQSSSQSIAEREQSGNSSSLCWRN
STLTAPQRALVICELPSELDESIAHSPEKHFLEYFVQESLSLRPCYLLLF
DEAVASNIMFVWPGKCIELEHPGPSMVQRSRIRIMNIVRNLSNRLGAVRR
ALAAI*
IP12209.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:46:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15337-PA | 405 | CG15337-PA | 1..405 | 1..405 | 2110 | 100 | Plus |
IP12209.pep Sequence
Translation from 59 to 1276
> IP12209.pep
MDTTMPMGMVPNSLNPILNPRPLPIPVTKPRTKLQPDEPHDGVLAFNKGK
VPPPVSSRPIPLQRAMSEVRDALRAQPQASDIRLLIFTAAASSVEHERTL
IPVPPQFQAAPGSGCQVDRLRHAVADNWPSCRIMLDCPSTDEQYAALMPD
DVDALHLLHWILVATPSSPTLRRMSGLHLRRLCRFLGLARPTLEPGHLLS
ISYERNVQRLGDSSPRPRSSYAYLGLPFQYLYRFLATGRLEQPPGVAIRL
YAQPETALVHCDELSSLPQQQHVQSEEQSSSQSIAEREQSGNSSSLCWRN
STLTAPQRALVICELPSELDESIAHSPEKHFLEYFVQESLSLRPCYLLLF
DEAVASNIMFVWPGKCIELEHPGPSMVQRSRIRIMNIVRNLSNRLGAVRR
ALAAI*
IP12209.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:14:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF21313-PA | 481 | GF21313-PA | 86..481 | 52..405 | 1067 | 55.5 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:14:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG19303-PA | 385 | GG19303-PA | 1..385 | 1..405 | 1532 | 74.4 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15337-PA | 405 | CG15337-PA | 1..405 | 1..405 | 2110 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:14:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI14371-PA | 380 | GI14371-PA | 73..319 | 60..350 | 277 | 30.6 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:14:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL20366-PA | 382 | GL20366-PA | 46..335 | 62..369 | 614 | 44.3 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:14:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA13656-PA | 387 | GA13656-PA | 31..340 | 44..369 | 629 | 43.7 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:14:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM11234-PA | 403 | GM11234-PA | 1..403 | 1..405 | 1947 | 94.8 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:14:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD24768-PA | 406 | GD24768-PA | 1..406 | 1..405 | 1970 | 95.1 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:14:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE15769-PA | 404 | GE15769-PA | 1..404 | 1..405 | 1666 | 79.1 | Plus |