Clone IP12254 Report

Search the DGRC for IP12254

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:122
Well:54
Vector:pOT2
Associated Gene/TranscriptCG18744-RB
Protein status:IP12254.pep: gold
Preliminary Size:1299
Sequenced Size:1364

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18744 2005-01-01 Successful iPCR screen
CG18744 2008-04-29 Release 5.5 accounting
CG18744 2008-08-15 Release 5.9 accounting
CG18744 2008-12-18 5.12 accounting

Clone Sequence Records

IP12254.complete Sequence

1364 bp (1364 high quality bases) assembled on 2005-03-28

GenBank Submission: BT022676

> IP12254.complete
TCAACAGAGTCCAGAGAGCTGAAAATGAGCCACCGCTGTGAGATCCAATT
GGACAACCCACGGGGGGTCTATAGGGCCGGCGATACGGTCAATGGTCACG
TCTATCTGACCCTTTCGGAGCGGGCCCTAATCAAAGCAATATGCCTGGAG
GCCAATGGATATGCGAGCACTGCCTGGCAGCAGCCCCAAAAGCACAAGAA
TCAAAAAAAGAACGAGCAGCCAGTGGTGGTTCAGAGTTTGGACTTTGATT
ATCGCGTGGATTATTTTGCCAAAATCGATTATTTTGTGGGCTCGGAGGCC
GCACAGCCACAGATAATGGAGGCGGGCACCTACAATTACGGTTTCCATGT
GAAGCTGCCCAAGAACTGTCCGGGGAATTTCGAGGGGGGCCACGGACACA
TACGGTACACACTCCAAGTACTCATCCACAGCAGTGCAGATCGTCCGCTG
GAGGTGCTCCATGTACGCCAGCTGCAGATTTTCCCGCAGAACTCTCTGAG
CCAGGAGACGCGGAGCTGTGAGATCCAGATCTATGAGCAGACTCCTCGCC
TTAGATTCTGGATGAAGCCACTTCATCTGCAGCTCCAGATTCCCAGGCAG
GGTTATTCGCCAGGAGCAGGTATTTCTGTTCACTTAAAGCTGCATAACCC
GGAGAAATTGACACTTCGCGAGGCGGTGTATTCCCTCGTTCAGATCAGCA
CTTACGTTGCCCATCTAAAGAATAAGCCCAAACGCTTGGAGACCAAGGTG
GAGCGACAAACTGTCCTAAGCAGCCGCCACGAGCTCCACAACCTCCCCCG
TGGAGAACTGCAGAATTTTCAGCATCTTCACATGCTGCAAGTGCCACAAA
CAGCGGCCACATTGACTGTGGCAGGATGTGCCTGCCTGCAGCTCAACTAC
GAGGTGGAGGTGCTGGTCACAACTCAGCAGGAAAAGCGCTTAATTGCGGC
CCGGATGCCGGTCATCATTGGAAATGTGACGCCGCCCTGTCCTGGCAAAC
TCCTAATGCAAGAACCCATTGATGGCACTGCTCCGGAACCAACTCCTCCA
GTCGAAACAGCATCAACATTGATTCCGAATTTTAGCATTTCCACCACATC
TTTGGCTTCGAATTTCCGGGAAGCCGAGTTCATGGTAGCCACCAATCTGA
ATAAGACCAACAAACATTACTTGTCCGGCGAACAGTTGGATTTTAGACCA
CGCTATGTCTACTACGAAATGGACCAGACTCAATCGGAGGAAGTGAAGTC
TCATTAAATGCACGCCACTATTTTATTTTACTAATTTATTTCATTCACTA
GCAAAATTACACAAATATATATTATTCCATTATCACAAAAAAAAAAAAAA
AAAAAAAAAAAAAA

