Clone IP12247 Report

Search the DGRC for IP12247

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:122
Well:47
Vector:pOT2
Associated Gene/TranscriptCG18258-RA
Protein status:IP12247.pep: gold
Preliminary Size:1407
Sequenced Size:1509

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18258 2005-01-01 Successful iPCR screen
CG18258 2008-04-29 Release 5.5 accounting
CG18258 2008-08-15 Release 5.9 accounting
CG18258 2008-12-18 5.12 accounting

Clone Sequence Records

IP12247.complete Sequence

1509 bp (1509 high quality bases) assembled on 2006-03-22

GenBank Submission: BT024983

> IP12247.complete
ATGTCTTCTTCGATTGCAGTGGTGCTGGTGGTGGTGCTGATTGGGATTTC
TGAGTCCATTAAGACTGATTCTCTGATGATGACCTCTTCTTTAACTCCAG
AGATTTCGAAGTCTGATAAATTAAAACTAATCGTGTCGCAAAATGCGGAA
AGTTCAAAGGATACAGATGCCATCGAAACTGACATCTCAAACGAACATGA
TCCACGTGATGCCTTAAAGGATTCTAGTTCGCCGGATGCGGATGTTTTAA
GGAATAAGACAACTGAAGGCTTAATTTCTTTGAATAATAAAGCCGAGAAC
ACAATGACAGGATTGGATGATTCTGAAAGTCTTAAGTTGGCACGGCCAGC
GAGTTCATATCAGGAAGCGCTGCTCAATCGCCTACAGGATCAGTTGAATC
AGTTCGTTGTTGGCTTGCCCCTGGACTTGGGCTTCTCCACCTTGAACTAT
ATATGCAGCACCATTGTGGACCTCGGAGTGGTGAGGTCCAAGCTAATACC
GGATATGTCGCGTATGAGTTTTCTGCTTCGATCGAGTGATGATTGTCAGA
ATACCAGTATTCCACTGACGCAGGCGGAGCAGTTATGGAACACTACCGGA
TTTTATCAGGATCGACCCACTGTCTTGTTCATCACCGGCTGGACAACGAG
CATTAACAATTCCAATAGTGGTCCCGTGGCAAAAGCTTATCTTTGTCGCA
ATGATACCAATGTTTTGATTCTAGATGCTGCGAACTTCATAGACACCCTG
TATACATGGTCTGCCCTGAACACAGAGGTTATTGGAGATTATCTGGCCAA
GGCGCTCCTCCGGCTGAATACGAGCTATGTGACCAAACAGTTCCATTTGG
TGGGTCACAGCTTGGGCGCCCAAATAGCCGGTTCAGCGGGCAGAAACTAT
CGACGATTGTCTGGGGGACAAATCCTGAAGAGAATCACCGGATTGGATCC
GGCTAACCCATGTTTTTACGATGGCAATGAGCTGGAGGGTCTGCGGAGTG
GCGATGCCCGATTTGTAGACATTATCCACACCAATCCCGGCATGTTTGGC
ACATCGAAGCGGGCCGGCGATGCTGACTTCTTTGTCCAGGGACGGATTCC
CTTCAAGCCGGGATGCGAGAGCCTTGACCCCATTAGCTGTTCGCATCAGA
GAGCCGTGGATTACTGGACGGAAACGGTGTATCCGTCGAATGGGAATGAC
TTCCTGGCCAAGCGATGTAAGCGCTATTCGGAACTCCTTCTCGGAAACTA
TTGCAAGAACACGAATACCGTGATGGGCTATGCCGCCAAGGCCACGGATC
TGGGCCTGTTCTACGTGGGCGCCAATCCAGAGGAGCCCTATGGCCAAAAT
GCCAATCTGCAGAGCTACACAAACTCCGACACAAAATGTGGATCTTGTGC
ATCATGAATATTCGTACATGTATTCTTATAGTAGTATTATTAAAAACGAA
ACGCAATAAAAAACTGTTATCCGCAGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA

IP12247.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG18258-RA 1508 CG18258-RA 28..1507 1..1480 7385 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 17102672..17103435 713..1476 3805 99.9 Plus
chrX 22417052 chrX 17101786..17102502 1..717 3585 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:13:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:06:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17213214..17213981 713..1480 3810 99.7 Plus
X 23542271 X 17212328..17213044 1..717 3585 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 17221312..17222079 713..1480 3810 99.7 Plus
X 23527363 X 17220426..17221142 1..717 3585 100 Plus
Blast to na_te.dros performed on 2019-03-16 17:06:00 has no hits.

