Clone IP12408 Report

Search the DGRC for IP12408

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:124
Well:8
Vector:pOT2
Associated Gene/TranscriptSpn28Da-RB
Protein status:IP12408.pep: gold
Preliminary Size:1253
Sequenced Size:1285

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31902 2005-01-01 Successful iPCR screen
CG31902 2008-04-29 Release 5.5 accounting
CG31902 2008-08-15 Release 5.9 accounting
CG31902 2008-12-18 5.12 accounting

Clone Sequence Records

IP12408.complete Sequence

1285 bp (1285 high quality bases) assembled on 2005-03-28

GenBank Submission: BT022219

> IP12408.complete
CAGAGAGTATAGCATGAAGTACTTGTGTTGGATCTTAGTGACCACGTCAG
TGCTAGGTCAATTCACCAAGCAACTTTACCGAAGCTTTTTGCAGGATAAT
AAACAATATAACATCATTGCCTCGCCTCTTTGCGTCGAGATTGGAATGAG
CATGATCCTCATGGGAGCGGATGGAAATACAGCCAATGAACTGAGGACGG
CTCTGAATCTGCCAGAGGATAAAAAGAATGTAGCTACTATATATGATAAG
CTTTTGACTAAACTCGAAAGGGGCAAGAAGGTAGCCATTCTCCACTTGGC
GAATCGCTTGTTTGTCAACGAAACAATTGGTGTTAACAAGCGCTACAATA
AACTAGTCAATAAGCACTTTAGGGCCGAGGCAGAAGCCATTAAGCTGGCC
GATCGATTGAAGGCAGCCTGGGCTATAAACGATTGGGTGCTCGACCAGAC
ACTAGATAATGTGAAAGACATTATAATACCCAGTGACTTGACGCCCGATG
AAAGTGCGGTCATGATCAACGCAGCTTTCTTCAAGGGCTACTGGAAGACG
CGATTCGATAAGATGAACACCAAGCCCAAGGTATTCTATGTATCCAAAAG
TTACCAAGTAAATGTCAATATGATGTCGCAAGTGGGTCGATTTAAGATGC
GTACTTCGACCATAGACCAAATTATTGAGCTTCCATTTGCATACTCAAAC
CTTTCAATGGTAATCGTTCTGCCCAAGGACAATGGGTCCCTAACTCAGGC
AGAAGCCACAATCGAAAGTTACCCTCAGATAGTTCTCACTGAAATGGATG
TACATGTGCAGCTTCCTAAATTTAAAATCGATTTCCGCATGGAGCTCGTC
GAAACTCTTAAAAGCATGGGAATACAGGATCTCTTCAATAGTTCGTCGGA
TATCAGCGTCCTACTGAACCAGTCTGGCACTAGAATCAGCCAAGTCGTAC
ACAAAGCCTTTATAGAGATTGACGAAGAAGGCGGGTCCGCAGGATCCGCT
TCTGCGAGCCCCATTCGAGGATTATCTGATTATGCGACTAGTGTGGTTAC
TTTTACAGTCAATAGTCCCTTTGTCTTCATGATTCGCGATGATGACAACA
TATATTTCCGTGGCCGAGTCGTTGATCCTTTGAAGAAGAGCAATCCCATT
GACCGTATAACCATATAGAATGTAACGGGTATCTAATAGTCGAGAAACTC
TACACCATTTTATCTATTGCGCAAAGTGAATTTTTGCGAATACAATAAAG
AAAAATTCGTCTCGTCAAAAAAAAAAAAAAAAAAA

