Clone IP12313 Report

Search the DGRC for IP12313

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:123
Well:13
Vector:pOT2
Associated Gene/TranscriptCG15412-RB
Protein status:IP12313.pep: gold
Preliminary Size:1452
Sequenced Size:1875

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15412 2005-01-01 Successful iPCR screen
CG15412 2008-04-29 Release 5.5 accounting
CG15412 2008-08-15 Release 5.9 accounting
CG15412 2008-12-18 5.12 accounting

Clone Sequence Records

IP12313.complete Sequence

1875 bp (1875 high quality bases) assembled on 2005-04-11

GenBank Submission: BT022696

> IP12313.complete
TTGGATCGAGCAGTTCACTAGTTCGTCGGCAGAAACCGATTCCTTCGCCT
ATATAATTTTAGAATCTATTTTTACCCCTAAATATAAGGTACACGCATGT
GTAGAAGTGCGCCATTAGCTGATATTGGGCAAATAGTTACCGAGGAACGT
TAGAAATACTCTAAGGGAGCAGGAAAACAACCAGCATTGCGCCTGCTACC
AAGTGATGTAACCACGAGCAAAACAATTCCTCTAGTGCGCTCATCTCCCA
GCGGCTTCTGCGTCGTATTTTGTTTACCTCTGGGCCGAAACCATAACAGA
GACATGTCGAAAAAGTGCTCCGTGCGATCGCTGAGCGACAGCGCCTTGGC
GGAGCTGGCCAATCTCTTGGTGTCCACCATCAGCTACGCGCAGTATGCCC
CGGACGTGCAGCTGGACATTAACATCGTCATGGTGGAACTGAACGAGTAT
CTGGCCCAGCTGGGAGCAACCCCCAATATATACCAGGATCTGCTCAGGGT
GATCCTCAGCTCGGACTATCTGGACGCCAACATGCGGTTCACCTGCCTGC
AGATGCTGCTCAACTGTGGCGTTACTTTCCTGATGACCGAGGTGTTTCCC
TTCAGCTACTACGAGAAGATCCTGCAGGTGATTGCAGCCCAAGGCGCAGG
ACTGAGAGTGCTGAATATCAAGGGAATCTGGGTCAAGGAGGAGCACATGC
ACTACATGTACGACATAGTGAGGAAATGCAAGCAGCTGGTCAAGTTGTAT
GTGCCCTATATTGCCAACGATCGGCTGCTGGAGGAGATCGGTAACTGCTG
CACCCGTCTGCAGATCCTGGACATTTCCGGCGAGACCGACATCACGGAAA
TCGGCATCGATCTGCTGGCCAAGGGCGTGTGCTCACAATCACTAACCGTT
GTGGATGTGGGCATGCCGGGCGAGGAGAACATCTGCTACTCGGACATTGC
CCTCATCCTGGAGCACTGTCCCCAGGTAGAGACCCTCTCCACTTACTCCT
TTGTCGGCGCCTCCCTGAAGTTTATTCACGACAATGTCGACGATCGCTTC
AAGTGCCGACTGAAGTACATCCACGACACGGGCACGGATGAAGCCACCTT
GCAGGTGATCATGCAGACGTGCCCCAGGCTGGAGACCCTTTATCTGGACT
CGCCCAAGACGGGTAGCCTGAGGGCTCTTAGTACTCGCAATTTGCGCAAA
TTGAAGATCTACAAATTTGTGGTGGCCGAGCTACTGCCCCTGCTGGAGCG
TCCGATTGGCAGGAATCTGCGTCATCTCACCATGATCAAGGGACTGGGGA
ACCTTGAGCTGGGCAAGCTGGCTCGCCTGTGTCCCTCGCTCATTGATCTC
GACTGCTATATGATCGACAGTCTGTCCTACGGAGCCGGACACGCCAAGTT
CCAGCAACTGGAGGGTCTGGAGATTCTGAGCAGCGCCATTCTGACCAGTT
CTTTGAAGGCCTTCCTCTGCAATTCCACCGATCTGAAGAGACTGGCGGTG
GACACGGTGGAGTTCACCGACGATGATATTATGAGCATGTTTATGCAGCA
CGATTTCAAAGTTTTGGAGGATGTGTGGTTCACTCTAGCGCCAGAGCTCA
CAGTGCAGTCTGTGGAGTTATTAATGGACAGCTGCCCGGAACTGCAGTCC
GTGGGTCAACTGAACGGCTGGTCGCTGACGCCCGATGATTTGGCGCTGAT
TCGTGGACTCCTCAAAAGCGGCAATTCGAGCATTCGCCTTCAATAGCACT
CGCGTTGTCTCTCTCCCGCCAGGTGGAGCAAACATTGTTGTGAGCAAGTC
AAGTGTTGTGTATTCTAGTCTGCTTGTGATATTATTAAAATAAAGTTGTT
TTAAATTAAAAAAAAAAAAAAAAAA

