Clone IP12394 Report

Search the DGRC for IP12394

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:123
Well:94
Vector:pOT2
Associated Gene/TranscriptCG31467-RA
Protein status:IP12394.pep: gold
Preliminary Size:1443
Sequenced Size:1711

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31467 2005-01-01 Successful iPCR screen
CG31467 2008-04-29 Release 5.5 accounting
CG31467 2008-08-15 Release 5.9 accounting
CG31467 2008-12-18 5.12 accounting

Clone Sequence Records

IP12394.complete Sequence

1711 bp (1711 high quality bases) assembled on 2005-02-26

GenBank Submission: BT022216

> IP12394.complete
CAGCATCTAAATTTCAGTCTTTTTGAGGAACATAAATATTTAACTCTCAA
TGTAACGACACTGATTTTTCACTGCTTTTGACTAAAATACGATTTTATAA
ATTTATACCATTATTTACTGCCAAACGCAATGAAGCGCATTCATGTGGAT
AACTACGCCCCAAAGTACTATAGCGGCAAGTGGTCATGGGACTCGGAGAA
AGACTGCCTCCACTTTCAGGCGCACAACGATCTGGAAAACGCAAGAGAGC
GCTATATTATGACCAATGGCTACAGGTTCCTGCGCACAATAGACCAGGAG
GAGGAGCTCATCTTCCGACAGGAGTATGTGCTACCGAAAAGCAACTATAG
TGACGTTGTGGTGGTCGGAGATATTAGAAACTTGGTTCTCTACCTTATGC
CTTCAGAATTTCTAACCTACAAGTTCGTTGAGTTCATGTACGAGCGGGAT
ACGCACTTGTTGCTTCACTCCCTGATTATATACTTTGAGCACTATTTGCG
ACTGGTCGAGTTTATACTTATACGTCGGGATGAGCTTTCCGGTCCCCTGG
GTCAGGTGCAGAGCGAGCAGACCAACGATATGAAACGAACCTTTTCGGTA
TACTTAAGCCAGTATCGTATGCTTGTTGCACGAAACTACTGCCGCATCAT
CGGGGGCGAGGATAATATGTCCAAGTACTACCACATGAAGCCGATTTCCA
ACATTTCAGCAACAATCCACGATAAGTTTTTCCATGAGCATTTTCTGGCA
GTGGCCATCCAAATAGTCTGGATCTGTATGCATCGCCGGGCGTATTACGT
AATCGAAATGGAGATCAATCGCCTTTTCCGCTCCGAGCACTTTGTTTCCG
CCCACCCAGAATACCTCGAGTTCACGGAGGCGGAGCGCAGTCTTCTCTAC
GGCAGAAACAAAAAGAACTACAATTATCGAATTCAGGAATCGCCTCTAGT
CCAGGAGCTAAAGCTGGTTCCTGAAGAGGATTTGCCCATTTTGTGGATAG
GCGAACGCAAGTACAGAGGAAACGATATCCGCATTGCCGAGATTGAGCTG
GAGTACATTGTGCCCGGTTCGCAGCTCAGCTTTATAGATGTATCGCACGG
CATCATGGGCCATCCCAAGAGCCTCTACAACACGCTTCTTAGTCTCGACT
GGCCGGCTGTCCGCTTCTCAAACTTCTCGGAAAAGTTCGATCCGTACCAT
ATAATCAGGAGACCTCACCTGCAAATACCCAAGATAGGTGAGCTTCAGAT
GCGTACAATGAAAGAGAAATATGAACATTTCTACAAGCTCTGTAAGGTTC
ATGAGCGGGTCACACACCATCAGATCTGCAAGTGGGTCAAACGAGACATC
AACATAGCCTTCTTTCGGTCCGGAGGTCTACTCACGAACGTAGTCTCGCG
TTGTGAAAAGGAGTTGGCAAGCACATCTTCAGGACAAAGGGTCGATCAGA
TCATCTCCAACTATTTTAAGATCATGTCCAAAATACGCAAGGAGGATAGA
GATCCGGAGCATGCATCATCTACGCGTAGTAGTATTGCATCGCGATTTAG
TGTAGGCAAGGCAAAGCGGTAAAAAAAACTACCTAATTTTATACGTTAAT
TGCAATTTTTGCATATTATTATATATACAGAAAATCGGAGCTTTAAAGCA
CTGACACTTATGGATTGCTATTTTATAATAAATGCACGAAGACGAAAAAA
AAAAAAAAAAA