IP12408.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG31902-RB 1272 CG31902-RB 7..1272 1..1266 6330 100 Plus
CG31902.a 1309 CG31902.a 44..1309 1..1266 6330 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 7887242..7888080 865..27 4105 99.3 Minus
chr2L 23010047 chr2L 7886729..7886968 1266..1028 1150 99.6 Minus
chr2L 23010047 chr2L 7887025..7887187 1028..866 815 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 18:14:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7888205..7889043 865..27 4195 100 Minus
2L 23513712 2L 7887693..7887931 1266..1028 1195 100 Minus
2L 23513712 2L 7887988..7888150 1028..866 815 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7888205..7889043 865..27 4195 100 Minus
2L 23513712 2L 7887693..7887931 1266..1028 1195 100 Minus
2L 23513712 2L 7887988..7888150 1028..866 815 100 Minus
2L 23513712 2L 7889098..7889125 28..1 140 100 Minus
Blast to na_te.dros performed 2019-03-16 11:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
INE-1 611 INE-1 INE1 611bp Derived from U66884 (e1371475) (Rel. 52, Last updated, Version 6). 551..600 1172..1218 144 80 Plus

IP12408.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:51:55 Download gff for IP12408.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 7887025..7887187 866..1028 100 <- Minus
chr2L 7887242..7888080 27..865 99 <- Minus
chr2L 7888136..7888161 1..26 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:52:25 Download gff for IP12408.complete
Subject Subject Range Query Range Percent Splice Strand
CG31902-RB 1..1155 14..1168 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:06:33 Download gff for IP12408.complete
Subject Subject Range Query Range Percent Splice Strand
Spn28Da-RB 1..1155 14..1168 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:05:50 Download gff for IP12408.complete
Subject Subject Range Query Range Percent Splice Strand
Spn28Da-RB 1..1155 14..1168 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:51:32 Download gff for IP12408.complete
Subject Subject Range Query Range Percent Splice Strand
CG31902-RB 1..1155 14..1168 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:27:41 Download gff for IP12408.complete
Subject Subject Range Query Range Percent Splice Strand
Spn28Da-RB 1..1155 14..1168 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:55:48 Download gff for IP12408.complete
Subject Subject Range Query Range Percent Splice Strand
CG31902-RB 5..1270 1..1266 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:06:33 Download gff for IP12408.complete
Subject Subject Range Query Range Percent Splice Strand
Spn28Da-RB 5..1270 1..1266 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:05:50 Download gff for IP12408.complete
Subject Subject Range Query Range Percent Splice Strand
Spn28Da-RB 5..1270 1..1266 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:51:32 Download gff for IP12408.complete
Subject Subject Range Query Range Percent Splice Strand
CG31902-RB 5..1270 1..1266 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:27:41 Download gff for IP12408.complete
Subject Subject Range Query Range Percent Splice Strand
Spn28Da-RB 5..1270 1..1266 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:51:55 Download gff for IP12408.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7887693..7887930 1029..1266 100 <- Minus
2L 7887988..7888150 866..1028 100 <- Minus
2L 7888205..7889043 27..865 100 <- Minus
2L 7889100..7889125 1..26 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:51:55 Download gff for IP12408.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7887693..7887930 1029..1266 100 <- Minus
2L 7887988..7888150 866..1028 100 <- Minus
2L 7888205..7889043 27..865 100 <- Minus
2L 7889100..7889125 1..26 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:51:55 Download gff for IP12408.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7887693..7887930 1029..1266 100 <- Minus
2L 7887988..7888150 866..1028 100 <- Minus
2L 7888205..7889043 27..865 100 <- Minus
2L 7889100..7889125 1..26 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:05:50 Download gff for IP12408.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7887988..7888150 866..1028 100 <- Minus
arm_2L 7887693..7887930 1029..1266 100 <- Minus
arm_2L 7888205..7889043 27..865 100 <- Minus
arm_2L 7889100..7889125 1..26 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:26:23 Download gff for IP12408.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7887693..7887930 1029..1266 100 <- Minus
2L 7887988..7888150 866..1028 100 <- Minus
2L 7888205..7889043 27..865 100 <- Minus
2L 7889100..7889125 1..26 100   Minus