IP12313.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG15412-RB 1934 CG15412-RB 74..1931 1..1858 9275 99.9 Plus
CG15412.a 1917 CG15412.a 29..1762 1..1734 8655 99.9 Plus
CG15412.a 1917 CG15412.a 1793..1916 1735..1858 620 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 3373741..3374651 1535..625 4405 98.9 Minus
chr2L 23010047 chr2L 3374703..3375331 629..1 3130 99.8 Minus
chr2L 23010047 chr2L 3373189..3373311 1857..1735 615 100 Minus
chr2L 23010047 chr2L 3373431..3373549 1734..1616 595 100 Minus
chr2L 23010047 chr2L 3373604..3373687 1617..1534 420 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:13:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3374121..3375031 1535..625 4540 99.9 Minus
2L 23513712 2L 3375083..3375711 629..1 3145 100 Minus
2L 23513712 2L 3373568..3373691 1858..1735 620 100 Minus
2L 23513712 2L 3373811..3373929 1734..1616 595 100 Minus
2L 23513712 2L 3373984..3374067 1617..1534 420 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:28:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3374121..3375031 1535..625 4540 99.8 Minus
2L 23513712 2L 3375083..3375711 629..1 3145 100 Minus
2L 23513712 2L 3373568..3373691 1858..1735 620 100 Minus
2L 23513712 2L 3373811..3373929 1734..1616 595 100 Minus
2L 23513712 2L 3373984..3374067 1617..1534 420 100 Minus
Blast to na_te.dros performed on 2019-03-16 09:46:03 has no hits.

IP12313.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:46:58 Download gff for IP12313.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 3373189..3373311 1735..1857 100 <- Minus
chr2L 3373431..3373547 1618..1734 100 <- Minus
chr2L 3373604..3373685 1536..1617 100 <- Minus
chr2L 3373741..3374648 628..1535 98 <- Minus
chr2L 3374705..3375331 1..627 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:51:45 Download gff for IP12313.complete
Subject Subject Range Query Range Percent Splice Strand
CG15412-RB 1..1443 304..1746 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:03:39 Download gff for IP12313.complete
Subject Subject Range Query Range Percent Splice Strand
CG15412-RB 1..1443 304..1746 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:59:26 Download gff for IP12313.complete
Subject Subject Range Query Range Percent Splice Strand
CG15412-RB 1..1443 304..1746 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:48:51 Download gff for IP12313.complete
Subject Subject Range Query Range Percent Splice Strand
CG15412-RB 1..1443 304..1746 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:45:11 Download gff for IP12313.complete
Subject Subject Range Query Range Percent Splice Strand
CG15412-RB 1..1443 304..1746 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:49:42 Download gff for IP12313.complete
Subject Subject Range Query Range Percent Splice Strand
CG15412-RB 1..1857 1..1857 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:03:38 Download gff for IP12313.complete
Subject Subject Range Query Range Percent Splice Strand
CG15412-RB 1..1857 1..1857 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:26 Download gff for IP12313.complete
Subject Subject Range Query Range Percent Splice Strand
CG15412-RB 1..1857 1..1857 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:48:51 Download gff for IP12313.complete
Subject Subject Range Query Range Percent Splice Strand
CG15412-RB 1..1857 1..1857 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:45:11 Download gff for IP12313.complete
Subject Subject Range Query Range Percent Splice Strand
CG15412-RB 1..1857 1..1857 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:46:58 Download gff for IP12313.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3373811..3373927 1618..1734 100 <- Minus
2L 3373984..3374065 1536..1617 100 <- Minus
2L 3373569..3373691 1735..1857 100 <- Minus
2L 3374121..3375028 628..1535 99 <- Minus
2L 3375085..3375711 1..627 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:46:58 Download gff for IP12313.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3373811..3373927 1618..1734 100 <- Minus
2L 3373984..3374065 1536..1617 100 <- Minus
2L 3373569..3373691 1735..1857 100 <- Minus
2L 3374121..3375028 628..1535 99 <- Minus
2L 3375085..3375711 1..627 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:46:58 Download gff for IP12313.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3373811..3373927 1618..1734 100 <- Minus
2L 3373984..3374065 1536..1617 100 <- Minus
2L 3373569..3373691 1735..1857 100 <- Minus
2L 3374121..3375028 628..1535 99 <- Minus
2L 3375085..3375711 1..627 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:26 Download gff for IP12313.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3373569..3373691 1735..1857 100 <- Minus
arm_2L 3373811..3373927 1618..1734 100 <- Minus
arm_2L 3373984..3374065 1536..1617 100 <- Minus
arm_2L 3374121..3375028 628..1535 99 <- Minus
arm_2L 3375085..3375711 1..627 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:23:24 Download gff for IP12313.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3374121..3375028 628..1535 99 <- Minus
2L 3375085..3375711 1..627 100   Minus
2L 3373569..3373691 1735..1857 100 <- Minus
2L 3373811..3373927 1618..1734 100 <- Minus
2L 3373984..3374065 1536..1617 100 <- Minus