IP12247.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:06:56 Download gff for IP12247.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 17101786..17102502 1..717 100 -> Plus
chrX 17102677..17103435 718..1476 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:51:33 Download gff for IP12247.complete
Subject Subject Range Query Range Percent Splice Strand
CG18258-RA 1..1407 1..1407 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:59:37 Download gff for IP12247.complete
Subject Subject Range Query Range Percent Splice Strand
CG18258-RA 1..1407 1..1407 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:51:38 Download gff for IP12247.complete
Subject Subject Range Query Range Percent Splice Strand
CG18258-RA 1..1407 1..1407 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:40:12 Download gff for IP12247.complete
Subject Subject Range Query Range Percent Splice Strand
CG18258-RA 1..1407 1..1407 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:50:54 Download gff for IP12247.complete
Subject Subject Range Query Range Percent Splice Strand
CG18258-RA 1..1407 1..1407 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:41:33 Download gff for IP12247.complete
Subject Subject Range Query Range Percent Splice Strand
CG18258-RA 1..1476 1..1476 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:59:37 Download gff for IP12247.complete
Subject Subject Range Query Range Percent Splice Strand
CG18258-RA 1..1476 1..1476 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:51:38 Download gff for IP12247.complete
Subject Subject Range Query Range Percent Splice Strand
CG18258-RA 22..1497 1..1476 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:40:12 Download gff for IP12247.complete
Subject Subject Range Query Range Percent Splice Strand
CG18258-RA 1..1476 1..1476 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:50:54 Download gff for IP12247.complete
Subject Subject Range Query Range Percent Splice Strand
CG18258-RA 22..1497 1..1476 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:06:56 Download gff for IP12247.complete
Subject Subject Range Query Range Percent Splice Strand
X 17212328..17213044 1..717 100 -> Plus
X 17213219..17213977 718..1476 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:06:56 Download gff for IP12247.complete
Subject Subject Range Query Range Percent Splice Strand
X 17212328..17213044 1..717 100 -> Plus
X 17213219..17213977 718..1476 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:06:56 Download gff for IP12247.complete
Subject Subject Range Query Range Percent Splice Strand
X 17212328..17213044 1..717 100 -> Plus
X 17213219..17213977 718..1476 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:51:38 Download gff for IP12247.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17106361..17107077 1..717 100 -> Plus
arm_X 17107252..17108010 718..1476 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:19:05 Download gff for IP12247.complete
Subject Subject Range Query Range Percent Splice Strand
X 17220426..17221142 1..717 100 -> Plus
X 17221317..17222075 718..1476 100   Plus

IP12247.pep Sequence

Translation from 0 to 1406

> IP12247.pep
MSSSIAVVLVVVLIGISESIKTDSLMMTSSLTPEISKSDKLKLIVSQNAE
SSKDTDAIETDISNEHDPRDALKDSSSPDADVLRNKTTEGLISLNNKAEN
TMTGLDDSESLKLARPASSYQEALLNRLQDQLNQFVVGLPLDLGFSTLNY
ICSTIVDLGVVRSKLIPDMSRMSFLLRSSDDCQNTSIPLTQAEQLWNTTG
FYQDRPTVLFITGWTTSINNSNSGPVAKAYLCRNDTNVLILDAANFIDTL
YTWSALNTEVIGDYLAKALLRLNTSYVTKQFHLVGHSLGAQIAGSAGRNY
RRLSGGQILKRITGLDPANPCFYDGNELEGLRSGDARFVDIIHTNPGMFG
TSKRAGDADFFVQGRIPFKPGCESLDPISCSHQRAVDYWTETVYPSNGND
FLAKRCKRYSELLLGNYCKNTNTVMGYAAKATDLGLFYVGANPEEPYGQN
ANLQSYTNSDTKCGSCAS*

