Clone IP12334 Report

Search the DGRC for IP12334

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:123
Well:34
Vector:pOT2
Associated Gene/TranscriptCG17350-RA
Protein status:IP12334.pep: gold
Preliminary Size:1294
Sequenced Size:1323

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17350 2005-01-01 Successful iPCR screen
CG17350 2008-04-29 Release 5.5 accounting
CG17350 2008-08-15 Release 5.9 accounting
CG17350 2008-12-18 5.12 accounting

Clone Sequence Records

IP12334.complete Sequence

1323 bp (1323 high quality bases) assembled on 2005-02-26

GenBank Submission: BT022761

> IP12334.complete
CGGTTTTCAAGTGCGCACACAAAACGCGGCTCCATTCTCGAGATCGATTT
TCGAGAAACTCCCAGGGAAATACCCATTAGAATACTCGACAATGAGCTCT
TTCACCGCCCACCTGTTGATATTGCTCCTCGGTGGTCTGCTGCTAACTCA
TCACTGCGTCCAAGGTCAGGCGAGTAAAGTGTCCTCCAAGTTGGATTTCG
ATGAGAGCGATGGCAGCAACAATCAGAATCAGACGGGCTCACCCGGACAA
CCGGGACAGGCGGGCGGAACTGGCAATGGGAGCTACGACCCGGGAACGGG
ACGAAGCCTGAGTGGTGGAGGAGGAAATGCAGGCGGGGGCAGCAGCGGAA
CTTCCAGCGGGGGAAATCGCCCCAAGATCCACGGAGTACGGGTCACCGTC
GATACGGGCGATGGACAGCAGCAAACGAAAGAGTCCAAGGAGAGCGTGGA
AATTACGGATTTGGGCAAGCACAAGAAGCGCGTGGGCATCCACACGGACA
TCACGTTCGAAATCACCTCCGATTCGGACGGGAACGAGACCAGTTCCGCT
CAACAGCAGGGCGACAAGGAGGACGCCAGTGTGCCAATTTTCAAGGGTCG
TGGTGGCAGCGAATCAAAGCACAAGACCCGCAAGCCATATGATCCCAAGT
CGCAGTGGAATCCCAACTTCTCCGGCGAGCAGCATGGCTACCAGGGCGCC
AATCGAGGTGGCTACCAGGGCTCCAATCGCGGCGACTACTATCCGCAGTA
CTATCACGGCAACGTCTATGCCGGCGGAAGTTCCGATGCAGGCAGCATTT
ACAGGAACGGCGAGACCTGGACGCACTACGTCCCGGTTTGGACCACGGAG
CGAGTGCCGCAGGAGCAGGGACAGATCTATCGGCGGCCCAGCTGGAAGCC
CTGCTACTGCATGTCATCCACGGAGTTCAGACGCCGTCGGGATAGCAAAG
CCAGAAGAGAGCAGACGGATCAGCACAACAAGGGTGTCATCAACAGTGGG
GTTGTCCAGGTGGTGGATGGCAAGTTGGAGCGGCCTTTCTCCTGAGGAAA
AGCCCTCCGCTTTAACCAGTTTTCACAACTTTGTAAAGTTAGGTAATGCA
GAAATATATTTAAAATAGAACTTTAGTTTAGTCTCTTTAGAAATATTATT
TTACTTATTTAAAATATTGGTTGGCCCAATATTTTGAACCCTTTTTCGCT
GACAATAACATATTCCTAATTGCCATCAAACTGTTAGAAAAGAATTGTAT
TTAGGTAAAGAAGGCAAAAAGGAAATTTTAATAAATTTCATATTTGTTTT
TGAAAAAAAAAAAAAAAAAAAAA

IP12334.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG17350-RA 1303 CG17350-RA 2..1303 1..1302 6510 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19381073..19381806 569..1302 3640 99.7 Plus
chr2L 23010047 chr2L 19380398..19380666 163..431 1345 100 Plus
chr2L 23010047 chr2L 19379457..19379622 1..166 815 99.4 Plus
chr2L 23010047 chr2L 19380731..19380870 430..569 700 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:14:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19382538..19383277 569..1308 3700 100 Plus
2L 23513712 2L 19381863..19382131 163..431 1345 100 Plus
2L 23513712 2L 19380921..19381086 1..166 830 100 Plus
2L 23513712 2L 19382196..19382335 430..569 700 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19382538..19383277 569..1308 3700 100 Plus
2L 23513712 2L 19381863..19382131 163..431 1345 100 Plus
2L 23513712 2L 19380921..19381086 1..166 830 100 Plus
2L 23513712 2L 19382196..19382335 430..569 700 100 Plus
Blast to na_te.dros performed 2019-03-16 01:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy9 5349 gypsy9 GYPSY9 5349bp 732..873 1079..1213 116 58.7 Plus