IP12394.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG31467-RA 1697 CG31467-RA 1..1697 1..1697 8485 100 Plus
CG31467.a 1647 CG31467.a 1..1237 1..1237 6185 100 Plus
CG31467.a 1647 CG31467.a 1236..1647 1286..1697 2060 100 Plus
CG31391-RA 1708 CG31391-RA 516..886 559..929 1015 84.9 Plus
CG31391-RA 1708 CG31391-RA 99..286 142..329 715 92 Plus
CG31391-RA 1708 CG31391-RA 933..1210 976..1253 415 76.6 Plus
CG31391-RA 1708 CG31391-RA 1281..1453 1324..1496 400 82 Plus
CG31391-RA 1708 CG31391-RA 315..402 358..445 185 80.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:41:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 6530715..6532407 1694..1 8345 99.6 Minus
chr3R 27901430 chr3R 6529168..6530522 1496..142 2365 78.3 Minus
chr3R 27901430 chr3R 6535640..6536267 1179..552 470 71.7 Minus
chr3R 27901430 chr3R 6536491..6536671 322..142 395 81.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:14:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10705167..10706863 1697..1 8485 100 Minus
3R 32079331 3R 10703623..10704977 1496..142 2380 78.4 Minus
3R 32079331 3R 10710096..10710723 1179..552 470 71.7 Minus
3R 32079331 3R 10710947..10711127 322..142 395 81.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10445998..10447694 1697..1 8485 100 Minus
3R 31820162 3R 10445021..10445391 929..559 1015 84.9 Minus
3R 31820162 3R 10445621..10445808 329..142 715 92 Minus
3R 31820162 3R 10444697..10444974 1253..976 415 76.6 Minus
3R 31820162 3R 10444454..10444626 1496..1324 400 82 Minus
3R 31820162 3R 10451778..10451958 322..142 395 81.2 Minus
3R 31820162 3R 10450927..10451167 1179..939 320 75.5 Minus
3R 31820162 3R 10451260..10451376 846..730 195 77.7 Minus
3R 31820162 3R 10445505..10445592 445..358 185 80.6 Minus
Blast to na_te.dros performed 2019-03-16 01:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dm88 4558 Dm88 DM88 4558bp 23..61 1633..1595 114 76.9 Minus
Dm88 4558 Dm88 DM88 4558bp 4383..4421 1633..1595 114 76.9 Minus

IP12394.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:42:25 Download gff for IP12394.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 6530715..6532407 1..1694 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:52:21 Download gff for IP12394.complete
Subject Subject Range Query Range Percent Splice Strand
CG31467-RA 1..1443 130..1572 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:10:27 Download gff for IP12394.complete
Subject Subject Range Query Range Percent Splice Strand
CG31467-RA 1..1443 130..1572 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:56:27 Download gff for IP12394.complete
Subject Subject Range Query Range Percent Splice Strand
CG31467-RA 1..1443 130..1572 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:55:10 Download gff for IP12394.complete
Subject Subject Range Query Range Percent Splice Strand
CG31467-RA 1..1443 130..1572 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:40:23 Download gff for IP12394.complete
Subject Subject Range Query Range Percent Splice Strand
CG31467-RA 1..1443 130..1572 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:03:06 Download gff for IP12394.complete
Subject Subject Range Query Range Percent Splice Strand
CG31467-RA 1..1694 1..1694 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:10:27 Download gff for IP12394.complete
Subject Subject Range Query Range Percent Splice Strand
CG31467-RA 1..1694 1..1694 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:56:27 Download gff for IP12394.complete
Subject Subject Range Query Range Percent Splice Strand
CG31467-RA 1..1694 1..1694 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:55:10 Download gff for IP12394.complete
Subject Subject Range Query Range Percent Splice Strand
CG31467-RA 1..1694 1..1694 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:40:23 Download gff for IP12394.complete
Subject Subject Range Query Range Percent Splice Strand
CG31467-RA 1..1694 1..1694 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:42:25 Download gff for IP12394.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10705170..10706863 1..1694 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:42:25 Download gff for IP12394.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10705170..10706863 1..1694 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:42:25 Download gff for IP12394.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10705170..10706863 1..1694 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:56:27 Download gff for IP12394.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6530892..6532585 1..1694 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:30:20 Download gff for IP12394.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10446001..10447694 1..1694 100   Minus

IP12394.pep Sequence

Translation from 129 to 1571

> IP12394.pep
MKRIHVDNYAPKYYSGKWSWDSEKDCLHFQAHNDLENARERYIMTNGYRF
LRTIDQEEELIFRQEYVLPKSNYSDVVVVGDIRNLVLYLMPSEFLTYKFV
EFMYERDTHLLLHSLIIYFEHYLRLVEFILIRRDELSGPLGQVQSEQTND
MKRTFSVYLSQYRMLVARNYCRIIGGEDNMSKYYHMKPISNISATIHDKF
FHEHFLAVAIQIVWICMHRRAYYVIEMEINRLFRSEHFVSAHPEYLEFTE
AERSLLYGRNKKNYNYRIQESPLVQELKLVPEEDLPILWIGERKYRGNDI
RIAEIELEYIVPGSQLSFIDVSHGIMGHPKSLYNTLLSLDWPAVRFSNFS
EKFDPYHIIRRPHLQIPKIGELQMRTMKEKYEHFYKLCKVHERVTHHQIC
KWVKRDINIAFFRSGGLLTNVVSRCEKELASTSSGQRVDQIISNYFKIMS
KIRKEDRDPEHASSTRSSIASRFSVGKAKR*