IP12247.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22326-PA 404 GF22326-PA 13..402 75..466 1373 64.1 Plus
Dana\GF22327-PA 420 GF22327-PA 63..394 128..466 710 41.8 Plus
Dana\GF10332-PA 333 GF10332-PA 10..327 140..466 698 41.2 Plus
Dana\GF15222-PA 341 GF15222-PA 61..329 207..468 353 33.2 Plus
Dana\GF11422-PA 349 GF11422-PA 32..286 206..451 344 34.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19105-PA 451 GG19105-PA 1..450 1..466 1791 76.6 Plus
Dere\GG19106-PA 411 GG19106-PA 56..387 128..466 695 41.8 Plus
Dere\GG16105-PA 376 GG16105-PA 54..360 140..451 683 40.6 Plus
Dere\GG10541-PA 340 GG10541-PA 21..329 168..468 360 31.7 Plus
Dere\GG20643-PA 394 GG20643-PA 83..336 206..451 331 34.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:51:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12060-PA 391 GH12060-PA 67..378 135..452 692 42.9 Plus
Dgri\GH14732-PA 333 GH14732-PA 6..315 138..452 690 41.5 Plus
Dgri\GH10838-PA 341 GH10838-PA 14..330 159..465 354 32.3 Plus
Dgri\GH22648-PA 371 GH22648-PA 57..317 199..450 346 34 Plus
Dgri\Yp2-PA 440 GH12905-PA 199..414 237..455 294 34.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG18258-PA 468 CG18258-PA 1..468 1..468 2420 100 Plus
CG5162-PB 411 CG5162-PB 62..387 134..466 678 41 Plus
CG5162-PA 411 CG5162-PA 62..387 134..466 678 41 Plus
CG5665-PB 376 CG5665-PB 54..360 140..451 654 40.3 Plus
CG5665-PC 395 CG5665-PC 54..379 140..451 625 38.3 Plus
CG17292-PD 340 CG17292-PD 21..329 168..468 348 31.4 Plus
CG17292-PC 340 CG17292-PC 21..329 168..468 348 31.4 Plus
CG17292-PB 340 CG17292-PB 21..329 168..468 348 31.4 Plus
CG17292-PA 340 CG17292-PA 21..329 168..468 348 31.4 Plus
CG6472-PB 389 CG6472-PB 38..335 166..455 329 30.8 Plus
CG13282-PB 484 CG13282-PB 105..351 198..447 288 32.4 Plus
CG13282-PA 484 CG13282-PA 105..351 198..447 288 32.4 Plus
CG6271-PA 341 CG6271-PA 94..338 199..448 287 33.3 Plus
CG7367-PD 358 CG7367-PD 82..340 181..439 281 32.7 Plus
CG7367-PB 358 CG7367-PB 82..340 181..439 281 32.7 Plus
CG7367-PC 389 CG7367-PC 113..371 181..439 281 32.7 Plus
CG6277-PA 341 CG6277-PA 71..338 174..448 280 31.8 Plus
CG10357-PC 321 CG10357-PC 57..318 209..452 277 30.2 Plus
CG17192-PA 337 CG17192-PA 91..335 201..449 267 32.3 Plus
CG6283-PA 339 CG6283-PA 93..337 201..449 267 32 Plus
Yp1-PB 439 CG2985-PB 203..421 237..458 257 30.6 Plus
Yp1-PA 439 CG2985-PA 203..421 237..458 257 30.6 Plus
Yp2-PB 442 CG2979-PB 204..421 237..457 257 33 Plus
Yp2-PA 442 CG2979-PA 204..421 237..457 257 33 Plus
CG34447-PA 389 CG34447-PA 42..326 172..461 255 29.2 Plus
CG34447-PB 389 CG34447-PB 42..326 172..461 255 29.2 Plus
CG34448-PA 344 CG34448-PA 22..322 149..449 254 29.2 Plus
CG6295-PA 338 CG6295-PA 92..335 201..448 252 32.1 Plus
CG18641-PC 369 CG18641-PC 97..352 199..449 239 29.5 Plus
CG10116-PA 289 CG10116-PA 32..288 183..456 236 28.7 Plus
CG6675-PC 386 CG6675-PC 135..381 193..447 233 29.7 Plus
CG6675-PB 390 CG6675-PB 139..385 193..447 233 29.7 Plus
CG17191-PA 337 CG17191-PA 91..335 201..449 231 30.9 Plus
CG6296-PA 676 CG6296-PA 99..342 201..448 230 30 Plus
CG1986-PB 404 CG1986-PB 79..345 194..447 229 28.7 Plus
CG1986-PA 404 CG1986-PA 79..345 194..447 229 28.7 Plus
CG14034-PC 338 CG14034-PC 9..316 143..455 227 25.2 Plus
CG14034-PB 338 CG14034-PB 9..316 143..455 227 25.2 Plus
Yp3-PB 420 CG11129-PB 194..404 237..451 224 31.1 Plus
Yp3-PA 420 CG11129-PA 194..404 237..451 224 31.1 Plus
CG4582-PA 432 CG4582-PA 164..420 206..452 206 28.7 Plus