IP12254.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG18744.a 1706 CG18744.a 15..1352 1..1338 6675 99.9 Plus
CG18744-RB 1533 CG18744-RB 178..1515 1..1338 6675 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 3623431..3624401 1105..135 4825 99.8 Minus
chr3R 27901430 chr3R 3623138..3623369 1336..1105 1145 99.6 Minus
chr3R 27901430 chr3R 3624696..3624831 136..1 680 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:13:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7797371..7798341 1105..135 4840 99.9 Minus
3R 32079331 3R 7797076..7797309 1338..1105 1170 100 Minus
3R 32079331 3R 7798636..7798771 136..1 680 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 7538202..7539172 1105..135 4840 99.8 Minus
3R 31820162 3R 7537907..7538140 1338..1105 1170 100 Minus
3R 31820162 3R 7539467..7539602 136..1 680 100 Minus
Blast to na_te.dros performed 2019-03-16 08:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
Circe 7450 Circe CIRC 7450bp 6934..7019 1241..1323 125 64 Plus

IP12254.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:34:44 Download gff for IP12254.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 3623138..3623368 1106..1336 99 <- Minus
chr3R 3623431..3624399 137..1105 99 <- Minus
chr3R 3624696..3624831 1..136 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:51:35 Download gff for IP12254.complete
Subject Subject Range Query Range Percent Splice Strand
CG18744-RB 1..1233 25..1257 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:06:28 Download gff for IP12254.complete
Subject Subject Range Query Range Percent Splice Strand
CG18744-RB 1..1233 25..1257 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:52:24 Download gff for IP12254.complete
Subject Subject Range Query Range Percent Splice Strand
CG18744-RB 1..1233 25..1257 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:51:28 Download gff for IP12254.complete
Subject Subject Range Query Range Percent Splice Strand
CG18744-RB 1..1233 25..1257 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:43:58 Download gff for IP12254.complete
Subject Subject Range Query Range Percent Splice Strand
CG18744-RB 1..1233 25..1257 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:55:39 Download gff for IP12254.complete
Subject Subject Range Query Range Percent Splice Strand
CG18744-RB 1..1336 1..1336 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:06:28 Download gff for IP12254.complete
Subject Subject Range Query Range Percent Splice Strand
CG18744-RB 1..1336 1..1336 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:24 Download gff for IP12254.complete
Subject Subject Range Query Range Percent Splice Strand
CG18744-RB 1..1336 1..1336 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:51:28 Download gff for IP12254.complete
Subject Subject Range Query Range Percent Splice Strand
CG18744-RB 1..1336 1..1336 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:43:58 Download gff for IP12254.complete
Subject Subject Range Query Range Percent Splice Strand
CG18744-RB 1..1336 1..1336 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:34:44 Download gff for IP12254.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7797078..7797308 1106..1336 100 <- Minus
3R 7797371..7798339 137..1105 99 <- Minus
3R 7798636..7798771 1..136 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:34:44 Download gff for IP12254.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7797078..7797308 1106..1336 100 <- Minus
3R 7797371..7798339 137..1105 99 <- Minus
3R 7798636..7798771 1..136 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:34:44 Download gff for IP12254.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7797078..7797308 1106..1336 100 <- Minus
3R 7797371..7798339 137..1105 99 <- Minus
3R 7798636..7798771 1..136 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:24 Download gff for IP12254.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3622800..3623030 1106..1336 100 <- Minus
arm_3R 3623093..3624061 137..1105 99 <- Minus
arm_3R 3624358..3624493 1..136 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:26:17 Download gff for IP12254.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7537909..7538139 1106..1336 100 <- Minus
3R 7538202..7539170 137..1105 99 <- Minus
3R 7539467..7539602 1..136 100   Minus

IP12254.hyp Sequence

Translation from 0 to 1256

> IP12254.hyp
STESRELKMSHRCEIQLDNPRGVYRAGDTVNGHVYLTLSERALIKAICLE
ANGYASTAWQQPQKHKNQKKNEQPVVVQSLDFDYRVDYFAKIDYFVGSEA
AQPQIMEAGTYNYGFHVKLPKNCPGNFEGGHGHIRYTLQVLIHSSADRPL
EVLHVRQLQIFPQNSLSQETRSCEIQIYEQTPRLRFWMKPLHLQLQIPRQ
GYSPGAGISVHLKLHNPEKLTLREAVYSLVQISTYVAHLKNKPKRLETKV
ERQTVLSSRHELHNLPRGELQNFQHLHMLQVPQTAATLTVAGCACLQLNY
EVEVLVTTQQEKRLIAARMPVIIGNVTPPCPGKLLMQEPIDGTAPEPTPP
VETASTLIPNFSISTTSLASNFREAEFMVATNLNKTNKHYLSGEQLDFRP
RYVYYEMDQTQSEEVKSH*