IP12394.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17445-PA 465 GF17445-PA 1..457 1..456 1799 70.2 Plus
Dana\GF20669-PA 487 GF20669-PA 1..479 1..480 1692 66 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17277-PA 483 GG17277-PA 1..480 1..480 2330 90.2 Plus
Dere\GG17278-PA 477 GG17278-PA 1..456 1..456 1971 78.7 Plus
Dere\GG17274-PA 487 GG17274-PA 1..453 1..454 1677 68.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17359-PA 490 GH17359-PA 1..481 1..480 1615 61 Plus
Dgri\GH17029-PA 487 GH17029-PA 1..456 1..455 1437 57 Plus
Dgri\GH13925-PA 208 GH13925-PA 2..176 280..454 497 49.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG31467-PA 480 CG31467-PA 1..480 1..480 2536 100 Plus
CG31391-PA 480 CG31391-PA 1..456 1..456 1944 78.5 Plus
CG14689-PA 487 CG14689-PA 1..469 1..469 1685 68.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23898-PA 491 GI23898-PA 1..469 1..471 1592 61.2 Plus
Dmoj\GI11569-PA 480 GI11569-PA 1..469 1..468 1496 57.4 Plus
Dmoj\GI12233-PA 477 GI12233-PA 1..466 1..465 1463 55.8 Plus
Dmoj\GI21012-PA 486 GI21012-PA 1..454 1..455 1396 56.1 Plus
Dmoj\GI21013-PA 453 GI21013-PA 1..449 1..453 1141 48.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12631-PA 489 GL12631-PA 1..469 1..468 1769 70.1 Plus
Dper\GL12630-PA 455 GL12630-PA 1..454 1..454 1527 63.3 Plus
Dper\GL12629-PA 456 GL12629-PA 1..455 1..454 1429 61.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13178-PA 489 GA13178-PA 1..469 1..468 1769 70.1 Plus
Dpse\GA27575-PA 455 GA27575-PA 1..454 1..454 1523 63.3 Plus
Dpse\GA27574-PA 456 GA27574-PA 1..455 1..454 1429 61.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26161-PA 480 GM26161-PA 1..480 1..480 2478 94.8 Plus
Dsec\GM26162-PA 480 GM26162-PA 1..456 1..456 1964 78.3 Plus
Dsec\GM26158-PA 487 GM26158-PA 1..479 1..480 1700 66.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20714-PA 480 GD20714-PA 1..480 1..480 2478 94.8 Plus
Dsim\GD20715-PA 480 GD20715-PA 1..456 1..456 1964 78.3 Plus
Dsim\GD20711-PA 487 GD20711-PA 1..471 1..471 1706 67.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23991-PA 494 GJ23991-PA 1..469 1..476 1649 62.7 Plus
Dvir\GJ11249-PA 484 GJ11249-PA 1..456 1..455 1592 62.7 Plus
Dvir\GJ21935-PA 500 GJ21935-PA 1..481 1..476 1513 57.8 Plus
Dvir\GJ21936-PA 458 GJ21936-PA 1..456 1..455 1464 58.3 Plus
Dvir\GJ23990-PA 487 GJ23990-PA 1..474 1..477 1407 56.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11284-PA 498 GK11284-PA 1..473 1..474 1741 66.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24679-PA 484 GE24679-PA 1..481 1..480 2329 89.8 Plus
Dyak\GE24680-PA 483 GE24680-PA 1..472 1..476 1946 75.6 Plus
Dyak\GE24675-PA 487 GE24675-PA 1..471 1..471 1691 67.5 Plus

IP12394.hyp Sequence

Translation from 129 to 1571

> IP12394.hyp
MKRIHVDNYAPKYYSGKWSWDSEKDCLHFQAHNDLENARERYIMTNGYRF
LRTIDQEEELIFRQEYVLPKSNYSDVVVVGDIRNLVLYLMPSEFLTYKFV
EFMYERDTHLLLHSLIIYFEHYLRLVEFILIRRDELSGPLGQVQSEQTND
MKRTFSVYLSQYRMLVARNYCRIIGGEDNMSKYYHMKPISNISATIHDKF
FHEHFLAVAIQIVWICMHRRAYYVIEMEINRLFRSEHFVSAHPEYLEFTE
AERSLLYGRNKKNYNYRIQESPLVQELKLVPEEDLPILWIGERKYRGNDI
RIAEIELEYIVPGSQLSFIDVSHGIMGHPKSLYNTLLSLDWPAVRFSNFS
EKFDPYHIIRRPHLQIPKIGELQMRTMKEKYEHFYKLCKVHERVTHHQIC
KWVKRDINIAFFRSGGLLTNVVSRCEKELASTSSGQRVDQIISNYFKIMS
KIRKEDRDPEHASSTRSSIASRFSVGKAKR*

IP12394.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG31467-PA 480 CG31467-PA 1..480 1..480 2536 100 Plus
CG31391-PA 480 CG31391-PA 1..456 1..456 1944 78.5 Plus
CG14689-PA 487 CG14689-PA 1..469 1..469 1685 68.2 Plus