IP12334.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:25:51 Download gff for IP12334.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19379457..19379620 1..164 99 -> Plus
chr2L 19380400..19380666 165..431 100 -> Plus
chr2L 19380733..19380870 432..569 100 -> Plus
chr2L 19381074..19381806 570..1302 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:51:52 Download gff for IP12334.complete
Subject Subject Range Query Range Percent Splice Strand
CG17350-RA 1..954 92..1045 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:10:33 Download gff for IP12334.complete
Subject Subject Range Query Range Percent Splice Strand
CG17350-RA 1..954 92..1045 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:05:49 Download gff for IP12334.complete
Subject Subject Range Query Range Percent Splice Strand
CG17350-RA 1..954 92..1045 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:55:16 Download gff for IP12334.complete
Subject Subject Range Query Range Percent Splice Strand
CG17350-RA 1..954 92..1045 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:32:47 Download gff for IP12334.complete
Subject Subject Range Query Range Percent Splice Strand
CG17350-RA 1..954 92..1045 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:03:23 Download gff for IP12334.complete
Subject Subject Range Query Range Percent Splice Strand
CG17350-RA 1..1293 10..1302 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:10:33 Download gff for IP12334.complete
Subject Subject Range Query Range Percent Splice Strand
CG17350-RA 1..1293 10..1302 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:05:49 Download gff for IP12334.complete
Subject Subject Range Query Range Percent Splice Strand
CG17350-RA 1..1115 10..1124 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:55:16 Download gff for IP12334.complete
Subject Subject Range Query Range Percent Splice Strand
CG17350-RA 1..1293 10..1302 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:32:47 Download gff for IP12334.complete
Subject Subject Range Query Range Percent Splice Strand
CG17350-RA 1..1115 10..1124 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:25:51 Download gff for IP12334.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19380921..19381084 1..164 100 -> Plus
2L 19381865..19382131 165..431 100 -> Plus
2L 19382198..19382335 432..569 100 -> Plus
2L 19382539..19383271 570..1302 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:25:51 Download gff for IP12334.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19380921..19381084 1..164 100 -> Plus
2L 19381865..19382131 165..431 100 -> Plus
2L 19382198..19382335 432..569 100 -> Plus
2L 19382539..19383271 570..1302 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:25:51 Download gff for IP12334.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19380921..19381084 1..164 100 -> Plus
2L 19381865..19382131 165..431 100 -> Plus
2L 19382198..19382335 432..569 100 -> Plus
2L 19382539..19383271 570..1302 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:05:49 Download gff for IP12334.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19380921..19381084 1..164 100 -> Plus
arm_2L 19381865..19382131 165..431 100 -> Plus
arm_2L 19382198..19382335 432..569 100 -> Plus
arm_2L 19382539..19383271 570..1302 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:30:26 Download gff for IP12334.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19381865..19382131 165..431 100 -> Plus
2L 19382198..19382335 432..569 100 -> Plus
2L 19382539..19383271 570..1302 100   Plus
2L 19380921..19381084 1..164 100 -> Plus

IP12334.hyp Sequence

Translation from 0 to 1044

> IP12334.hyp
GFQVRTQNAAPFSRSIFEKLPGKYPLEYSTMSSFTAHLLILLLGGLLLTH
HCVQGQASKVSSKLDFDESDGSNNQNQTGSPGQPGQAGGTGNGSYDPGTG
RSLSGGGGNAGGGSSGTSSGGNRPKIHGVRVTVDTGDGQQQTKESKESVE
ITDLGKHKKRVGIHTDITFEITSDSDGNETSSAQQQGDKEDASVPIFKGR
GGSESKHKTRKPYDPKSQWNPNFSGEQHGYQGANRGGYQGSNRGDYYPQY
YHGNVYAGGSSDAGSIYRNGETWTHYVPVWTTERVPQEQGQIYRRPSWKP
CYCMSSTEFRRRRDSKARREQTDQHNKGVINSGVVQVVDGKLERPFS*

IP12334.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG17350-PA 317 CG17350-PA 1..317 31..347 1712 100 Plus

IP12334.pep Sequence

Translation from 91 to 1044

> IP12334.pep
MSSFTAHLLILLLGGLLLTHHCVQGQASKVSSKLDFDESDGSNNQNQTGS
PGQPGQAGGTGNGSYDPGTGRSLSGGGGNAGGGSSGTSSGGNRPKIHGVR
VTVDTGDGQQQTKESKESVEITDLGKHKKRVGIHTDITFEITSDSDGNET
SSAQQQGDKEDASVPIFKGRGGSESKHKTRKPYDPKSQWNPNFSGEQHGY
QGANRGGYQGSNRGDYYPQYYHGNVYAGGSSDAGSIYRNGETWTHYVPVW
TTERVPQEQGQIYRRPSWKPCYCMSSTEFRRRRDSKARREQTDQHNKGVI
NSGVVQVVDGKLERPFS*

IP12334.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14716-PA 314 GF14716-PA 6..314 3..317 1075 78.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21172-PA 308 GG21172-PA 1..308 1..317 1280 92.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13447-PA 323 GH13447-PA 2..323 4..317 911 64.3 Plus
Dgri\GH17549-PA 321 GH17549-PA 2..321 4..317 903 64.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG17350-PA 317 CG17350-PA 1..317 1..317 1712 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14018-PA 314 GI14018-PA 6..314 5..317 862 63.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21204-PA 321 GL21204-PA 22..321 19..317 1041 72.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14475-PA 322 GA14475-PA 7..322 3..317 1049 69.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17339-PA 316 GM17339-PA 1..316 1..317 1608 96.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24197-PA 316 GD24197-PA 1..316 1..317 1615 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18254-PA 312 GJ18254-PA 11..312 12..317 897 63.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23831-PA 314 GK23831-PA 1..314 1..317 983 67.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13245-PA 318 GE13245-PA 1..318 1..317 1313 93.7 Plus