Clone IP12388 Report

Search the DGRC for IP12388

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:123
Well:88
Vector:pOT2
Associated Gene/TranscriptCG31279-RG
Protein status:IP12388.pep: Inserted from web
Preliminary Size:1263
Sequenced Size:1459

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31279 2005-01-01 Successful iPCR screen
CG31279 2008-04-29 Release 5.5 accounting
CG31279 2008-08-15 Release 5.9 accounting
CG31279 2008-12-18 5.12 accounting

Clone Sequence Records

IP12388.complete Sequence

1459 bp (1459 high quality bases) assembled on 2005-04-11

GenBank Submission: BT022214

> IP12388.complete
CTTCGTTCTACTCATCAGACGCCGCACCGACGGCAGCCTGTGTGCCACAA
AGTTCATAGTGCGCGTGCCTCGCGACAAGGACATTGGCTTGATCTTCGAC
TGACCGTCACCAATCGCATCAGGAGTGACAAAAGGGAGACGCTGGACTTC
AATGTCGTCTCGAATGGGGAATGCACTGTGAACACGACCCATGGGGAGCA
GGTGCACGCGATGGGAAGGATCTTTGGCGGGGATTTTGGCTCCGTCGAAC
CGGGCAAGAGTGAAACTGTCTCCCTGGTCTGGCCCACTGTGTCTCTGTAC
AACCGTGTGGGCAGCTGCCCCATTCTAATCTCAGCCACAAGTGCCCACGC
TACGGATGCAGTGGCAACCGCGAGGCAGGTGCTGCACTTTGACACCCGCT
TTGAGACCCTGGATCCGCACGGCAACAAGCTGCGCCGGCGGAAGGATTAC
AAGGACTGTCGCAACTGGGACAAGGATTACCTGCGCAACTGCACACCGCT
GAACTGTGAGGAGCGTTACTTTGGGAAACGGAGCTTTTTCAATAGGGAAA
CGGAACAGTGCGAACCGGTGACTGATTGCTCGGCCCCAGGCGAGTACTAC
GACATCTTCAGCAACGAGCGCGTCGATCCTGGCAATTTCGTGTCCGAGGA
GGAGCTGGACCTCATTAAGCAAGGAAAGTTCGACTTTAATTTTTTGGATT
TGCGGGGGCCACCATCGCAGCATGAGCCGAAAGCCAACAAAGCGCTTCCT
TACAAGAAAAATACCAGGCCAACAAGGCACTTTGTCCATTCCAAGCATGA
GAAGTCAGATGATTGCGACAATTTGCGTAAGCTAACCCTGGCCGATTTTA
ACGACTGCTTTCAGCATTTGCAGGATGGTCAGTCCGAGCCGGTCGCAGTT
GAACCCACAATCGAGAAGAAAATCAAGAAAAAATCGCCATTTGAGGTGCC
CATGCTAACGCAGCTCTATTACGACTGGTATCTTCCTTTAAGGAGCGATA
GCTGGGGGGAAGGCGGAGAAATCGGTGCCATAGGTGATCCCAGTCCACAA
AATGTCTCATCGGGATCGGAACCCCTCATCACGTGGATCGGCAAGCTGGA
TTGGAAGGGCTGGCTGTTCCTGATTCTCAGAGGAAGCTTTTTCATCTTAT
TGCTAATTGTGTTTCAGGTTTTCGCCACTCTGACGGCCTATTTTATAGTG
TGTCTATTTGTCTATGGATTTATGGAACTGTATGGCTTGTGGACTAGTGA
CGATGCACCCGAGACATTTATGTTGGACTCCAGTTCTCAATCCACCGCCT
ACAATCTCGTCACCACAGAAAGTTTGATGTCACATCGATAACCGAGTTTT
AAGAATTTTAAATGTGAATTTATGGTCTTTTTATAAATATTTAATTGTAT
ATTACTGGCTTTAATGTTGGAAATAATGAATTATTAAAATGTAAAAAAAA
AAAAAAAAA

