Clone IP12339 Report

Search the DGRC for IP12339

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:123
Well:39
Vector:pOT2
Associated Gene/TranscriptCG17928-RA
Protein status:IP12339.pep: gold
Preliminary Size:1326
Sequenced Size:2297

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17928 2005-01-01 Successful iPCR screen
CG17928 2008-04-29 Release 5.5 accounting
CG17928 2008-08-15 Release 5.9 accounting
CG17928 2008-12-18 5.12 accounting

Clone Sequence Records

IP12339.complete Sequence

2297 bp (2297 high quality bases) assembled on 2006-09-25

GenBank Submission: BT029091

> IP12339.complete
CTTGGCTGGCGTGGGTCTAGCCGAAAGCAATCAGCTTTTGAGATTGTTGG
GGGTAGTCTTATCTCTAAGAGCTCCAATAAAATAAAATAATTTGATAGGA
ATAAATTCAGCGATTTACTAGGGTTTATTAGCATGGCTACACGTTGAGTT
CACTTTTCTTTTGCTTGGTAAGCATAGGTAATCCTTGTACAACTTACTTA
ATATGAAGCTAAGGATATAAGTATAAGTATAAGTAAGTAATATAAGTGTA
AGTATTTATACTTATACTTTTCTTTTAAACAAAGTTCTGACTTATGGGAA
AATAATGCAATGCACACACTACTCTAGATCGCAATGCTGGCGCCCTTCAA
TGTAAGTATGCTTTGAATCTCATTTACATACTGTTACTTTTTCCTGATAA
GAAGTGAGAGCCACTGAGAGGAAAGCTTTCAATCGGCGATACTCTCAGAG
CTTTACTAATTGATCGAGCGAGTGCGATACGAAAACAAAAGCCGAGCGCC
GCTCCAATAAAAGTTCAGTTGGCGCTACGTAAACAAACTTTGCGGTTAGT
CTGCATCTGGGGTGTCCAGAACGACCGGTTCTTTCGTTAGGCACTAAGAT
GAACTTGGGAATCAAACGGCTAGTTATCAGCAACGATTAAGCACTAGCGT
TCAAGGTACTTCTGGGGTTAAAATAAACTCCATTTATCAGTGTACATCGA
TTAACAAACAGTGCACAAAATGACGCCCAATGTTAAGGACGATGGTGACT
GGAGAGTATCCGGAATATCCAGAAATTACCCGAGCTATCGCCAGCATCGA
CCGATTACCAGTGAAAGCTGGCTGGAGGGGAAAAATGTAGATGACGAGGC
CGAAGGTCTTTGGCGAATTAACGATACGCTCTACGACTTAAGCGACTTTG
CCGCTCGCCATCCGGGTGGTTCATCTTGGATTGAGTGCACCAGGGGAACG
GATATCACCGAGCCCTTCGAGTCACATCATATCGAGGAGCGAGCTCGAGG
AATGCTAAGCAAATTCGAGGTGCGAAAGGCTGCAAGGCCAAGGAACTACA
AGTTCACTCTTGAAGAGAATGGTTTCTATATGACACTGAAGCGGAGAGTG
CGTGAAAAGCTGAGAAAGATCGATTACTCTCCCACTAAGAAAACCGAGTT
TCTCCATCTTGGCATCTTGGTGTCCGTCTTCCTCTTCAGTTGGGCAGGCA
CCGTTCTGGACTCATTGATCTTCAAGGGTCTAGCTGGATTGGCACTTTGC
TGGGTGGCAACCTCAACCCACAATTATTTTCATCAACGGGACAGTTGGCG
GATGTACACTTTCAATCTGACCATGATGAACTTCCGAAACTGGCGAATTT
CTCACGCCCTATCACACCATGTTTATGCTAATTCTCTGCACGACCTGGAG
ATGTCCATGTTTGAGCCGTTCCTATGCTGGATTCCGGATAGTCATTATGC
CAGTAAACCTCAACGATTGATCTCAGTGGTTATCAGCCCCGTGGTATATG
TGGTCTTGTTCCAAGGGCAGTTTCTCATACGCCTGGTCCTTTCCCTGACC
AAAAGAAACGTTCTGTGCTGGGATGATCTCATTGGCTTCAGTCTGCCCAT
TTTTATATATTTATCCACTGGTGTTAGCCTGTTGAGTGCACTTTTAAGCT
GGGAAATAATTATATCGGTTGGGAGCTTTATCTTCGGACTTGTTGGTCTC
ACTGCTGCCCACCATGATCCACGTATTCTACACGATGGAGATGCCCAGCG
ACAGGACTTCGATTGGGGTCTTTACCAGGTGGACACGATTATAGATCGCG
GAGACATCAAGTGGTCGGATCTTCTGGTGCTCACACACTTTGGTGAGCAT
GCTTTGCATCACCTATTTCCCACACTGGATCATGGAGTGCTAAAGCATCT
GTATCCTGAGTTAAGGAAAACCATGAAAGAGTTCGACGTGGAACTGCGGG
AGATCAATCACTGGAGTCACATAAAGGGACAGAATCAGCAATTGCTAAGA
ACAGAGAAGAATCCAATTCCGCCGGGTAGTAAAAAGTTGATGTAGGTGGG
TTTTGGAATTGTAGTGATAATTGGGGAGGGTAATGGTTATTCTGGAAAAA
GGTTATAATAAAGAATAATATTGGGTAAATTATGCAAAAATGTATATATT
AAATACAATGTGACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