IP12313.pep Sequence

Translation from 303 to 1745

> IP12313.pep
MSKKCSVRSLSDSALAELANLLVSTISYAQYAPDVQLDINIVMVELNEYL
AQLGATPNIYQDLLRVILSSDYLDANMRFTCLQMLLNCGVTFLMTEVFPF
SYYEKILQVIAAQGAGLRVLNIKGIWVKEEHMHYMYDIVRKCKQLVKLYV
PYIANDRLLEEIGNCCTRLQILDISGETDITEIGIDLLAKGVCSQSLTVV
DVGMPGEENICYSDIALILEHCPQVETLSTYSFVGASLKFIHDNVDDRFK
CRLKYIHDTGTDEATLQVIMQTCPRLETLYLDSPKTGSLRALSTRNLRKL
KIYKFVVAELLPLLERPIGRNLRHLTMIKGLGNLELGKLARLCPSLIDLD
CYMIDSLSYGAGHAKFQQLEGLEILSSAILTSSLKAFLCNSTDLKRLAVD
TVEFTDDDIMSMFMQHDFKVLEDVWFTLAPELTVQSVELLMDSCPELQSV
GQLNGWSLTPDDLALIRGLLKSGNSSIRLQ*

IP12313.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:35:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15683-PA 480 GF15683-PA 1..480 1..480 2388 93.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:35:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24444-PA 486 GG24444-PA 1..479 1..479 2479 97.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:35:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10469-PA 486 GH10469-PA 1..479 1..479 2209 86.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG15412-PB 480 CG15412-PB 1..480 1..480 2451 100 Plus
CG15412-PC 486 CG15412-PC 1..479 1..479 2438 99.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15875-PA 486 GI15875-PA 1..479 1..479 2134 83.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19521-PA 486 GL19521-PA 1..479 1..479 2329 91.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:35:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13710-PA 486 GA13710-PA 1..479 1..479 2329 91.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18150-PA 486 GM18150-PA 1..479 1..479 2525 99.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22761-PA 486 GD22761-PA 1..479 1..479 2509 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10361-PA 486 GJ10361-PA 1..479 1..479 2149 83.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14597-PA 486 GK14597-PA 1..479 1..479 2288 89.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14886-PA 486 GE14886-PA 1..479 1..479 2474 97.5 Plus

IP12313.hyp Sequence

Translation from 303 to 1745

> IP12313.hyp
MSKKCSVRSLSDSALAELANLLVSTISYAQYAPDVQLDINIVMVELNEYL
AQLGATPNIYQDLLRVILSSDYLDANMRFTCLQMLLNCGVTFLMTEVFPF
SYYEKILQVIAAQGAGLRVLNIKGIWVKEEHMHYMYDIVRKCKQLVKLYV
PYIANDRLLEEIGNCCTRLQILDISGETDITEIGIDLLAKGVCSQSLTVV
DVGMPGEENICYSDIALILEHCPQVETLSTYSFVGASLKFIHDNVDDRFK
CRLKYIHDTGTDEATLQVIMQTCPRLETLYLDSPKTGSLRALSTRNLRKL
KIYKFVVAELLPLLERPIGRNLRHLTMIKGLGNLELGKLARLCPSLIDLD
CYMIDSLSYGAGHAKFQQLEGLEILSSAILTSSLKAFLCNSTDLKRLAVD
TVEFTDDDIMSMFMQHDFKVLEDVWFTLAPELTVQSVELLMDSCPELQSV
GQLNGWSLTPDDLALIRGLLKSGNSSIRLQ*

IP12313.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG15412-PB 480 CG15412-PB 1..480 1..480 2451 100 Plus
CG15412-PC 486 CG15412-PC 1..479 1..479 2438 99.8 Plus