IP12388.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG31279-RB 1482 CG31279-RB 40..1482 1..1442 7175 99.9 Plus
CG31279.b 1559 CG31279.b 117..1559 1..1442 7175 99.9 Plus
CG31279.a 1560 CG31279.a 117..1260 1..1143 5680 99.9 Plus
CG31279.a 1560 CG31279.a 1261..1539 1168..1446 1395 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 12256803..12257229 717..1143 2135 100 Plus
chr3R 27901430 chr3R 12255970..12256396 291..717 2120 99.8 Plus
chr3R 27901430 chr3R 12257288..12257586 1144..1442 1480 99.7 Plus
chr3R 27901430 chr3R 12255689..12255880 100..291 960 100 Plus
chr3R 27901430 chr3R 12255533..12255630 1..98 490 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:14:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16431281..16431707 291..717 2135 100 Plus
3R 32079331 3R 16432114..16432540 717..1143 2135 100 Plus
3R 32079331 3R 16432599..16432901 1144..1446 1515 100 Plus
3R 32079331 3R 16431000..16431191 100..291 960 100 Plus
3R 32079331 3R 16430844..16430941 1..98 490 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 16172945..16173371 717..1143 2135 100 Plus
3R 31820162 3R 16172112..16172538 291..717 2135 100 Plus
3R 31820162 3R 16173430..16173732 1144..1446 1515 100 Plus
3R 31820162 3R 16171831..16172022 100..291 960 100 Plus
3R 31820162 3R 16171675..16171772 1..98 490 100 Plus
Blast to na_te.dros performed on 2019-03-15 21:40:06 has no hits.

IP12388.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:41:13 Download gff for IP12388.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 12255533..12255630 1..98 100 -> Plus
chr3R 12255687..12255880 99..291 99 -> Plus
chr3R 12255971..12256396 292..717 99 -> Plus
chr3R 12256804..12257229 718..1143 100 -> Plus
chr3R 12257288..12257562 1144..1418 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:52:17 Download gff for IP12388.complete
Subject Subject Range Query Range Percent Splice Strand
CG31279-RA 24..743 1..719 99 == Plus
CG31279-RA 744..1097 798..1153 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:03:37 Download gff for IP12388.complete
Subject Subject Range Query Range Percent Splice Strand
CG31279-RB 24..1365 1..1341 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:55:15 Download gff for IP12388.complete
Subject Subject Range Query Range Percent Splice Strand
CG31279-RB 24..1365 1..1341 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:48:49 Download gff for IP12388.complete
Subject Subject Range Query Range Percent Splice Strand
CG31279-RA 24..743 1..719 99 == Plus
CG31279-RA 744..1097 798..1153 98   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:59:59 Download gff for IP12388.complete
Subject Subject Range Query Range Percent Splice Strand
CG31279-RB 24..1365 1..1341 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:49:40 Download gff for IP12388.complete
Subject Subject Range Query Range Percent Splice Strand
CG31279-RA 24..743 1..719 99 == Plus
CG31279-RA 744..1097 798..1153 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:03:37 Download gff for IP12388.complete
Subject Subject Range Query Range Percent Splice Strand
CG31279-RB 40..1482 1..1442 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:55:15 Download gff for IP12388.complete
Subject Subject Range Query Range Percent Splice Strand
CG31279-RB 40..1482 1..1442 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:48:49 Download gff for IP12388.complete
Subject Subject Range Query Range Percent Splice Strand
CG31279-RA 24..743 1..719 99 == Plus
CG31279-RA 744..1097 798..1153 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:59 Download gff for IP12388.complete
Subject Subject Range Query Range Percent Splice Strand
CG31279-RB 40..1482 1..1442 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:41:13 Download gff for IP12388.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16432599..16432897 1144..1442 100   Plus
3R 16430844..16430941 1..98 100 -> Plus
3R 16430998..16431191 99..291 99 -> Plus
3R 16431282..16431707 292..717 100 -> Plus
3R 16432115..16432540 718..1143 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:41:13 Download gff for IP12388.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16432599..16432897 1144..1442 100   Plus
3R 16430844..16430941 1..98 100 -> Plus
3R 16430998..16431191 99..291 99 -> Plus
3R 16431282..16431707 292..717 100 -> Plus
3R 16432115..16432540 718..1143 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:41:13 Download gff for IP12388.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16432599..16432897 1144..1442 100   Plus
3R 16430844..16430941 1..98 100 -> Plus
3R 16430998..16431191 99..291 99 -> Plus
3R 16431282..16431707 292..717 100 -> Plus
3R 16432115..16432540 718..1143 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:55:15 Download gff for IP12388.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12256720..12256913 99..291 99 -> Plus
arm_3R 12256566..12256663 1..98 100 -> Plus
arm_3R 12257004..12257429 292..717 100 -> Plus
arm_3R 12257837..12258262 718..1143 100 -> Plus
arm_3R 12258321..12258619 1144..1442 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:23:23 Download gff for IP12388.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16172113..16172538 292..717 100 -> Plus
3R 16172946..16173371 718..1143 100 -> Plus
3R 16173430..16173728 1144..1442 100   Plus
3R 16171675..16171772 1..98 100 -> Plus
3R 16171829..16172022 99..291 99 -> Plus

