Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
IP12304.complete Sequence
1578 bp (1578 high quality bases) assembled on 2005-04-11
GenBank Submission: BT022692
> IP12304.complete
AACGCCATCGTGAAATTCGGTCTCAAAATTCGCATTCCGTTCTCCTTTTT
TACCTTTTTGCGTTTCAGTTACAGTTGGCAATGGCCCATACCATCAAGTT
GGACTGGATTAGGAGGATCCTGAATCTTTGCGGCTCTCGACAATGTCGCC
TAATGCATGATGATGCTGAGGCGCGGATCCGCACGCAGAGTCCCTGGAGA
CACCTGATGCGATTGACCAGGAATAACTCGAGCAGTACTTCCGGTGGCAA
TGAACCCCGCAGACAGGACCCAAATAAACCGAAGCCGAATAGCAAGCAAA
TCTCATACACCGAACGGCAAACACCTTTTAGGATCAACACACATCCAAAT
GCTTACCTAGTAGGTATGCATCCTTTGGTCAGAGAGCGGGACAAAAGGAC
GAAGAGGCATAAGCGACGCCTTCCATTTGAAAAGTCAGCAACATTGAGGT
TACACAATGCGCAGCGAAGAGAGGAGCAGCTGGCGAGGACCATGCTATCC
CAGGATTGCAGTGGCCCTCACTCATCCAGCCATACCGCCATACCGCTTAA
GATTCTTCAAATGACGCAAAGGGATCGTATGATGTCCTCGCAGCTGGTAA
TTGATGCGATGAGGACCAGGAATATGGAGAGAATGGTGCGCAAATCGGAG
GCCAGGATGTTGAACGAGCGGGTCAAGAAGCTCCTGGAGAAACAGAAAGA
ATCAAAGTTAGAAGGGAAGAAGCAGCAGTCGGATGATGACTCCACTGTTC
CCGATCCAAAGATCATGGGGCCGGAACAGCGGCCACTGGAGGTCCAGGCG
GTGGTGCAATTGCTAAAGAAGGCCATTTCCCTGGTCCATTTCGGTCACGA
GAATCCCCCGAAGGTGGTGAAGGATGTAAGGATCTCCAGGATGCAGACCA
AACTGGACATAGATGGCCTGCATCCTTGCGGCAGCTCCATTGATTCCTTT
GCCAACACTGACAGCCCGCAGTCATCCAAAGCCTATCACATGCGCATTCG
CTGCACCAAGAGTCCAATATCGGAAATCCAAATCAAATCCAACTCTCAGC
AAATAGCCGTCAGTCTGATGAAGGAGGAGCAGAGGCGCCTGGATCGATTG
AGAGCGGAAAAGGTGCAATTAATCGGGTGTAACGATAGCACAAAACTGGG
TTTCATAAACAGGAATGAAGGTGATGGCAGGTCGGCAAACTCCACAAATC
CTGCCACTTCATCCAAGCCAACAGATTTGAACATGAACTCCTTAATTGTC
GATCCCAAATCTTTTCTCACAAAGGTGCTCGATAAGAAGGAAGTTCTGTC
GGTTGATCAGGTTAATAATAATAATTTCGTAGAAAATCCAGATGTCTTCT
CAAAGGCACTGAAAAGGAAACCAGCGACCAAGTCCAATAGAGGACCTGCT
AAACACTTGCCACAATGAAATCGCATGCTTCAAACTATTCTTTTTATATA
TCCAAAAAAGAACCTGTTAAGAATTACAGATATTAATAACGTTTGTTTAA
ATTAAATTAATTTGAAAATTGATTCCCTTTGGTTTGGAAAATGCAATAAA
ATTAAAAATGAAAAAAAAAAAAAAAAAA
IP12304.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:38:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15196-RB | 1667 | CG15196-RB | 108..1667 | 1..1560 | 7800 | 100 | Plus |
CG15196.a | 1603 | CG15196.a | 403..1603 | 360..1560 | 6005 | 100 | Plus |
CG15196.a | 1603 | CG15196.a | 53..403 | 1..351 | 1755 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:13:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 11301626..11302835 | 351..1560 | 5975 | 99.6 | Plus |
chrX | 22417052 | chrX | 11301367..11301561 | 157..351 | 975 | 100 | Plus |
chrX | 22417052 | chrX | 11301142..11301297 | 1..156 | 765 | 99.4 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:13:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:13:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11410458..11411672 | 351..1565 | 6075 | 100 | Plus |
X | 23542271 | X | 11410199..11410393 | 157..351 | 975 | 100 | Plus |
X | 23542271 | X | 11409974..11410129 | 1..156 | 780 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:28:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 11418556..11419770 | 351..1565 | 6075 | 100 | Plus |
X | 23527363 | X | 11418297..11418491 | 157..351 | 975 | 100 | Plus |
X | 23527363 | X | 11418072..11418227 | 1..156 | 780 | 100 | Plus |
Blast to na_te.dros performed 2019-03-16 01:13:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 3269..3325 | 1346..1399 | 124 | 73.7 | Plus |
IP12304.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:14:35 Download gff for
IP12304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 11301142..11301297 | 1..156 | 99 | -> | Plus |
chrX | 11301367..11301561 | 157..351 | 100 | -> | Plus |
chrX | 11301627..11302835 | 352..1560 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:51:42 Download gff for
IP12304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15196-RA | 24..1377 | 64..1418 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:03:50 Download gff for
IP12304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15196-RB | 1..1338 | 81..1418 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:04:05 Download gff for
IP12304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15196-RB | 1..1338 | 81..1418 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:49:02 Download gff for
IP12304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15196-RA | 24..1377 | 64..1418 | 99 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:27:30 Download gff for
IP12304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15196-RB | 1..1338 | 81..1418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:50:00 Download gff for
