Clone IP12210 Report

Search the DGRC for IP12210

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:122
Well:10
Vector:pOT2
Associated Gene/TranscriptCp7Fb-RB
Protein status:IP12210.pep: gold
Preliminary Size:1503
Sequenced Size:1425

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Cp7Fb 2008-04-29 Release 5.5 accounting
Cp7Fb 2008-04-29 Picked prior to 5.5
Cp7Fb 2008-08-15 Release 5.9 accounting
Cp7Fb 2008-12-18 5.12 accounting

Clone Sequence Records

IP12210.complete Sequence

1425 bp (1425 high quality bases) assembled on 2006-09-20

GenBank Submission: BT029090

> IP12210.complete
CCAATGAAAATAGAATGCAAGAATTTTACTTTGCATTTAAATCTATAAAT
AAACCATTAAGTGTACTTTAAATGTATTAAATGTATCATTAAGTGTTTTA
AATATTCCCACGACATATTATTTGACTTATTTGTTTATGAATTGCATTAT
TACAGTTGAGCATATCTAATAGAGATTTTACACTGTTTAATAGTTTGTAA
TACAGTGTGTTTATTTTTGAATGAATGCCATGTAATGCGATATGTTGCAC
AAGAAAATAATTGATTATATATAAACAAACATTTGTATAAGCTGGCATAA
TTCAAAATGTTTTTCACAATACGTTTAAAACTAAAATGTTTACTTTCCGT
TCGCATTGGCTAGGTTCCACTGTGGACAATTCTGCGTTTGGCGTTTGGAT
CTCAAGCCATCGAGACACTCGACACTGAAGAAAGCGGCGAACGTCGGGAA
CATGACTTTTGACGGAAAACATGACCCGCGAACTATTTGAAAAGGTCAGC
GAAAACAAAAACAAACAGAGTGGCCAAGCCGGCGTCTCTGGGGAAGAAGA
CCTTGCCCAAAGTCAAGACCATTGGGGTCCGCGTGCTGGCCGAGATGATA
TAAAGAATGTGACAATACATTCTGCGGCTAGTAGCCAGCAAGGCAGACAA
CCGAGAAGATCTAACCGAGATGCGATACTCCATGGCAATGATCCCGATTC
TGGGCCTGCTGCTCGTAGCACTGATCCACGCCGCTCCCGTTGAGGTCGTC
TACACGGGCGAAAGTTGCGCCTGTCCCACCCAACTGGGTTACCAGCTAAA
TGTGCCCAATACCCCAAAGCCAAAGAAGTATGTCGGTGGCGAGTACGGCT
ATCGGGTGGAGAAGCCCGTCCAGACGAAAGCCAAGATTACCTACAGCTTT
GACTTCACTGTGGAGCAGCCGAGGACACCGGCGCCGCCCAAGAACAATCC
CGCCAAGCTGTATGCCAAGGTGGACCGGATCACAGTCAACAAAGCGGATT
GCCAGGCCAAGAACAAGTCAACATGCGGCTGCTCGAGTTGCTCCGGCCAA
AAACCCAGCTACGGCGAAGACGCGGGCTACGGCTACTGAAGAGAGATCTT
ACATATAAACCAACAATATCAAAACCGAAACCCAAACCAAAACTCCAAAC
CGAATGCAACCCAACCCAACCCAACCCATCGATCTGCTGAGCTCGGCTTA
AAATCCAGCCGAAAGTAGGCCAGTGGAGCACTCCGCTTTCGGGTCTCCAT
TCGCTTGTATATATGTACATATATATATATATATATGTATCTACGTGTAC
TATAGAAGTTATGAATCCAACCTCCGATTTCTGTTTACGTTTTCCGCTTT
TGTCGGCACTTCAAGAAGTTGCCCCAATTAACTGGTTAATAAAGTGTTTG
CCTGATTAAAAAAAAAAAAAAAAAA

IP12210.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:15:33
Subject Length Description Subject Range Query Range Score Percent Strand
Cp7Fb-RA 2725 Cp7Fb-RA 1..1063 1..1063 5300 99.9 Plus
Cp7Fb-RA 2725 Cp7Fb-RA 2374..2725 1056..1407 1760 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8364973..8365969 1..997 4985 100 Plus
chrX 22417052 chrX 8367488..8367839 1056..1407 1760 100 Plus
chrX 22417052 chrX 8366111..8366177 997..1063 320 98.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:13:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8473205..8474201 1..997 4985 100 Plus
X 23542271 X 8475720..8476075 1056..1411 1780 100 Plus
X 23542271 X 8474343..8474409 997..1063 320 98.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:09:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8481303..8482299 1..997 4985 100 Plus
X 23527363 X 8483818..8484173 1056..1411 1780 100 Plus
X 23527363 X 8482441..8482507 997..1063 320 98.5 Plus
Blast to na_te.dros performed 2019-03-15 12:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 6855..6955 1..101 137 62.5 Plus