IP12254.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG18744-PB 410 CG18744-PB 1..410 9..418 2157 100 Plus
CG18748-PC 409 CG18748-PC 5..399 13..416 304 26 Plus
CG18745-PA 433 CG18745-PA 1..368 9..387 301 27.3 Plus
CG10086-PA 469 CG10086-PA 1..309 9..326 279 28.7 Plus
CG18747-PB 418 CG18747-PB 5..395 13..407 267 25.8 Plus

IP12254.pep Sequence

Translation from 0 to 1256

> IP12254.pep
STESRELKMSHRCEIQLDNPRGVYRAGDTVNGHVYLTLSERALIKAICLE
ANGYASTAWQQPQKHKNQKKNEQPVVVQSLDFDYRVDYFAKIDYFVGSEA
AQPQIMEAGTYNYGFHVKLPKNCPGNFEGGHGHIRYTLQVLIHSSADRPL
EVLHVRQLQIFPQNSLSQETRSCEIQIYEQTPRLRFWMKPLHLQLQIPRQ
GYSPGAGISVHLKLHNPEKLTLREAVYSLVQISTYVAHLKNKPKRLETKV
ERQTVLSSRHELHNLPRGELQNFQHLHMLQVPQTAATLTVAGCACLQLNY
EVEVLVTTQQEKRLIAARMPVIIGNVTPPCPGKLLMQEPIDGTAPEPTPP
VETASTLIPNFSISTTSLASNFREAEFMVATNLNKTNKHYLSGEQLDFRP
RYVYYEMDQTQSEEVKSH*