CG4267-PB 374 CG4267-PB 36..359 146..455 200 28.2 Plus
CG4267-PA 374 CG4267-PA 36..359 146..455 200 28.2 Plus
CG6847-PB 1000 CG6847-PB 237..463 251..447 190 29.5 Plus
CG6847-PA 1000 CG6847-PA 237..463 251..447 190 29.5 Plus
CG5966-PB 436 CG5966-PB 28..219 226..393 189 32.1 Plus
CG5966-PA 540 CG5966-PA 132..323 226..393 189 32.1 Plus
CG6431-PB 346 CG6431-PB 84..279 200..397 155 30.6 Plus
CG6431-PC 351 CG6431-PC 89..284 200..397 155 30.6 Plus
CG10163-PA 378 CG10163-PA 62..353 152..447 154 23.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:51:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15547-PA 383 GI15547-PA 34..381 123..468 1178 61.3 Plus
Dmoj\GI15548-PA 389 GI15548-PA 62..387 135..466 703 41.3 Plus
Dmoj\GI13386-PA 367 GI13386-PA 17..360 119..468 702 40.3 Plus
Dmoj\GI13385-PA 239 GI13385-PA 15..234 240..463 471 39.6 Plus
Dmoj\GI17353-PA 344 GI17353-PA 21..330 168..465 349 31.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19878-PA 371 GL19878-PA 31..371 123..466 1257 66.6 Plus
Dper\GL19877-PA 357 GL19877-PA 35..352 131..455 1030 59.6 Plus
Dper\GL19879-PA 419 GL19879-PA 71..402 128..466 732 43.4 Plus
Dper\GL25135-PA 359 GL25135-PA 6..344 114..452 689 39 Plus
Dper\GL19227-PA 342 GL19227-PA 59..311 205..449 334 33.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14858-PA 371 GA14858-PA 31..371 123..466 1251 66.6 Plus
Dpse\GA28231-PA 371 GA28231-PA 43..371 139..466 1134 63.3 Plus
Dpse\GA18700-PA 419 GA18700-PA 71..402 128..466 732 43.4 Plus
Dpse\GA19044-PA 359 GA19044-PA 6..344 114..452 682 38.7 Plus
Dpse\GA14444-PA 342 GA14444-PA 59..311 205..449 334 33.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13496-PA 461 GM13496-PA 1..461 1..467 2262 93.4 Plus
Dsec\GM22281-PA 376 GM22281-PA 54..361 140..452 677 39.8 Plus
Dsec\GM13497-PA 433 GM13497-PA 56..317 128..394 617 44.4 Plus
Dsec\GM16918-PA 340 GM16918-PA 21..329 168..468 365 31.7 Plus
Dsec\GM21737-PA 394 GM21737-PA 83..340 206..455 341 33.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17337-PA 461 GD17337-PA 1..461 1..467 2291 94.2 Plus
Dsim\GD14879-PA 376 GD14879-PA 54..361 140..452 677 39.8 Plus
Dsim\GD17338-PA 249 GD17338-PA 1..247 195..445 564 44.8 Plus
Dsim\GD23531-PA 340 GD23531-PA 21..329 168..468 358 31.4 Plus
Dsim\GD11231-PA 394 GD11231-PA 83..340 206..455 345 34 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:51:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14890-PA 380 GJ14890-PA 47..376 135..466 1171 63.7 Plus
Dvir\GJ11510-PA 385 GJ11510-PA 29..377 118..468 719 40.4 Plus
Dvir\GJ14891-PA 392 GJ14891-PA 65..390 135..467 707 40.9 Plus
Dvir\GJ11509-PA 289 GJ11509-PA 4..268 182..450 603 42.2 Plus
Dvir\GJ21013-PA 371 GJ21013-PA 78..331 206..451 343 34.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18858-PA 368 GK18858-PA 20..361 122..466 1304 67.8 Plus
Dwil\GK16955-PA 292 GK16955-PA 4..290 182..468 647 42.8 Plus
Dwil\GK25805-PA 392 GK25805-PA 65..391 135..468 630 39.7 Plus
Dwil\GK22029-PA 364 GK22029-PA 52..316 196..450 349 33.5 Plus
Dwil\GK24161-PA 341 GK24161-PA 21..330 168..468 336 31 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17651-PA 447 GE17651-PA 16..447 15..467 1836 76.2 Plus
Dyak\GE17652-PA 412 GE17652-PA 58..390 128..467 682 40.2 Plus
Dyak\GE19670-PA 376 GE19670-PA 13..360 102..451 681 37.3 Plus
Dyak\GE18762-PA 340 GE18762-PA 21..329 168..468 361 31.7 Plus
Dyak\GE11832-PA 400 GE11832-PA 83..336 206..451 321 34.1 Plus

