Clone IP12304 Report

Search the DGRC for IP12304

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:123
Well:4
Vector:pOT2
Associated Gene/TranscriptCG15196-RB
Protein status:IP12304.pep: gold
Preliminary Size:1517
Sequenced Size:1578

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15196 2005-01-01 Successful iPCR screen
CG15196 2008-04-29 Release 5.5 accounting
CG15196 2008-08-15 Release 5.9 accounting
CG15196 2008-12-18 5.12 accounting

Clone Sequence Records

IP12304.complete Sequence

1578 bp (1578 high quality bases) assembled on 2005-04-11

GenBank Submission: BT022692

> IP12304.complete
AACGCCATCGTGAAATTCGGTCTCAAAATTCGCATTCCGTTCTCCTTTTT
TACCTTTTTGCGTTTCAGTTACAGTTGGCAATGGCCCATACCATCAAGTT
GGACTGGATTAGGAGGATCCTGAATCTTTGCGGCTCTCGACAATGTCGCC
TAATGCATGATGATGCTGAGGCGCGGATCCGCACGCAGAGTCCCTGGAGA
CACCTGATGCGATTGACCAGGAATAACTCGAGCAGTACTTCCGGTGGCAA
TGAACCCCGCAGACAGGACCCAAATAAACCGAAGCCGAATAGCAAGCAAA
TCTCATACACCGAACGGCAAACACCTTTTAGGATCAACACACATCCAAAT
GCTTACCTAGTAGGTATGCATCCTTTGGTCAGAGAGCGGGACAAAAGGAC
GAAGAGGCATAAGCGACGCCTTCCATTTGAAAAGTCAGCAACATTGAGGT
TACACAATGCGCAGCGAAGAGAGGAGCAGCTGGCGAGGACCATGCTATCC
CAGGATTGCAGTGGCCCTCACTCATCCAGCCATACCGCCATACCGCTTAA
GATTCTTCAAATGACGCAAAGGGATCGTATGATGTCCTCGCAGCTGGTAA
TTGATGCGATGAGGACCAGGAATATGGAGAGAATGGTGCGCAAATCGGAG
GCCAGGATGTTGAACGAGCGGGTCAAGAAGCTCCTGGAGAAACAGAAAGA
ATCAAAGTTAGAAGGGAAGAAGCAGCAGTCGGATGATGACTCCACTGTTC
CCGATCCAAAGATCATGGGGCCGGAACAGCGGCCACTGGAGGTCCAGGCG
GTGGTGCAATTGCTAAAGAAGGCCATTTCCCTGGTCCATTTCGGTCACGA
GAATCCCCCGAAGGTGGTGAAGGATGTAAGGATCTCCAGGATGCAGACCA
AACTGGACATAGATGGCCTGCATCCTTGCGGCAGCTCCATTGATTCCTTT
GCCAACACTGACAGCCCGCAGTCATCCAAAGCCTATCACATGCGCATTCG
CTGCACCAAGAGTCCAATATCGGAAATCCAAATCAAATCCAACTCTCAGC
AAATAGCCGTCAGTCTGATGAAGGAGGAGCAGAGGCGCCTGGATCGATTG
AGAGCGGAAAAGGTGCAATTAATCGGGTGTAACGATAGCACAAAACTGGG
TTTCATAAACAGGAATGAAGGTGATGGCAGGTCGGCAAACTCCACAAATC
CTGCCACTTCATCCAAGCCAACAGATTTGAACATGAACTCCTTAATTGTC
GATCCCAAATCTTTTCTCACAAAGGTGCTCGATAAGAAGGAAGTTCTGTC
GGTTGATCAGGTTAATAATAATAATTTCGTAGAAAATCCAGATGTCTTCT
CAAAGGCACTGAAAAGGAAACCAGCGACCAAGTCCAATAGAGGACCTGCT
AAACACTTGCCACAATGAAATCGCATGCTTCAAACTATTCTTTTTATATA
TCCAAAAAAGAACCTGTTAAGAATTACAGATATTAATAACGTTTGTTTAA
ATTAAATTAATTTGAAAATTGATTCCCTTTGGTTTGGAAAATGCAATAAA
ATTAAAAATGAAAAAAAAAAAAAAAAAA

IP12304.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG15196-RB 1667 CG15196-RB 108..1667 1..1560 7800 100 Plus
CG15196.a 1603 CG15196.a 403..1603 360..1560 6005 100 Plus
CG15196.a 1603 CG15196.a 53..403 1..351 1755 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:13:37
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 11301626..11302835 351..1560 5975 99.6 Plus
chrX 22417052 chrX 11301367..11301561 157..351 975 100 Plus
chrX 22417052 chrX 11301142..11301297 1..156 765 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:13:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:13:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11410458..11411672 351..1565 6075 100 Plus
X 23542271 X 11410199..11410393 157..351 975 100 Plus
X 23542271 X 11409974..11410129 1..156 780 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 11418556..11419770 351..1565 6075 100 Plus
X 23527363 X 11418297..11418491 157..351 975 100 Plus
X 23527363 X 11418072..11418227 1..156 780 100 Plus
Blast to na_te.dros performed 2019-03-16 01:13:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 3269..3325 1346..1399 124 73.7 Plus