IP12408.hyp Sequence

Translation from 0 to 1167

> IP12408.hyp
REYSMKYLCWILVTTSVLGQFTKQLYRSFLQDNKQYNIIASPLCVEIGMS
MILMGADGNTANELRTALNLPEDKKNVATIYDKLLTKLERGKKVAILHLA
NRLFVNETIGVNKRYNKLVNKHFRAEAEAIKLADRLKAAWAINDWVLDQT
LDNVKDIIIPSDLTPDESAVMINAAFFKGYWKTRFDKMNTKPKVFYVSKS
YQVNVNMMSQVGRFKMRTSTIDQIIELPFAYSNLSMVIVLPKDNGSLTQA
EATIESYPQIVLTEMDVHVQLPKFKIDFRMELVETLKSMGIQDLFNSSSD
ISVLLNQSGTRISQVVHKAFIEIDEEGGSAGSASASPIRGLSDYATSVVT
FTVNSPFVFMIRDDDNIYFRGRVVDPLKKSNPIDRITI*

IP12408.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
Spn28Da-PB 384 CG31902-PB 1..384 5..388 1945 100 Plus
Spn42Dd-PB 372 CG9456-PB 1..372 5..376 743 42.3 Plus
Spn38F-PA 372 CG9334-PA 1..370 5..376 715 42.7 Plus
Spn38F-PB 370 CG9334-PB 1..368 5..376 709 42.1 Plus
Spn28F-PA 375 CG8137-PA 1..373 5..376 705 41.9 Plus

IP12408.pep Sequence

Translation from 1 to 1167

> IP12408.pep
REYSMKYLCWILVTTSVLGQFTKQLYRSFLQDNKQYNIIASPLCVEIGMS
MILMGADGNTANELRTALNLPEDKKNVATIYDKLLTKLERGKKVAILHLA
NRLFVNETIGVNKRYNKLVNKHFRAEAEAIKLADRLKAAWAINDWVLDQT
LDNVKDIIIPSDLTPDESAVMINAAFFKGYWKTRFDKMNTKPKVFYVSKS
YQVNVNMMSQVGRFKMRTSTIDQIIELPFAYSNLSMVIVLPKDNGSLTQA
EATIESYPQIVLTEMDVHVQLPKFKIDFRMELVETLKSMGIQDLFNSSSD
ISVLLNQSGTRISQVVHKAFIEIDEEGGSAGSASASPIRGLSDYATSVVT
FTVNSPFVFMIRDDDNIYFRGRVVDPLKKSNPIDRITI*