IP12339.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG17928-RA 2229 CG17928-RA 10..2177 1..2168 10840 100 Plus
CG17928.e 2617 CG17928.e 10..2177 1..2168 10840 100 Plus
CG17928.a 2155 CG17928.a 654..2112 710..2168 7295 100 Plus
CG17928.a 2155 CG17928.a 1..655 1..655 3275 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 16789758..16790575 1..817 4010 99.6 Plus
chr2L 23010047 chr2L 16791515..16792149 1531..2165 3040 98.6 Plus
chr2L 23010047 chr2L 16791074..16791458 1147..1531 1760 97.1 Plus
chr2L 23010047 chr2L 16790647..16790979 816..1148 1635 99.4 Plus
chr2L 23010047 chr2L 16787790..16787911 1885..1764 235 79.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:14:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16791053..16791869 1..817 4085 100 Plus
2L 23513712 2L 16792809..16793446 1531..2168 3190 100 Plus
2L 23513712 2L 16792368..16792752 1147..1531 1925 100 Plus
2L 23513712 2L 16791941..16792273 816..1148 1665 100 Plus
2L 23513712 2L 16789085..16789206 1885..1764 265 81.1 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16791053..16791869 1..817 4085 100 Plus
2L 23513712 2L 16792809..16793446 1531..2168 3190 100 Plus
2L 23513712 2L 16792368..16792752 1147..1531 1925 100 Plus
2L 23513712 2L 16791941..16792273 816..1148 1665 100 Plus
2L 23513712 2L 16789085..16789206 1885..1764 265 81.1 Minus
2L 23513712 2L 16789715..16789781 1333..1267 155 82 Minus
Blast to na_te.dros performed on 2019-03-16 09:06:36 has no hits.