IP12304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15196-RA | 24..1517 | 64..1558 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:03:50 Download gff for
IP12304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15196-RB | 28..1587 | 1..1560 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:04:05 Download gff for
IP12304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15196-RB | 28..1587 | 1..1560 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:49:02 Download gff for
IP12304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15196-RA | 24..1517 | 64..1558 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:27:30 Download gff for
IP12304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15196-RB | 28..1587 | 1..1560 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:14:35 Download gff for
IP12304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11409974..11410129 | 1..156 | 100 | -> | Plus |
X | 11410199..11410393 | 157..351 | 100 | -> | Plus |
X | 11410459..11411667 | 352..1560 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:14:35 Download gff for
IP12304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11409974..11410129 | 1..156 | 100 | -> | Plus |
X | 11410199..11410393 | 157..351 | 100 | -> | Plus |
X | 11410459..11411667 | 352..1560 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:14:35 Download gff for
IP12304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11409974..11410129 | 1..156 | 100 | -> | Plus |
X | 11410199..11410393 | 157..351 | 100 | -> | Plus |
X | 11410459..11411667 | 352..1560 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:04:05 Download gff for
IP12304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11304007..11304162 | 1..156 | 100 | -> | Plus |
arm_X | 11304232..11304426 | 157..351 | 100 | -> | Plus |
arm_X | 11304492..11305700 | 352..1560 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:23:36 Download gff for
IP12304.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11418557..11419765 | 352..1560 | 100 | | Plus |
X | 11418072..11418227 | 1..156 | 100 | -> | Plus |
X | 11418297..11418491 | 157..351 | 100 | -> | Plus |
IP12304.hyp Sequence
Translation from 2 to 1417
> IP12304.hyp
RHREIRSQNSHSVLLFYLFAFQLQLAMAHTIKLDWIRRILNLCGSRQCRL
MHDDAEARIRTQSPWRHLMRLTRNNSSSTSGGNEPRRQDPNKPKPNSKQI
SYTERQTPFRINTHPNAYLVGMHPLVRERDKRTKRHKRRLPFEKSATLRL
HNAQRREEQLARTMLSQDCSGPHSSSHTAIPLKILQMTQRDRMMSSQLVI
DAMRTRNMERMVRKSEARMLNERVKKLLEKQKESKLEGKKQQSDDDSTVP
DPKIMGPEQRPLEVQAVVQLLKKAISLVHFGHENPPKVVKDVRISRMQTK
LDIDGLHPCGSSIDSFANTDSPQSSKAYHMRIRCTKSPISEIQIKSNSQQ
IAVSLMKEEQRRLDRLRAEKVQLIGCNDSTKLGFINRNEGDGRSANSTNP
ATSSKPTDLNMNSLIVDPKSFLTKVLDKKEVLSVDQVNNNNFVENPDVFS
KALKRKPATKSNRGPAKHLPQ*
IP12304.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:44:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15196-PB | 445 | CG15196-PB | 1..445 | 27..471 | 2292 | 100 | Plus |
CG15196-PC | 442 | CG15196-PC | 1..442 | 27..471 | 2263 | 99.3 | Plus |
IP12304.pep Sequence
Translation from 2 to 1417
> IP12304.pep
RHREIRSQNSHSVLLFYLFAFQLQLAMAHTIKLDWIRRILNLCGSRQCRL
MHDDAEARIRTQSPWRHLMRLTRNNSSSTSGGNEPRRQDPNKPKPNSKQI
SYTERQTPFRINTHPNAYLVGMHPLVRERDKRTKRHKRRLPFEKSATLRL
HNAQRREEQLARTMLSQDCSGPHSSSHTAIPLKILQMTQRDRMMSSQLVI
DAMRTRNMERMVRKSEARMLNERVKKLLEKQKESKLEGKKQQSDDDSTVP
DPKIMGPEQRPLEVQAVVQLLKKAISLVHFGHENPPKVVKDVRISRMQTK
LDIDGLHPCGSSIDSFANTDSPQSSKAYHMRIRCTKSPISEIQIKSNSQQ
IAVSLMKEEQRRLDRLRAEKVQLIGCNDSTKLGFINRNEGDGRSANSTNP
ATSSKPTDLNMNSLIVDPKSFLTKVLDKKEVLSVDQVNNNNFVENPDVFS
KALKRKPATKSNRGPAKHLPQ*
IP12304.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:25:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF22545-PA | 539 | GF22545-PA | 35..352 | 65..337 | 239 | 28.4 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:25:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG18415-PA | 465 | GG18415-PA | 12..465 | 23..471 | 1625 | 72.1 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15196-PB | 445 | CG15196-PB | 1..445 | 27..471 | 2292 | 100 | Plus |
CG15196-PC | 442 | CG15196-PC | 1..442 | 27..471 | 2263 | 99.3 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:25:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM13077-PA | 359 | GM13077-PA | 6..337 | 19..350 | 1373 | 83.9 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:25:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD24791-PA | 428 | GD24791-PA | 6..428 | 19..471 | 1754 | 80.2 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:25:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE15933-PA | 448 | GE15933-PA | 1..448 | 27..471 | 1647 | 73.6 | Plus |