IP12408.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13146-PA 360 GF13146-PA 1..359 18..376 668 39.9 Plus
Dana\GF19634-PA 394 GF19634-PA 25..387 9..376 596 40 Plus
Dana\GF15866-PA 371 GF15866-PA 1..371 5..376 574 39 Plus
Dana\GF19633-PA 329 GF19633-PA 1..329 49..376 521 39.3 Plus
Dana\GF11763-PA 376 GF11763-PA 13..371 18..372 472 31.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16666-PA 247 GG16666-PA 1..242 49..290 1075 83.9 Plus
Dere\GG23230-PA 372 GG23230-PA 1..372 5..376 769 42.3 Plus
Dere\GG23495-PA 321 GG23495-PA 2..302 32..336 692 47.4 Plus
Dere\GG23463-PA 372 GG23463-PA 1..371 5..376 684 41.5 Plus
Dere\GG10484-PA 378 GG10484-PA 1..376 5..376 617 36.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22013-PA 401 GH22013-PA 33..383 37..380 468 30.7 Plus
Dgri\GH19862-PA 382 GH19862-PA 16..378 18..372 458 30.6 Plus
Dgri\GH21519-PA 384 GH21519-PA 1..382 5..374 458 30.2 Plus
Dgri\GH23432-PA 384 GH23432-PA 18..384 21..376 388 27.9 Plus
Dgri\GH20251-PA 377 GH20251-PA 15..372 21..375 386 27 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:15
Subject Length Description Subject Range Query Range Score Percent Strand
Spn28Da-PB 384 CG31902-PB 1..384 5..388 1945 100 Plus
Spn42Dd-PB 372 CG9456-PB 1..372 5..376 743 42.3 Plus
Spn38F-PA 372 CG9334-PA 1..370 5..376 715 42.7 Plus
Spn38F-PB 370 CG9334-PB 1..368 5..376 709 42.1 Plus
Spn28Db-PB 377 CG33121-PB 7..369 5..374 707 44.8 Plus
Spn28F-PA 375 CG8137-PA 1..373 5..376 705 41.9 Plus
Spn28B-PB 378 CG6717-PB 1..376 5..376 616 36.4 Plus
Spn28B-PA 378 CG6717-PA 1..376 5..376 616 36.4 Plus
Spn42De-PB 386 CG9460-PB 16..383 20..373 476 34.2 Plus
Spn42De-PA 404 CG9460-PA 34..401 20..373 476 34.2 Plus
Spn42Dc-PB 403 CG9455-PB 10..380 20..376 451 30.5 Plus
Spn42Dc-PA 403 CG9455-PA 10..380 20..376 451 30.5 Plus
Spn55B-PA 374 CG10913-PA 14..371 20..374 444 29.5 Plus
Spn43Aa-PA 390 CG12172-PA 30..388 21..374 444 30.5 Plus
Spn42Da-PL 379 CG9453-PL 13..376 18..373 429 30 Plus
Spn42Da-PK 379 CG9453-PK 13..376 18..373 429 30 Plus
Spn42Da-PH 379 CG9453-PH 13..376 18..373 429 30 Plus
Spn42Da-PF 411 CG9453-PF 45..408 18..373 429 30 Plus
Spn42Da-PE 411 CG9453-PE 45..408 18..373 429 30 Plus
nec-PA 476 CG1857-PA 105..475 16..380 426 28.8 Plus
Spn42Da-PJ 374 CG9453-PJ 13..371 18..372 421 30.8 Plus
Spn42Da-PI 406 CG9453-PI 45..403 18..372 421 30.8 Plus
Spn42Da-PG 379 CG9453-PG 13..368 18..366 420 29.8 Plus
Spn42Da-PD 411 CG9453-PD 45..400 18..366 420 29.8 Plus
Spn42Da-PA 392 CG9453-PA 13..377 18..374 414 29.3 Plus
Spn42Da-PB 424 CG9453-PB 45..409 18..374 414 29.3 Plus
Spn47C-PC 382 CG7722-PC 18..382 21..376 408 30.3 Plus
Spn47C-PB 382 CG7722-PB 18..382 21..376 408 30.3 Plus
Spn47C-PA 382 CG7722-PA 18..382 21..376 408 30.3 Plus
Spn42Db-PC 388 CG9454-PC 10..374 18..374 367 30 Plus
Spn27A-PB 447 CG11331-PB 76..443 21..376 336 27 Plus
Spn27A-PA 447 CG11331-PA 76..443 21..376 336 27 Plus
Spn88Eb-PA 426 CG6687-PA 57..421 37..376 332 29.1 Plus
Spn88Ea-PB 427 CG18525-PB 43..422 21..376 307 27.4 Plus
Spn88Ea-PA 427 CG18525-PA 43..422 21..376 307 27.4 Plus
Spn31A-PA 382 CG4804-PA 18..381 25..375 292 27.3 Plus
Spn53F-PB 379 CG10956-PB 21..376 20..373 282 24.8 Plus
Spn43Ab-PB 393 CG1865-PB 36..389 25..375 279 23.8 Plus