IP12339.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:07:23 Download gff for IP12339.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 16789758..16790575 1..817 99 -> Plus
chr2L 16790649..16790979 818..1148 99 -> Plus
chr2L 16791076..16791458 1149..1531 97 -> Plus
chr2L 16791516..16792149 1532..2166 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:51:54 Download gff for IP12339.complete
Subject Subject Range Query Range Percent Splice Strand
CG17928-RA 1..1326 720..2045 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:24:58 Download gff for IP12339.complete
Subject Subject Range Query Range Percent Splice Strand
CG17928-RA 1..1326 720..2045 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:57:17 Download gff for IP12339.complete
Subject Subject Range Query Range Percent Splice Strand
CG17928-RA 1..1326 720..2045 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:44:26 Download gff for IP12339.complete
Subject Subject Range Query Range Percent Splice Strand
CG17928-RA 1..1326 720..2045 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:00:21 Download gff for IP12339.complete
Subject Subject Range Query Range Percent Splice Strand
CG17928-RA 1..1326 720..2045 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:53:08 Download gff for IP12339.complete
Subject Subject Range Query Range Percent Splice Strand
CG17928-RA 1..2166 1..2166 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:24:58 Download gff for IP12339.complete
Subject Subject Range Query Range Percent Splice Strand
CG17928-RA 1..2166 1..2166 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:57:17 Download gff for IP12339.complete
Subject Subject Range Query Range Percent Splice Strand
CG17928-RA 1..1651 516..2166 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:44:26 Download gff for IP12339.complete
Subject Subject Range Query Range Percent Splice Strand
CG17928-RA 1..2166 1..2166 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:00:21 Download gff for IP12339.complete
Subject Subject Range Query Range Percent Splice Strand
CG17928-RA 1..1651 516..2166 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:07:23 Download gff for IP12339.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16791053..16791869 1..817 100 -> Plus
2L 16791943..16792273 818..1148 100 -> Plus
2L 16792370..16792752 1149..1531 100 -> Plus
2L 16792810..16793444 1532..2166 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:07:23 Download gff for IP12339.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16791053..16791869 1..817 100 -> Plus
2L 16791943..16792273 818..1148 100 -> Plus
2L 16792370..16792752 1149..1531 100 -> Plus
2L 16792810..16793444 1532..2166 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:07:23 Download gff for IP12339.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16791053..16791869 1..817 100 -> Plus
2L 16791943..16792273 818..1148 100 -> Plus
2L 16792370..16792752 1149..1531 100 -> Plus
2L 16792810..16793444 1532..2166 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:57:17 Download gff for IP12339.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16791053..16791869 1..817 100 -> Plus
arm_2L 16791943..16792273 818..1148 100 -> Plus
arm_2L 16792370..16792752 1149..1531 100 -> Plus
arm_2L 16792810..16793444 1532..2166 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:52:25 Download gff for IP12339.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16791053..16791869 1..817 100 -> Plus
2L 16791943..16792273 818..1148 100 -> Plus
2L 16792370..16792752 1149..1531 100 -> Plus
2L 16792810..16793444 1532..2166 100   Plus

IP12339.pep Sequence

Translation from 719 to 2044

> IP12339.pep
MTPNVKDDGDWRVSGISRNYPSYRQHRPITSESWLEGKNVDDEAEGLWRI
NDTLYDLSDFAARHPGGSSWIECTRGTDITEPFESHHIEERARGMLSKFE
VRKAARPRNYKFTLEENGFYMTLKRRVREKLRKIDYSPTKKTEFLHLGIL
VSVFLFSWAGTVLDSLIFKGLAGLALCWVATSTHNYFHQRDSWRMYTFNL
TMMNFRNWRISHALSHHVYANSLHDLEMSMFEPFLCWIPDSHYASKPQRL
ISVVISPVVYVVLFQGQFLIRLVLSLTKRNVLCWDDLIGFSLPIFIYLST
GVSLLSALLSWEIIISVGSFIFGLVGLTAAHHDPRILHDGDAQRQDFDWG
LYQVDTIIDRGDIKWSDLLVLTHFGEHALHHLFPTLDHGVLKHLYPELRK
TMKEFDVELREINHWSHIKGQNQQLLRTEKNPIPPGSKKLM*