IP12247.hyp Sequence

Translation from 1 to 1406

> IP12247.hyp
MSSSIAVVLVVVLIGISESIKTDSLMMTSSLTPEISKSDKLKLIVSQNAE
SSKDTDAIETDISNEHDPRDALKDSSSPDADVLRNKTTEGLISLNNKAEN
TMTGLDDSESLKLARPASSYQEALLNRLQDQLNQFVVGLPLDLGFSTLNY
ICSTIVDLGVVRSKLIPDMSRMSFLLRSSDDCQNTSIPLTQAEQLWNTTG
FYQDRPTVLFITGWTTSINNSNSGPVAKAYLCRNDTNVLILDAANFIDTL
YTWSALNTEVIGDYLAKALLRLNTSYVTKQFHLVGHSLGAQIAGSAGRNY
RRLSGGQILKRITGLDPANPCFYDGNELEGLRSGDARFVDIIHTNPGMFG
TSKRAGDADFFVQGRIPFKPGCESLDPISCSHQRAVDYWTETVYPSNGND
FLAKRCKRYSELLLGNYCKNTNTVMGYAAKATDLGLFYVGANPEEPYGQN
ANLQSYTNSDTKCGSCAS*

IP12247.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG18258-PA 468 CG18258-PA 1..468 1..468 2420 100 Plus
CG5162-PB 411 CG5162-PB 62..387 134..466 678 41 Plus
CG5162-PA 411 CG5162-PA 62..387 134..466 678 41 Plus
CG5665-PB 376 CG5665-PB 54..360 140..451 654 40.3 Plus
CG5665-PC 395 CG5665-PC 54..379 140..451 625 38.3 Plus