IP12304.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:14:35 Download gff for IP12304.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 11301142..11301297 1..156 99 -> Plus
chrX 11301367..11301561 157..351 100 -> Plus
chrX 11301627..11302835 352..1560 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:51:42 Download gff for IP12304.complete
Subject Subject Range Query Range Percent Splice Strand
CG15196-RA 24..1377 64..1418 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:03:50 Download gff for IP12304.complete
Subject Subject Range Query Range Percent Splice Strand
CG15196-RB 1..1338 81..1418 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:04:05 Download gff for IP12304.complete
Subject Subject Range Query Range Percent Splice Strand
CG15196-RB 1..1338 81..1418 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:49:02 Download gff for IP12304.complete
Subject Subject Range Query Range Percent Splice Strand
CG15196-RA 24..1377 64..1418 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:27:30 Download gff for IP12304.complete
Subject Subject Range Query Range Percent Splice Strand
CG15196-RB 1..1338 81..1418 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:50:00 Download gff for IP12304.complete
Subject Subject Range Query Range Percent Splice Strand
CG15196-RA 24..1517 64..1558 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:03:50 Download gff for IP12304.complete
Subject Subject Range Query Range Percent Splice Strand
CG15196-RB 28..1587 1..1560 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:04:05 Download gff for IP12304.complete
Subject Subject Range Query Range Percent Splice Strand
CG15196-RB 28..1587 1..1560 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:49:02 Download gff for IP12304.complete
Subject Subject Range Query Range Percent Splice Strand
CG15196-RA 24..1517 64..1558 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:27:30 Download gff for IP12304.complete
Subject Subject Range Query Range Percent Splice Strand
CG15196-RB 28..1587 1..1560 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:14:35 Download gff for IP12304.complete
Subject Subject Range Query Range Percent Splice Strand
X 11409974..11410129 1..156 100 -> Plus
X 11410199..11410393 157..351 100 -> Plus
X 11410459..11411667 352..1560 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:14:35 Download gff for IP12304.complete
Subject Subject Range Query Range Percent Splice Strand
X 11409974..11410129 1..156 100 -> Plus
X 11410199..11410393 157..351 100 -> Plus
X 11410459..11411667 352..1560 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:14:35 Download gff for IP12304.complete
Subject Subject Range Query Range Percent Splice Strand
X 11409974..11410129 1..156 100 -> Plus
X 11410199..11410393 157..351 100 -> Plus
X 11410459..11411667 352..1560 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:04:05 Download gff for IP12304.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11304007..11304162 1..156 100 -> Plus
arm_X 11304232..11304426 157..351 100 -> Plus
arm_X 11304492..11305700 352..1560 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:23:36 Download gff for IP12304.complete
Subject Subject Range Query Range Percent Splice Strand
X 11418557..11419765 352..1560 100   Plus
X 11418072..11418227 1..156 100 -> Plus
X 11418297..11418491 157..351 100 -> Plus

IP12304.hyp Sequence

Translation from 2 to 1417

> IP12304.hyp
RHREIRSQNSHSVLLFYLFAFQLQLAMAHTIKLDWIRRILNLCGSRQCRL
MHDDAEARIRTQSPWRHLMRLTRNNSSSTSGGNEPRRQDPNKPKPNSKQI
SYTERQTPFRINTHPNAYLVGMHPLVRERDKRTKRHKRRLPFEKSATLRL
HNAQRREEQLARTMLSQDCSGPHSSSHTAIPLKILQMTQRDRMMSSQLVI
DAMRTRNMERMVRKSEARMLNERVKKLLEKQKESKLEGKKQQSDDDSTVP
DPKIMGPEQRPLEVQAVVQLLKKAISLVHFGHENPPKVVKDVRISRMQTK
LDIDGLHPCGSSIDSFANTDSPQSSKAYHMRIRCTKSPISEIQIKSNSQQ
IAVSLMKEEQRRLDRLRAEKVQLIGCNDSTKLGFINRNEGDGRSANSTNP
ATSSKPTDLNMNSLIVDPKSFLTKVLDKKEVLSVDQVNNNNFVENPDVFS
KALKRKPATKSNRGPAKHLPQ*

IP12304.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG15196-PB 445 CG15196-PB 1..445 27..471 2292 100 Plus
CG15196-PC 442 CG15196-PC 1..442 27..471 2263 99.3 Plus

IP12304.pep Sequence

Translation from 2 to 1417

> IP12304.pep
RHREIRSQNSHSVLLFYLFAFQLQLAMAHTIKLDWIRRILNLCGSRQCRL
MHDDAEARIRTQSPWRHLMRLTRNNSSSTSGGNEPRRQDPNKPKPNSKQI
SYTERQTPFRINTHPNAYLVGMHPLVRERDKRTKRHKRRLPFEKSATLRL
HNAQRREEQLARTMLSQDCSGPHSSSHTAIPLKILQMTQRDRMMSSQLVI
DAMRTRNMERMVRKSEARMLNERVKKLLEKQKESKLEGKKQQSDDDSTVP
DPKIMGPEQRPLEVQAVVQLLKKAISLVHFGHENPPKVVKDVRISRMQTK
LDIDGLHPCGSSIDSFANTDSPQSSKAYHMRIRCTKSPISEIQIKSNSQQ
IAVSLMKEEQRRLDRLRAEKVQLIGCNDSTKLGFINRNEGDGRSANSTNP
ATSSKPTDLNMNSLIVDPKSFLTKVLDKKEVLSVDQVNNNNFVENPDVFS
KALKRKPATKSNRGPAKHLPQ*

IP12304.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22545-PA 539 GF22545-PA 35..352 65..337 239 28.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18415-PA 465 GG18415-PA 12..465 23..471 1625 72.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG15196-PB 445 CG15196-PB 1..445 27..471 2292 100 Plus
CG15196-PC 442 CG15196-PC 1..442 27..471 2263 99.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13077-PA 359 GM13077-PA 6..337 19..350 1373 83.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24791-PA 428 GD24791-PA 6..428 19..471 1754 80.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15933-PA 448 GE15933-PA 1..448 27..471 1647 73.6 Plus