IP12254.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23085-PA 403 GF23085-PA 1..401 9..409 1576 71.8 Plus
Dana\GF17284-PA 415 GF17284-PA 1..334 9..360 307 28.7 Plus
Dana\GF17683-PA 477 GF17683-PA 1..309 9..326 292 28 Plus
Dana\GF17283-PA 439 GF17283-PA 4..306 13..326 285 27.1 Plus
Dana\GF17285-PA 436 GF17285-PA 1..365 9..381 282 26.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24951-PA 414 GG24951-PA 1..414 9..418 2009 88.6 Plus
Dere\GG24973-PA 403 GG24973-PA 1..309 9..329 305 28.7 Plus
Dere\GG24984-PA 435 GG24984-PA 1..321 9..337 294 28.5 Plus
Dere\GG14185-PA 469 GG14185-PA 1..309 9..326 283 27.9 Plus
Dere\GG24962-PA 438 GG24962-PA 4..304 13..326 270 26.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18620-PA 428 GH18620-PA 1..427 9..415 1100 50.6 Plus
Dgri\GH19257-PA 430 GH19257-PA 1..305 9..326 289 27.7 Plus
Dgri\GH18318-PA 461 GH18318-PA 1..419 9..412 287 26.1 Plus
Dgri\GH19256-PA 433 GH19256-PA 1..304 9..326 285 28.7 Plus
Dgri\GH19258-PA 404 GH19258-PA 1..379 9..405 271 26.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG18744-PB 410 CG18744-PB 1..410 9..418 2157 100 Plus
CG18748-PC 409 CG18748-PC 5..399 13..416 304 26 Plus
CG18745-PA 433 CG18745-PA 1..368 9..387 301 27.3 Plus
CG10086-PA 469 CG10086-PA 1..309 9..326 279 28.7 Plus
CG18747-PB 418 CG18747-PB 5..395 13..407 267 25.8 Plus
CG1105-PA 422 CG1105-PA 6..343 13..355 256 24.9 Plus
CG18746-PA 438 CG18746-PA 4..323 13..350 254 26.6 Plus
CG2993-PA 511 CG2993-PA 1..303 9..326 244 26.7 Plus
CG2993-PB 524 CG2993-PB 1..303 9..326 244 26.7 Plus
CG2993-PC 545 CG2993-PC 1..303 9..326 244 26.7 Plus
CG18748-PB 359 CG18748-PB 42..349 106..416 205 24.9 Plus
CG2641-PA 429 CG2641-PA 1..375 9..405 159 23.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23464-PA 421 GI23464-PA 1..413 9..415 1106 51.6 Plus
Dmoj\GI23466-PA 427 GI23466-PA 1..303 9..326 293 30.1 Plus
Dmoj\GI24129-PA 464 GI24129-PA 1..419 9..412 289 26.4 Plus
Dmoj\GI23467-PA 430 GI23467-PA 1..305 9..326 265 27.6 Plus
Dmoj\GI23546-PA 409 GI23546-PA 6..332 13..355 255 24.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12152-PA 414 GL12152-PA 1..414 9..418 1537 68.4 Plus
Dper\GL12155-PA 435 GL12155-PA 1..370 9..388 304 27.4 Plus
Dper\GL12153-PA 403 GL12153-PA 4..304 13..326 276 27.2 Plus
Dper\GL12154-PA 435 GL12154-PA 1..337 9..360 266 27.5 Plus
Dper\GL12147-PA 512 GL12147-PA 1..303 9..326 259 26.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15062-PA 414 GA15062-PA 1..409 9..414 1537 68.5 Plus
Dpse\GA15063-PA 435 GA15063-PA 1..370 9..388 300 27.1 Plus
Dpse\GA15064-PA 431 GA15064-PA 4..304 13..326 277 27.7 Plus
Dpse\GA26206-PC 435 GA26206-PC 1..337 9..360 265 27.5 Plus
Dpse\GA10062-PA 466 GA10062-PA 1..328 9..345 263 27.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10456-PA 410 GM10456-PA 1..410 9..418 2036 95.6 Plus
Dsec\GM10459-PA 435 GM10459-PA 1..399 9..407 295 26.3 Plus
Dsec\GM10458-PA 406 GM10458-PA 1..309 9..329 291 28 Plus
Dsec\GM10973-PA 469 GM10973-PA 1..309 9..326 279 28.2 Plus
Dsec\GM10457-PA 438 GM10457-PA 4..304 13..326 271 25.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19460-PA 410 GD19460-PA 1..410 9..418 2144 96.1 Plus
Dsim\GD19463-PA 435 GD19463-PA 1..399 9..407 297 26.6 Plus
Dsim\GD19947-PA 469 GD19947-PA 1..309 9..326 280 28.2 Plus
Dsim\GD19461-PA 438 GD19461-PA 4..304 13..326 266 25.9 Plus
Dsim\GD19457-PA 511 GD19457-PA 1..303 9..326 263 26.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10219-PA 422 GJ10219-PA 1..421 9..415 1116 53.3 Plus
Dvir\GJ10221-PA 431 GJ10221-PA 1..303 9..326 289 29 Plus
Dvir\GJ10952-PA 464 GJ10952-PA 1..419 9..412 284 26.5 Plus
Dvir\GJ24027-PA 410 GJ24027-PA 6..308 13..326 258 25.8 Plus
Dvir\GJ10223-PA 406 GJ10223-PA 1..298 9..324 255 28.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11058-PA 422 GK11058-PA 1..411 9..411 1331 61.3 Plus
Dwil\GK11059-PA 430 GK11059-PA 5..301 13..326 296 30.6 Plus
Dwil\GK11061-PA 412 GK11061-PA 1..390 9..407 292 29.1 Plus
Dwil\GK11060-PA 431 GK11060-PA 1..305 9..326 288 28.6 Plus
Dwil\GK12019-PA 469 GK12019-PA 1..309 9..326 269 26.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25770-PA 410 GE25770-PA 1..409 9..417 1995 91.4 Plus
Dyak\GE11112-PA 410 GE11112-PA 1..409 9..417 1995 91.4 Plus
Dyak\GE25773-PA 435 GE25773-PA 1..399 9..407 297 26.3 Plus
Dyak\GE25771-PA 438 GE25771-PA 4..304 13..326 275 27.1 Plus
Dyak\GE24941-PA 469 GE24941-PA 1..309 9..326 275 28.5 Plus