IP12210.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:50:55 Download gff for IP12210.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8364973..8365969 1..997 100 -> Plus
chrX 8366112..8366172 998..1058 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:51:28 Download gff for IP12210.complete
Subject Subject Range Query Range Percent Splice Strand
Cp7Fb-RA 1..394 670..1063 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:26:33 Download gff for IP12210.complete
Subject Subject Range Query Range Percent Splice Strand
Cp7Fb-RB 1..420 670..1089 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:50:37 Download gff for IP12210.complete
Subject Subject Range Query Range Percent Splice Strand
Cp7Fb-RB 1..420 670..1089 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:46:38 Download gff for IP12210.complete
Subject Subject Range Query Range Percent Splice Strand
Cp7Fb-RA 1..394 670..1063 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:11:16 Download gff for IP12210.complete
Subject Subject Range Query Range Percent Splice Strand
Cp7Fb-RB 1..420 670..1089 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:55:04 Download gff for IP12210.complete
Subject Subject Range Query Range Percent Splice Strand
Cp7Fb-RA 1..1058 1..1058 100 -> Plus
Cp7Fb-RA 2377..2725 1059..1407 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:26:33 Download gff for IP12210.complete
Subject Subject Range Query Range Percent Splice Strand
Cp7Fb-RB 1..1407 1..1407 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:50:37 Download gff for IP12210.complete
Subject Subject Range Query Range Percent Splice Strand
Cp7Fb-RB 1..775 633..1407 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:46:38 Download gff for IP12210.complete
Subject Subject Range Query Range Percent Splice Strand
Cp7Fb-RA 1..394 670..1063 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:11:16 Download gff for IP12210.complete
Subject Subject Range Query Range Percent Splice Strand
Cp7Fb-RB 1..775 633..1407 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:50:55 Download gff for IP12210.complete
Subject Subject Range Query Range Percent Splice Strand
X 8473205..8474201 1..997 100 -> Plus
X 8474344..8474404 998..1058 100 -> Plus
X 8475723..8476071 1059..1407 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:50:55 Download gff for IP12210.complete
Subject Subject Range Query Range Percent Splice Strand
X 8473205..8474201 1..997 100 -> Plus
X 8474344..8474404 998..1058 100 -> Plus
X 8475723..8476071 1059..1407 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:50:55 Download gff for IP12210.complete
Subject Subject Range Query Range Percent Splice Strand
X 8473205..8474201 1..997 100 -> Plus
X 8474344..8474404 998..1058 100 -> Plus
X 8475723..8476071 1059..1407 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:50:37 Download gff for IP12210.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8367238..8368234 1..997 100 -> Plus
arm_X 8368377..8368437 998..1058 100 -> Plus
arm_X 8369756..8370104 1059..1407 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:53:21 Download gff for IP12210.complete
Subject Subject Range Query Range Percent Splice Strand
X 8481303..8482299 1..997 100 -> Plus
X 8482442..8482502 998..1058 100 -> Plus
X 8483821..8484169 1059..1407 100   Plus

IP12210.hyp Sequence

Translation from 669 to 1088

> IP12210.hyp
MRYSMAMIPILGLLLVALIHAAPVEVVYTGESCACPTQLGYQLNVPNTPK
PKKYVGGEYGYRVEKPVQTKAKITYSFDFTVEQPRTPAPPKNNPAKLYAK
VDRITVNKADCQAKNKSTCGCSSCSGQKPSYGEDAGYGY*

IP12210.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
Cp7Fb-PB 139 CG15350-PB 1..139 1..139 749 100 Plus
Cp7Fb-PA 500 CG15350-PA 1..131 1..131 697 99.2 Plus

IP12210.pep Sequence

Translation from 669 to 1088

> IP12210.pep
MRYSMAMIPILGLLLVALIHAAPVEVVYTGESCACPTQLGYQLNVPNTPK
PKKYVGGEYGYRVEKPVQTKAKITYSFDFTVEQPRTPAPPKNNPAKLYAK
VDRITVNKADCQAKNKSTCGCSSCSGQKPSYGEDAGYGY*

IP12210.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22368-PA 534 GF22368-PA 28..153 7..131 553 81.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18253-PA 500 GG18253-PA 1..131 1..131 663 93.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12238-PA 534 GH12238-PA 27..136 23..131 456 77.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
Cp7Fb-PB 139 CG15350-PB 1..139 1..139 749 100 Plus
Cp7Fb-PA 500 CG15350-PA 1..131 1..131 697 99.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15772-PA 534 GI15772-PA 1..134 1..131 438 69.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20314-PA 368 GL20314-PA 19..107 21..109 329 73 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:35:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13662-PA 432 GA13662-PA 18..113 20..115 367 81.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:35:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21605-PA 500 GM21605-PA 1..131 1..131 691 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16901-PA 500 GD16901-PA 1..131 1..131 691 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18628-PA 547 GJ18628-PA 30..139 23..131 424 80 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:35:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19990-PA 511 GK19990-PA 25..117 22..114 318 77.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:35:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15784-PA 499 GE15784-PA 1..131 1..131 655 92.4 Plus