IP12388.hyp Sequence

Translation from 0 to 1340

> IP12388.hyp
FVLLIRRRTDGSLCATKFIVRVPRDKDIGLIFDLTVTNRIRSDKRETLDF
NVVSNGECTVNTTHGEQVHAMGRIFGGDFGSVEPGKSETVSLVWPTVSLY
NRVGSCPILISATSAHATDAVATARQVLHFDTRFETLDPHGNKLRRRKDY
KDCRNWDKDYLRNCTPLNCEERYFGKRSFFNRETEQCEPVTDCSAPGEYY
DIFSNERVDPGNFVSEEELDLIKQGKFDFNFLDLRGPPSQHEPKANKALP
YKKNTRPTRHFVHSKHEKSDDCDNLRKLTLADFNDCFQHLQDGQSEPVAV
EPTIEKKIKKKSPFEVPMLTQLYYDWYLPLRSDSWGEGGEIGAIGDPSPQ
NVSSGSEPLITWIGKLDWKGWLFLILRGSFFILLLIVFQVFATLTAYFIV
CLFVYGFMELYGLWTSDDAPETFMLDSSSQSTAYNLVTTESLMSHR*

IP12388.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:15:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG31279-PB 454 CG31279-PB 9..454 1..446 2397 100 Plus
CG31279-PD 445 CG31279-PD 9..445 1..446 2326 98 Plus
CG31279-PE 391 CG31279-PE 9..391 1..384 2054 99.2 Plus
CG31279-PC 391 CG31279-PC 9..391 1..384 2054 99.2 Plus
CG31279-PG 129 CG31279-PG 1..129 318..446 689 100 Plus

IP12388.pep Sequence

Translation from 210 to 1340

> IP12388.pep
MGRIFGGDFGSVEPGKSETVSLVWPTVSLYNRVGSCPILISATSAHATDA
VATARQVLHFDTRFETLDPHGNKLRRRKDYKDCRNWDKDYLRNCTPLNCE
ERYFGKRSFFNRETEQCEPVTDCSAPGEYYDIFSNERVDPGNFVSEEELD
LIKQGKFDFNFLDLRGPPSQHEPKANKALPYKKNTRPTRHFVHSKHEKSD
DCDNLRKLTLADFNDCFQHLQDGQSEPVAVEPTIEKKIKKKSPFEVPMLT
QLYYDWYLPLRSDSWGEGGEIGAIGDPSPQNVSSGSEPLITWIGKLDWKG
WLFLILRGSFFILLLIVFQVFATLTAYFIVCLFVYGFMELYGLWTSDDAP
ETFMLDSSSQSTAYNLVTTESLMSHR*

IP12388.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 01:19:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18494-PA 446 GF18494-PA 81..446 1..376 1095 55.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 01:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17000-PA 454 GG17000-PA 79..454 1..376 1632 83.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 01:19:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19341-PA 423 GH19341-PA 82..339 2..264 556 44.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG31279-PB 454 CG31279-PB 79..454 1..376 2037 100 Plus
CG31279-PD 445 CG31279-PD 79..445 1..376 1966 97.6 Plus
CG31279-PE 391 CG31279-PE 79..391 1..314 1694 99 Plus
CG31279-PC 391 CG31279-PC 79..391 1..314 1694 99 Plus
CG31279-PG 129 CG31279-PG 1..129 248..376 689 100 Plus
CG31279-PF 67 CG31279-PF 1..67 248..314 363 97 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 01:19:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23950-PA 251 GI23950-PA 80..239 4..165 598 67.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 01:19:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21605-PA 420 GL21605-PA 78..419 1..376 747 44.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 01:19:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16145-PA 445 GA16145-PA 78..444 1..376 874 49 Plus
Dpse\GA16145-PB 429 GA16145-PB 78..367 1..313 757 52.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 01:19:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15153-PA 450 GM15153-PA 79..450 1..376 1849 90.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 01:19:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19095-PA 420 GD19095-PA 79..420 1..376 1706 86.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 01:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23739-PA 429 GJ23739-PA 78..427 2..375 693 38.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 01:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13779-PA 411 GK13779-PA 77..411 1..376 786 43.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 01:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24393-PA 450 GE24393-PA 79..450 1..376 1619 82.9 Plus