Spn42Db-PD 286 CG9454-PD 10..282 18..286 260 29.9 Plus
Spn43Ad-PA 407 CG1859-PA 55..406 37..375 215 23.6 Plus
Spn28Dc-PA 536 CG7219-PA 130..532 39..376 196 20.8 Plus
Spn77Bc-PB 416 CG6289-PB 199..396 172..361 183 28.8 Plus
Spn77Bc-PA 416 CG6289-PA 199..396 172..361 183 28.8 Plus
Spn77Bb-PA 362 CG6663-PA 14..342 49..361 179 24.6 Plus
Acp76A-PB 387 CG3801-PB 8..366 10..373 176 23.9 Plus
Acp76A-PA 388 CG3801-PA 8..367 10..373 175 22.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19718-PA 395 GI19718-PA 4..378 14..376 488 33.9 Plus
Dmoj\GI19487-PA 384 GI19487-PA 24..382 21..374 464 31 Plus
Dmoj\GI19810-PA 401 GI19810-PA 16..380 18..374 461 31.8 Plus
Dmoj\GI20049-PA 503 GI20049-PA 136..496 20..376 431 29.9 Plus
Dmoj\GI19420-PA 376 GI19420-PA 15..371 21..374 410 29 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11125-PA 404 GL11125-PA 10..380 20..376 516 33.1 Plus
Dper\GL13961-PA 417 GL13961-PA 53..417 20..376 480 31.1 Plus
Dper\GL11126-PA 421 GL11126-PA 52..421 19..376 471 31.9 Plus
Dper\GL10534-PA 376 GL10534-PA 13..372 19..375 451 29.2 Plus
Dper\GL11156-PA 390 GL11156-PA 30..388 21..374 451 30.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24617-PA 375 GA24617-PA 4..375 7..376 611 37.5 Plus
Dpse\GA21800-PA 404 GA21800-PA 10..380 20..376 492 32.3 Plus
Dpse\GA26905-PA 417 GA26905-PA 53..417 20..376 468 31.1 Plus
Dpse\GA24618-PA 407 GA24618-PA 39..407 19..376 467 32.2 Plus
Dpse\GA10637-PA 376 GA10637-PA 13..372 19..375 449 29.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13262-PA 262 GM13262-PA 1..209 49..252 787 75.6 Plus
Dsec\GM20904-PA 372 GM20904-PA 1..372 5..376 787 43.1 Plus
Dsec\GM13261-PA 309 GM13261-PA 2..300 32..335 652 46.6 Plus
Dsec\GM16481-PA 397 GM16481-PA 16..395 1..376 591 36.3 Plus
Dsec\GM13262-PA 262 GM13262-PA 157..262 283..388 480 86.8 Plus
Dsec\GM20903-PA 403 GM20903-PA 29..386 33..382 470 30.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22458-PA 339 GD22458-PA 1..336 49..384 1643 93.2 Plus
Dsim\GD22457-PA 348 GD22457-PA 4..340 32..374 712 44.8 Plus
Dsim\Spn2-PA 374 GD22426-PA 1..373 5..376 707 43.3 Plus
Dsim\GD23476-PA 397 GD23476-PA 29..395 14..376 593 37 Plus
Dsim\GD10430-PA 403 GD10430-PA 10..386 20..382 462 30.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17545-PA 407 GJ17545-PA 33..382 37..379 495 32.4 Plus
Dvir\GJ15151-PA 387 GJ15151-PA 27..385 21..374 459 30.8 Plus
Dvir\GJ18486-PA 377 GJ18486-PA 16..374 18..372 428 31.7 Plus
Dvir\GJ22484-PA 376 GJ22484-PA 15..372 21..375 419 28.7 Plus
Dvir\GJ14938-PA 519 GJ14938-PA 152..517 20..381 384 29.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20758-PA 404 GK20758-PA 10..400 9..376 497 32.2 Plus
Dwil\GK20885-PA 422 GK20885-PA 35..382 37..376 495 34.1 Plus
Dwil\GK20759-PA 401 GK20759-PA 36..401 18..382 476 32.4 Plus
Dwil\GK20886-PA 391 GK20886-PA 18..387 19..373 468 32.4 Plus
Dwil\GK21791-PA 365 GK21791-PA 5..363 21..374 461 31.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17980-PA 286 GE17980-PA 1..281 10..290 1247 84 Plus
Dyak\GE11098-PA 375 GE11098-PA 1..374 5..376 754 43.9 Plus
Dyak\GE19081-PA 374 GE19081-PA 1..374 5..376 750 42.1 Plus
Dyak\GE18323-PA 400 GE18323-PA 35..392 11..374 732 43.6 Plus
Dyak\Spn2-PA 372 GE11095-PA 1..371 5..376 725 44.3 Plus