IP12339.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15361-PA 440 GF15361-PA 1..439 1..440 1917 76.6 Plus
Dana\GF14544-PA 436 GF14544-PA 5..436 10..439 1287 53.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22772-PA 441 GG22772-PA 1..440 1..440 2186 92 Plus
Dere\GG20107-PA 436 GG20107-PA 5..436 10..439 1298 55.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11565-PA 440 GH11565-PA 1..439 1..440 1786 73 Plus
Dgri\GH10203-PA 436 GH10203-PA 6..436 11..439 1302 53.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG17928-PB 441 CG17928-PB 1..441 1..441 2371 100 Plus
CG17928-PA 441 CG17928-PA 1..441 1..441 2371 100 Plus
Cyt-b5-r-PB 436 CG13279-PB 5..436 10..439 1303 55.6 Plus
Cyt-b5-r-PA 436 CG13279-PA 5..436 10..439 1303 55.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17056-PA 443 GI17056-PA 1..441 1..439 1726 70.5 Plus
Dmoj\GI14919-PA 436 GI14919-PA 6..436 11..439 1289 54.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18786-PA 440 GL18786-PA 1..440 1..441 1867 75.3 Plus
Dper\GL19332-PA 376 GL19332-PA 2..373 70..439 1114 55.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25795-PA 440 GA25795-PA 1..440 1..441 1871 75.3 Plus
Dpse\GA12166-PA 439 GA12166-PA 5..436 10..439 1302 54.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17205-PA 441 GM17205-PA 1..440 1..440 2278 97 Plus
Dsec\GM17157-PA 436 GM17157-PA 5..436 10..439 1300 55.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24082-PA 441 GD24082-PA 1..440 1..440 2281 96.4 Plus
Dsim\GD21896-PA 436 GD21896-PA 5..436 10..439 1298 55.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17306-PA 440 GJ17306-PA 1..439 1..440 1788 73.2 Plus
Dvir\Cyt-b5-r-PA 436 GJ24061-PA 6..436 11..439 1321 55.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:28:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18233-PA 443 GK18233-PA 1..440 1..438 1740 71.6 Plus
Dwil\GK18156-PA 434 GK18156-PA 5..433 10..436 1289 54.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:28:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12766-PA 441 GE12766-PA 1..440 1..440 2216 93.4 Plus
Dyak\GE13163-PA 436 GE13163-PA 5..436 10..439 1306 55.8 Plus

IP12339.hyp Sequence

Translation from 719 to 2044

> IP12339.hyp
MTPNVKDDGDWRVSGISRNYPSYRQHRPITSESWLEGKNVDDEAEGLWRI
NDTLYDLSDFAARHPGGSSWIECTRGTDITEPFESHHIEERARGMLSKFE
VRKAARPRNYKFTLEENGFYMTLKRRVREKLRKIDYSPTKKTEFLHLGIL
VSVFLFSWAGTVLDSLIFKGLAGLALCWVATSTHNYFHQRDSWRMYTFNL
TMMNFRNWRISHALSHHVYANSLHDLEMSMFEPFLCWIPDSHYASKPQRL
ISVVISPVVYVVLFQGQFLIRLVLSLTKRNVLCWDDLIGFSLPIFIYLST
GVSLLSALLSWEIIISVGSFIFGLVGLTAAHHDPRILHDGDAQRQDFDWG
LYQVDTIIDRGDIKWSDLLVLTHFGEHALHHLFPTLDHGVLKHLYPELRK
TMKEFDVELREINHWSHIKGQNQQLLRTEKNPIPPGSKKLM*

IP12339.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG17928-PB 441 CG17928-PB 1..441 1..441 2371 100 Plus
CG17928-PA 441 CG17928-PA 1..441 1..441 2371 100 Plus
Cyt-b5-r-PB 436 CG13279-PB 5..436 10..439 1303 55.6 Plus
Cyt-b5-r-PA 436 CG13279-PA 5..436 10..439 1303 55.6 Plus